AT4G25670

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0005288
Physical Location & Seq
Reverse (-)
13085198 .. 13087090
1893 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G25670.1

Sequence Viewer

Length: 567 bp
ATGGATCACACGGTGTGCAAGCAAGTTCAGCCAGTCGTTAGGAAAGCGAAGAAGAAGCATGGTAAAGATGAATTTGATCGTATCAAACAAGCTGAGAAGAAAAAGAGACGTTTGGAGAAAGCTCTTGCTACTTCTGCAGCCATCCGGGCTGAGCTTGAAAAGAAGAAGCAGAAGAGATTGGAAGAACAACAAAGGTTAGATGAAGAAGGAGCTGCAATTGCAGAAGCTGTTGCTCTGCACGTCCTACTGGGCGAAGATTCTGATGATTCATCTCGAGTCAAGTTTGGTGAAGAAAAGGGTTTCACAATGGATCTGTTTAGAGATGAAAGAACTAACTACGTTCCTCGCCAAAGCTGTGCTAGCTATGCGGTTCAAGGGATTGGGTTTGTGTCAAATGGCTATGGACTAGGAGATAGTAACTGGTCGCCATTCACGAGGAGGGGTGCTTGGGATAACAACATGGGAATATCAGCTGATTTGATTGCTGCTCAGGCTGTCTCGGCGCTACAGATATCTGAAAATGCTGATGGGAACGCCTTTGTGTTCAATGGGATGTTCCGGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

20.94

Weight (kDa)

8.81

Isoelectric Point (pI)

