Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0005288

Physical Location & Seq

Genomic Coordinates Reverse (-)

28892774 .. 28894091

Gene Structure 1318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G300400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGATAACATGGAGTGTAATAAACTGCAACCTGTTGTGAGAAAAGTTAAGAAGAAGCAGGTGAAGGACGAGTTGGATCGTCAAAAACAGGCTGAGAAAAAGAAGAGGCGCTTGGAGAAAGCCCTTGCTACTTCGGCTGCCATCATTTCTGAACTAGAAAAGAAAAAACAAAAGCAGAAAGAAGAGCAACAGAGGCTTGATGAAGAAGGTGCTGCAATTGCCGAGGCTGTTGCGCTGCATGTTCTACTTGGTGAAGACTCAGATGAGACATGTGAAATTGTTCTGAACAAAGACGAAGTGCTTAATCCTTGGGATTGTCCTGGCGATATTGACATCTTTATGGCTGGACGGAGGGCATGCTTTCCTTATCAGGACTCTGCAAAGTGTTCACTTGAAAGGATTGGGTGGGTCTCTAATGCTTACAGATCGGGATGCAAGTGGGGTGGTTTGGGGAACAGTCAATTGTCGTTCTCATCTGGGCCTTATGGAAGAGATTACCATGAACAATTTTGTGAGGAAGCAGGTTGGGGGACTACGGGATTCGCTGCTGGTCTCATTGCAGCACAAGCTGTTTCATCTCTTCAGATTGCAGAGGAAGCACATGAAGGCACAATGGTGCTTGATGGAATGCTAAGACGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

214

Amino Acids

23.74

Weight (kDa)

5.58

Isoelectric Point (pI)

