Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0005288

Physical Location & Seq

Genomic Coordinates Reverse (-)

19694843 .. 19695502

Gene Structure 660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g21870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGATAGCATGGAGTGTAATAAATTGCAACCGGTTGTGAGAAAAGTTAAGAAAAAGCAGGTGAAGGACGAGTTGGATCGATCATCTTTAATCCTTTCAAAACAGGCTGAGAAAAAGAAGAGGCGTTTGGAGAAAGCCCTTGCTACTTCGGCAGCCATCATTTCTGAACTAGAAAAGAAAAAACAGAAGAAGAAAGAAGAGCAACAGAGGCTTGATGAAGAAGGTGCTGCAATTGCGGAGGCTGTTGCGTTGCGTGTCCTTCTTGGTGAAGAAGACTCAGATGAAACATGTGAGATTGTTCTGAACAAAGATCAAGTGTTCAATCATTGGGATTGTCCTGGCGACATCAACGTATTTGTGGGTGGAAGGAGGACATGCTTTCCTTATCAAGACTCTGCAAAGTGTTCACTCGAAAGGATTGGGTGGGTGTCTGGTGCTTACAGATCGGGATACAACTTGGGTGGCTTAGGGAACAGTGAATGGTCGCTCTCATCTGGACCTTATGAAAGAGATTACGCAAAATTATTTTCTGACGATGGACGTTGGGGTACCAGCGGATTTGCTGCTGGGCTCATTGCGGCGCAGGCTGTTTCATCTCTACGGATTGCAGAGGATGCACATGAAGGCACAATAGTGCTCGACGGAATGCTAAGACGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

220

Amino Acids

24.34

Weight (kDa)

6.76

Isoelectric Point (pI)