40.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 368
AclWI GGATC 2 cut(s) 12, 318
AcsI RAATTY 1 cut(s) 71
AdeI CACNNNGTG 2 cut(s) 13, 15
AgsI TTSAA 3 cut(s) 158, 374, 547
AjiI CACGTC 1 cut(s) 241
AluBI AGCT 8 cut(s) 92, 122, 154, 212, 227, 354, 363, 473
AluI AGCT 8 cut(s) 92, 122, 154, 212, 227, 354, 363, 473
Alw26I GTCTC 2 cut(s) 100, 502
AlwI GGATC 2 cut(s) 12, 318
AlwNI CAGNNNCTG 1 cut(s) 227
Ama87I CYCGRG 1 cut(s) 273
ApeKI GCWGC 3 cut(s) 137, 212, 485
ApoI RAATTY 1 cut(s) 71
AspLEI GCGC 1 cut(s) 505
AsuC2I CCSGG 2 cut(s) 146, 560
AsuHPI GGTGA 1 cut(s) 299
AsuNHI GCTAGC 1 cut(s) 359
AvaI CYCGRG 1 cut(s) 273
BauI CACGAG 1 cut(s) 433
BbvI GCAGC 3 cut(s) 149, 199, 472
BccI CCATC 2 cut(s) 149, 521
BcnI CCSGG 2 cut(s) 146, 560
BcoDI GTCTC 2 cut(s) 100, 502
BfaI CTAG 2 cut(s) 360, 407
BfmI CTRYAG 2 cut(s) 135, 506
BfoI RGCGCY 1 cut(s) 506
BglI GCCNNNNNGGC 1 cut(s) 146
BisI GCNGC 3 cut(s) 138, 213, 486
BlpI GCTNAGC 1 cut(s) 150
BlsI GCNGC 3 cut(s) 139, 214, 487
Bme1390I CCNGG 2 cut(s) 146, 560
BmeT110I CYCGRG 1 cut(s) 273
BmgBI CACGTC 1 cut(s) 241
BmrFI CCNGG 2 cut(s) 146, 560
BmrI ACTGGG 1 cut(s) 257
BmtI GCTAGC 1 cut(s) 363
BmuI ACTGGG 1 cut(s) 257
Bpu10I CCTNAGC 1 cut(s) 489
Bpu1102I GCTNAGC 1 cut(s) 150
BpuMI CCSGG 2 cut(s) 146, 560
BsaJI CCNNGG 1 cut(s) 559
Bse1I ACTGG 3 cut(s) 32, 252, 425
BseDI CCNNGG 1 cut(s) 559
BseGI GGATG 2 cut(s) 141, 558
BseMII CTCAG 3 cut(s) 84, 141, 503
BseNI ACTGG 3 cut(s) 32, 252, 425
BseRI GAGGAG 1 cut(s) 451
BseXI GCAGC 3 cut(s) 149, 199, 472
BsgI GTGCAG 1 cut(s) 221
BsiHKCI CYCGRG 1 cut(s) 273
BsiSI CCGG 2 cut(s) 145, 559
BsmAI GTCTC 2 cut(s) 100, 502
BsmBI CGTCTC 1 cut(s) 100
BsoBI CYCGRG 1 cut(s) 273
Bsp143I GATC 3 cut(s) 4, 76, 310
Bsp1720I GCTNAGC 1 cut(s) 150
BspACI CCGC 1 cut(s) 368
BspCNI CTCAG 3 cut(s) 85, 142, 502
BspMAI CTGCAG 1 cut(s) 139
BspOI GCTAGC 1 cut(s) 363
BspPI GGATC 2 cut(s) 12, 318
BsrI ACTGG 3 cut(s) 32, 252, 425
BssECI CCNNGG 1 cut(s) 559
BssMI GATC 3 cut(s) 4, 76, 310
BssSI CACGAG 1 cut(s) 433
Bst2BI CACGAG 1 cut(s) 433
Bst4CI ACNGT 1 cut(s) 13
Bst6I CTCTTC 1 cut(s) 167
BstC8I GCNNGC 2 cut(s) 20, 361
BstDEI CTNAG 3 cut(s) 93, 150, 489
BstF5I GGATG 2 cut(s) 141, 558
BstH2I RGCGCY 1 cut(s) 506
BstHHI GCGC 1 cut(s) 505
BstKTI GATC 3 cut(s) 7, 79, 313
BstMAI GTCTC 2 cut(s) 100, 502
BstMBI GATC 3 cut(s) 4, 76, 310
BstMWI GCNNNNNNNGC 8 cut(s) 28, 134, 146, 218, 360, 365, 491, 500
BstSCI CCNGG 2 cut(s) 144, 558
BstSFI CTRYAG 2 cut(s) 135, 506
BstV1I GCAGC 3 cut(s) 149, 199, 472
BstX2I RGATCY 1 cut(s) 310
BstYI RGATCY 1 cut(s) 310
BtrI CACGTC 1 cut(s) 241
BtsCI GGATG 2 cut(s) 141, 558
Cac8I GCNNGC 2 cut(s) 20, 361
CaiI CAGNNNCTG 1 cut(s) 227
CfoI GCGC 1 cut(s) 505
CviAII CATG 2 cut(s) 59, 460
DdeI CTNAG 3 cut(s) 93, 150, 489
DpnI GATC 3 cut(s) 6, 78, 312
DpnII GATC 3 cut(s) 4, 76, 310
DraIII CACNNNGTG 2 cut(s) 13, 15