51.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25670 AT4G25670 AT4G25690 AT4G25690 AT5G52550
fragaria_vesca	FvH4_7g30190 FvH4_7g30190
malus_domestica	MD01G1207900.v1.1 MD01G1208000.v1.1 MD07G1278500.v1.1 MD07G1278600.v1.1
prunus_persica	Prupe.2G300400_v2.0.a1 Prupe.2G300500_v2.0.a1 Prupe.7G027400_v2.0.a1
pyrus_communis	pycom01g21870 pycom07g25350
rosa_chinensis	RchiOBHm_Chr1g0378241
rosa_laevigata	RLG00000026457
rosa_multiflora	Rmu_sc0006315.1_g000002 Rmu_sc0038642.1_g000002
rosa_roxburghii	Rroxscaffold_4G00280620
rosa_rugosa	Rorug01G0407300 Rorug01G0407400
rosa_samantha	Rh1AG422400 Rh1BG386700 Rh1CG400300 Rh1DG417900
rosa_wichuraiana	Rw1G037500 Rw1G037510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	49
Acc36I	ACCTGC	1 cut(s)	49
Acc65I	GGTACC	1 cut(s)	548
AccB1I	GGYRCC	1 cut(s)	548
AciI	CCGC	3 cut(s)	236, 555, 578
AclWI	GGATC	1 cut(s)	84
AfaI	GTAC	1 cut(s)	550
AflIII	ACRYGT	1 cut(s)	287
AgeI	ACCGGT	1 cut(s)	31
AgsI	TTSAA	2 cut(s)	99, 322
AjnI	CCWGG	1 cut(s)	337
AjuI	GAANNNNNNNTTGG	4 cut(s)	56, 88, 110, 142
AleI	CACNNNNGTG	1 cut(s)	632
Alw21I	GWGCWC	1 cut(s)	639
AlwI	GGATC	1 cut(s)	84
ApeKI	GCWGC	3 cut(s)	152, 227, 563
AsiGI	ACCGGT	1 cut(s)	31
Asp718I	GGTACC	1 cut(s)	548
AspLEI	GCGC	1 cut(s)	583
AspS9I	GGNCC	1 cut(s)	497
AsuHPI	GGTGA	2 cut(s)	73, 278
AvaII	GGWCC	1 cut(s)	497
BanI	GGYRCC	1 cut(s)	548
BanII	GRGCYC	1 cut(s)	573
BbsI	GAAGAC	1 cut(s)	279
Bbv12I	GWGCWC	1 cut(s)	639
BbvI	GCAGC	3 cut(s)	164, 214, 550
BccI	CCATC	2 cut(s)	164, 530
BciT130I	CCWGG	1 cut(s)	339
BciVI	GTATCC	1 cut(s)	443
BfaI	CTAG	1 cut(s)	170
BfuAI	ACCTGC	1 cut(s)	49
BfuI	GTATCC	1 cut(s)	443
BisI	GCNGC	4 cut(s)	153, 228, 564, 579
BlsI	GCNGC	4 cut(s)	154, 229, 565, 580
Bme1390I	CCNGG	1 cut(s)	339
Bme18I	GGWCC	1 cut(s)	497
BmgT120I	GGNCC	1 cut(s)	497
BmiI	GGNNCC	1 cut(s)	550
BmrFI	CCNGG	1 cut(s)	339
BmsI	GCATC	1 cut(s)	604
BpiI	GAAGAC	1 cut(s)	279
Bpu10I	CCTNAGC	1 cut(s)	466
Bsa29I	ATCGAT	1 cut(s)	79
BsaWI	WCCGGW	1 cut(s)	31
Bse118I	RCCGGY	1 cut(s)	31
Bse3DI	GCAATG	1 cut(s)	573
BseBI	CCWGG	1 cut(s)	339
BseCI	ATCGAT	1 cut(s)	79
BseGI	GGATG	1 cut(s)	619
BseMI	GCAATG	1 cut(s)	573
BseMII	CTCAG	2 cut(s)	99, 291
BseXI	GCAGC	3 cut(s)	164, 214, 550
BseYI	CCCAGC	1 cut(s)	566
BshNI	GGYRCC	1 cut(s)	548
BshTI	ACCGGT	1 cut(s)	31
BshVI	ATCGAT	1 cut(s)	79
BsiHKAI	GWGCWC	1 cut(s)	639
BsiSI	CCGG	1 cut(s)	32
BsmI	GAATGC	1 cut(s)	651
Bsp1286I	GDGCHC	2 cut(s)	573, 639
Bsp143I	GATC	4 cut(s)	76, 80, 310, 443
BspACI	CCGC	3 cut(s)	236, 555, 578
BspCNI	CTCAG	2 cut(s)	100, 290
BspDI	ATCGAT	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	550