Eam1104I CTCTTC 1 cut(s) 167
EarI CTCTTC 1 cut(s) 167
Eco32I GATATC 1 cut(s) 513
Eco88I CYCGRG 1 cut(s) 273
EcoRV GATATC 1 cut(s) 513
Esp3I CGTCTC 1 cut(s) 100
FaeI CATG 2 cut(s) 62, 463
FaiI YATR 4 cut(s) 60, 366, 402, 461
FatI CATG 2 cut(s) 58, 459
Fnu4HI GCNGC 3 cut(s) 138, 213, 486
FokI GGATG 1 cut(s) 128
Fsp4HI GCNGC 3 cut(s) 138, 213, 486
FspBI CTAG 2 cut(s) 360, 407
GlaI GCGC 1 cut(s) 504
GluI GCNGC 3 cut(s) 138, 213, 486
HaeII RGCGCY 1 cut(s) 506
HapII CCGG 2 cut(s) 145, 559
HhaI GCGC 1 cut(s) 505
Hin1II CATG 2 cut(s) 62, 463
Hin6I GCGC 1 cut(s) 503
HinP1I GCGC 1 cut(s) 503
HinfI GANTC 3 cut(s) 257, 266, 276
HpaII CCGG 2 cut(s) 145, 559
HphI GGTGA 1 cut(s) 299
Hpy188I TCNGA 2 cut(s) 262, 517
Hpy188III TCNNGA 2 cut(s) 273, 433
HpyAV CCTTC 1 cut(s) 200
HpyCH4III ACNGT 1 cut(s) 13
HpyCH4IV ACGT 3 cut(s) 109, 240, 339
HpyCH4V TGCA 5 cut(s) 18, 137, 215, 221, 238
HpyF10VI GCNNNNNNNGC 8 cut(s) 28, 134, 146, 218, 360, 365, 491, 500
HpyF3I CTNAG 3 cut(s) 93, 150, 489
HpySE526I ACGT 3 cut(s) 109, 240, 339
Hsp92II CATG 2 cut(s) 62, 463
HspAI GCGC 1 cut(s) 503
Kzo9I GATC 3 cut(s) 4, 76, 310
LmnI GCTCC 1 cut(s) 209
LpnPI CCDG 5 cut(s) 45, 158, 233, 406, 476
Lsp1109I GCAGC 3 cut(s) 149, 199, 472
MaeI CTAG 2 cut(s) 360, 407
MaeII ACGT 3 cut(s) 109, 240, 339
MaeIII GTNAC 1 cut(s) 416
MalI GATC 3 cut(s) 6, 78, 312
MboI GATC 3 cut(s) 4, 76, 310
MboII GAAGA 9 cut(s) 61, 64, 109, 175, 184, 194, 215, 266, 302
MfeI CAATTG 1 cut(s) 216
MflI RGATCY 1 cut(s) 310
MluCI AATT 2 cut(s) 71, 216
MlyI GAGTC 1 cut(s) 285
MnlI CCTC 3 cut(s) 354, 429, 432
MspA1I CMGCKG 1 cut(s) 473
MspI CCGG 2 cut(s) 145, 559
MspR9I CCNGG 2 cut(s) 146, 560
MunI CAATTG 1 cut(s) 216
MwoI GCNNNNNNNGC 8 cut(s) 28, 134, 146, 218, 360, 365, 491, 500
NciI CCSGG 2 cut(s) 146, 560
NdeII GATC 3 cut(s) 4, 76, 310
NheI GCTAGC 1 cut(s) 359
NlaIII CATG 2 cut(s) 62, 463
NmeAIII GCCGAG 1 cut(s) 479
PaeR7I CTCGAG 1 cut(s) 273
PcsI WCGNNNNNNNCGW 1 cut(s) 431
PfeI GAWTC 2 cut(s) 257, 266
PkrI GCNGC 3 cut(s) 139, 214, 487
PleI GAGTC 1 cut(s) 284
PpsI GAGTC 1 cut(s) 284
PstI CTGCAG 1 cut(s) 139
PstNI CAGNNNCTG 1 cut(s) 227
PsuI RGATCY 1 cut(s) 310
PvuII CAGCTG 1 cut(s) 473
SatI GCNGC 3 cut(s) 138, 213, 486
Sau3AI GATC 3 cut(s) 4, 76, 310
SchI GAGTC 1 cut(s) 285
ScrFI CCNGG 2 cut(s) 146, 560
SfcI CTRYAG 2 cut(s) 135, 506
Sfr274I CTCGAG 1 cut(s) 273
SlaI CTCGAG 1 cut(s) 273
SmlI CTYRAG 1 cut(s) 273
SmoI CTYRAG 1 cut(s) 273
Sse9I AATT 2 cut(s) 71, 216
SsiI CCGC 1 cut(s) 368
SspMI CTAG 2 cut(s) 360, 407
StyD4I CCNGG 2 cut(s) 144, 558
TaaI ACNGT 1 cut(s) 13
TaiI ACGT 3 cut(s) 112, 243, 342
TaqI TCGA 1 cut(s) 274
TasI AATT 2 cut(s) 71, 216
TfiI GAWTC 2 cut(s) 257, 266
TseI GCWGC 3 cut(s) 137, 212, 485
TspDTI ATGAA 4 cut(s) 84, 216, 258, 339
XapI RAATTY 1 cut(s) 71
XhoI CTCGAG 1 cut(s) 273
XspI CTAG 2 cut(s) 360, 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.