BspMI	ACCTGC	1 cut(s)	49
BspPI	GGATC	1 cut(s)	84
BspQI	GCTCTTC	1 cut(s)	192
BspT107I	GGYRCC	1 cut(s)	548
BsrDI	GCAATG	1 cut(s)	573
BsrFI	RCCGGY	1 cut(s)	31
BssAI	RCCGGY	1 cut(s)	31
BssMI	GATC	4 cut(s)	76, 80, 310, 443
Bst2UI	CCWGG	1 cut(s)	339
Bst4CI	ACNGT	1 cut(s)	476
Bst6I	CTCTTC	2 cut(s)	113, 192
BstAPI	GCANNNNNTGC	1 cut(s)	614
BstC8I	GCNNGC	1 cut(s)	585
BstDEI	CTNAG	4 cut(s)	108, 277, 466, 650
BstF5I	GGATG	1 cut(s)	619
BstHHI	GCGC	1 cut(s)	583
BstKTI	GATC	4 cut(s)	79, 83, 313, 446
BstMBI	GATC	4 cut(s)	76, 80, 310, 443
BstMWI	GCNNNNNNNGC	5 cut(s)	149, 208, 233, 584, 614
BstNI	CCWGG	1 cut(s)	339
BstNSI	RCATGY	2 cut(s)	291, 378
BstSCI	CCNGG	1 cut(s)	337
BstV1I	GCAGC	3 cut(s)	164, 214, 550
BstV2I	GAAGAC	1 cut(s)	279
Bsu15I	ATCGAT	1 cut(s)	79
BsuI	GTATCC	1 cut(s)	443
BsuTUI	ATCGAT	1 cut(s)	79
BtsCI	GGATG	1 cut(s)	619
BtsIMutI	CAGTG	1 cut(s)	481
BveI	ACCTGC	1 cut(s)	49
Cac8I	GCNNGC	1 cut(s)	585
CfoI	GCGC	1 cut(s)	583
Cfr10I	RCCGGY	1 cut(s)	31
Cfr13I	GGNCC	1 cut(s)	497
ClaI	ATCGAT	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	549
CspAI	ACCGGT	1 cut(s)	31
CspCI	CAANNNNNGTGG	2 cut(s)	442, 477
CviAII	CATG	4 cut(s)	10, 288, 375, 620
CviJI	RGCY	8 cut(s)	107, 137, 155, 211, 242, 465, 571, 587
CviKI_1	RGCY	8 cut(s)	107, 137, 155, 211, 242, 465, 571, 587
CviQI	GTAC	1 cut(s)	549
DdeI	CTNAG	4 cut(s)	108, 277, 466, 650
DpnI	GATC	4 cut(s)	78, 82, 312, 445
DpnII	GATC	4 cut(s)	76, 80, 310, 443
Eam1104I	CTCTTC	2 cut(s)	113, 192
EarI	CTCTTC	2 cut(s)	113, 192
Eco24I	GRGCYC	1 cut(s)	573
Eco47I	GGWCC	1 cut(s)	497
EcoRII	CCWGG	1 cut(s)	337
EcoT38I	GRGCYC	1 cut(s)	573
FaeI	CATG	4 cut(s)	13, 291, 378, 623
FaiI	YATR	5 cut(s)	11, 289, 376, 504, 621
FatI	CATG	4 cut(s)	9, 287, 374, 619
Fnu4HI	GCNGC	4 cut(s)	153, 228, 564, 579
FokI	GGATG	1 cut(s)	626
FriOI	GRGCYC	1 cut(s)	573
Fsp4HI	GCNGC	4 cut(s)	153, 228, 564, 579
FspBI	CTAG	1 cut(s)	170
GlaI	GCGC	1 cut(s)	582
GluI	GCNGC	4 cut(s)	153, 228, 564, 579
GsaI	CCCAGC	1 cut(s)	570
HapII	CCGG	1 cut(s)	32
HhaI	GCGC	1 cut(s)	583
Hin1II	CATG	4 cut(s)	13, 291, 378, 623
Hin6I	GCGC	1 cut(s)	581
HinP1I	GCGC	1 cut(s)	581
HinfI	GANTC	2 cut(s)	275, 392
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	2 cut(s)	73, 278
Hpy166II	GTNNAC	1 cut(s)	407
Hpy188I	TCNGA	4 cut(s)	166, 280, 303, 532
Hpy188III	TCNNGA	3 cut(s)	389, 447, 495
Hpy8I	GTNNAC	1 cut(s)	407
Hpy99I	CGWCG	1 cut(s)	644
HpyAV	CCTTC	5 cut(s)	58, 215, 269, 360, 617
HpyCH4III	ACNGT	1 cut(s)	476
HpyCH4IV	ACGT	3 cut(s)	351, 541, 655
HpyCH4V	TGCA	5 cut(s)	28, 230, 398, 608, 617
HpyF10VI	GCNNNNNNNGC	5 cut(s)	149, 208, 233, 584, 614
HpyF3I	CTNAG	4 cut(s)	108, 277, 466, 650
HpySE526I	ACGT	3 cut(s)	351, 541, 655
Hsp92II	CATG	4 cut(s)	13, 291, 378, 623
HspAI	GCGC	1 cut(s)	581
KpnI	GGTACC	1 cut(s)	552
Kzo9I	GATC	4 cut(s)	76, 80, 310, 443
LguI	GCTCTTC	1 cut(s)	192
Lsp1109I	GCAGC	3 cut(s)	164, 214, 550
LweI	GCATC	1 cut(s)	604
MaeI	CTAG	1 cut(s)	170
MaeII	ACGT	3 cut(s)	351, 541, 655
MalI	GATC	4 cut(s)	78, 82, 312, 445
MboI	GATC	4 cut(s)	76, 80, 310, 443
MboII	GAAGA	7 cut(s)	130, 199, 202, 209, 230, 281, 284
MfeI	CAATTG	1 cut(s)	231
MhlI	GDGCHC	2 cut(s)	573, 639
MluCI	AATT	3 cut(s)	23, 231, 521
MlyI	GAGTC	2 cut(s)	269, 386
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	5 cut(s)	114, 201, 232, 363, 604
MseI	TTAA	2 cut(s)	48, 89
MslI	CAYNNNNRTG	1 cut(s)	632
MspA1I	CMGCKG	1 cut(s)	555
MspI	CCGG	1 cut(s)	32
MspR9I	CCNGG	1 cut(s)	339
MunI	CAATTG	1 cut(s)	231
Mva1269I	GAATGC	1 cut(s)	651
MvaI	CCWGG	1 cut(s)	339
MwoI	GCNNNNNNNGC	5 cut(s)	149, 208, 233, 584, 614
NdeII	GATC	4 cut(s)	76, 80, 310, 443
NlaIII	CATG	4 cut(s)	13, 291, 378, 623
NlaIV	GGNNCC	1 cut(s)	550
NspI	RCATGY	2 cut(s)	291, 378
OliI	CACNNNNGTG	1 cut(s)	632
PaqCI	CACCTGC	1 cut(s)	49
PciI	ACATGT	1 cut(s)	287
PciSI	GCTCTTC	1 cut(s)	192
PctI	GAATGC	1 cut(s)	651
PinAI	ACCGGT	1 cut(s)	31
PkrI	GCNGC	4 cut(s)	154, 229, 565, 580
PleI	GAGTC	2 cut(s)	269, 386
PpsI	GAGTC	2 cut(s)	269, 386
PscI	ACATGT	1 cut(s)	287
Psp6I	CCWGG	1 cut(s)	337
PspFI	CCCAGC	1 cut(s)	566
PspGI	CCWGG	1 cut(s)	337
PspN4I	GGNNCC	1 cut(s)	550
PspPI	GGNCC	1 cut(s)	497
RsaI	GTAC	1 cut(s)	550
RsaNI	GTAC	1 cut(s)	549
RseI	CAYNNNNRTG	1 cut(s)	632
SapI	GCTCTTC	1 cut(s)	192
SaqAI	TTAA	2 cut(s)	48, 89
SatI	GCNGC	4 cut(s)	153, 228, 564, 579
Sau3AI	GATC	4 cut(s)	76, 80, 310, 443
Sau96I	GGNCC	1 cut(s)	497
SchI	GAGTC	2 cut(s)	269, 386
ScrFI	CCNGG	1 cut(s)	339
SduI	GDGCHC	2 cut(s)	573, 639
SetI	ASST	6 cut(s)	63, 226, 354, 502, 544, 658
SfaNI	GCATC	1 cut(s)	604
SinI	GGWCC	1 cut(s)	497
SmiMI	CAYNNNNRTG	1 cut(s)	632
Sse9I	AATT	3 cut(s)	23, 231, 521
SsiI	CCGC	3 cut(s)	236, 555, 578
SspMI	CTAG	1 cut(s)	170
StyD4I	CCNGG	1 cut(s)	337
TaaI	ACNGT	1 cut(s)	476
TaiI	ACGT	3 cut(s)	354, 544, 658
TaqI	TCGA	3 cut(s)	79, 411, 639
TasI	AATT	3 cut(s)	23, 231, 521
TauI	GCSGC	1 cut(s)	581
Tru1I	TTAA	2 cut(s)	48, 89
Tru9I	TTAA	2 cut(s)	48, 89
TscAI	CASTG	1 cut(s)	481
TseI	GCWGC	3 cut(s)	152, 227, 563
TspDTI	ATGAA	5 cut(s)	231, 297, 519, 582, 636
TspGWI	ACGGA	2 cut(s)	616, 657
TspRI	CASTG	1 cut(s)	481
VpaK11BI	GGWCC	1 cut(s)	497
XceI	RCATGY	2 cut(s)	291, 378
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.