52.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25670 AT4G25670 AT4G25690 AT4G25690 AT5G52550
fragaria_vesca	FvH4_7g30190 FvH4_7g30190
malus_domestica	MD01G1207900.v1.1 MD01G1208000.v1.1 MD07G1278500.v1.1 MD07G1278600.v1.1
prunus_persica	Prupe.2G300400_v2.0.a1 Prupe.2G300500_v2.0.a1 Prupe.7G027400_v2.0.a1
pyrus_communis	pycom01g21870 pycom07g25350
rosa_chinensis	RchiOBHm_Chr1g0378241
rosa_laevigata	RLG00000026457
rosa_multiflora	Rmu_sc0006315.1_g000002 Rmu_sc0038642.1_g000002
rosa_roxburghii	Rroxscaffold_4G00280620
rosa_rugosa	Rorug01G0407300 Rorug01G0407400
rosa_samantha	Rh1AG422400 Rh1BG386700 Rh1CG400300 Rh1DG417900
rosa_wichuraiana	Rw1G037500 Rw1G037510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	49
Acc36I	ACCTGC	2 cut(s)	49, 512
AclWI	GGATC	1 cut(s)	84
AcuI	CTGAAG	1 cut(s)	566
AflIII	ACRYGT	1 cut(s)	269
AgsI	TTSAA	1 cut(s)	395
AjnI	CCWGG	1 cut(s)	319
AjuI	GAANNNNNNNTTGG	4 cut(s)	56, 88, 95, 127
AleI	CACNNNNGTG	1 cut(s)	614
AluBI	AGCT	1 cut(s)	569
AluI	AGCT	1 cut(s)	569
Alw26I	GTCTC	3 cut(s)	260, 415, 557
AlwI	GGATC	1 cut(s)	84
AoxI	GGCC	1 cut(s)	479
ApeKI	GCWGC	5 cut(s)	137, 212, 235, 545, 560
Asp700I	GAANNNNTTC	1 cut(s)	279
AspLEI	GCGC	2 cut(s)	111, 235
AspS9I	GGNCC	1 cut(s)	479
AsuHPI	GGTGA	2 cut(s)	73, 263
BbsI	GAAGAC	1 cut(s)	261
BbvI	GCAGC	5 cut(s)	124, 199, 222, 532, 572
BccI	CCATC	2 cut(s)	149, 617
BcgI	CGANNNNNNTGC	2 cut(s)	212, 246
BciT130I	CCWGG	1 cut(s)	321
BcoDI	GTCTC	3 cut(s)	260, 415, 557
BfaI	CTAG	1 cut(s)	155
BfoI	RGCGCY	1 cut(s)	112
BfuAI	ACCTGC	2 cut(s)	49, 512
BisI	GCNGC	5 cut(s)	138, 213, 236, 546, 561
BlsI	GCNGC	5 cut(s)	139, 214, 237, 547, 562
Bme1390I	CCNGG	1 cut(s)	321
BmgT120I	GGNCC	1 cut(s)	479
BmrFI	CCNGG	1 cut(s)	321
BmsI	GCATC	1 cut(s)	422
BpiI	GAAGAC	1 cut(s)	261
BsaI	GGTCTC	2 cut(s)	415, 557
BsaJI	CCNNGG	2 cut(s)	222, 308
Bse3DI	GCAATG	1 cut(s)	555
BseBI	CCWGG	1 cut(s)	321
BseDI	CCNNGG	2 cut(s)	222, 308
BseGI	GGATG	1 cut(s)	437
BseMI	GCAATG	1 cut(s)	555
BseMII	CTCAG	2 cut(s)	84, 273
BseXI	GCAGC	5 cut(s)	124, 199, 222, 532, 572
BshFI	GGCC	1 cut(s)	481
BslFI	GGGAC	1 cut(s)	544
BsmAI	GTCTC	3 cut(s)	260, 415, 557
BsmFI	GGGAC	1 cut(s)	544
BsmI	GAATGC	1 cut(s)	633
BsnI	GGCC	1 cut(s)	481
Bso31I	GGTCTC	2 cut(s)	415, 557
Bsp143I	GATC	2 cut(s)	76, 425
BspANI	GGCC	1 cut(s)	481
BspCNI	CTCAG	2 cut(s)	85, 272
BspMI	ACCTGC	2 cut(s)	49, 512
BspPI	GGATC	1 cut(s)	84
BspQI	GCTCTTC	1 cut(s)	177
BspTNI	GGTCTC	2 cut(s)	415, 557
BsrDI	GCAATG	1 cut(s)	555
BssECI	CCNNGG	2 cut(s)	222, 308
BssMI	GATC	2 cut(s)	76, 425
BssT1I	CCWWGG	1 cut(s)	308
Bst2UI	CCWGG	1 cut(s)	321
Bst4CI	ACNGT	2 cut(s)	458, 639
Bst6I	CTCTTC	4 cut(s)	98, 177, 484, 585
BstC8I	GCNNGC	1 cut(s)	358
BstDEI	CTNAG	3 cut(s)	93, 259, 632
BstF5I	GGATG	1 cut(s)	437
BstH2I	RGCGCY	1 cut(s)	112
BstHHI	GCGC	2 cut(s)	111, 235
BstKTI	GATC	2 cut(s)	79, 428
BstMAI	GTCTC	3 cut(s)	260, 415, 557
BstMBI	GATC	2 cut(s)	76, 425
BstMWI	GCNNNNNNNGC	5 cut(s)	134, 193, 218, 566, 596
BstNI	CCWGG	1 cut(s)	321
BstNSI	RCATGY	3 cut(s)	242, 273, 360
BstSCI	CCNGG	1 cut(s)	319
BstV1I	GCAGC	5 cut(s)	124, 199, 222, 532, 572
BstV2I	GAAGAC	1 cut(s)	261
BsuRI	GGCC	1 cut(s)	481
BtsCI	GGATG	1 cut(s)	437
BveI	ACCTGC	2 cut(s)	49, 512
Cac8I	GCNNGC	1 cut(s)	358
CfoI	GCGC	2 cut(s)	111, 235
Cfr13I	GGNCC	1 cut(s)	479
CspCI	CAANNNNNGTGG	2 cut(s)	424, 459
CviAII	CATG	6 cut(s)	10, 239, 270, 357, 500, 602
CviJI	RGCY	8 cut(s)	92, 122, 137, 196, 227, 344, 481, 569
CviKI_1	RGCY	8 cut(s)	92, 122, 137, 196, 227, 344, 481, 569
DdeI	CTNAG	3 cut(s)	93, 259, 632
DpnI	GATC	2 cut(s)	78, 427
DpnII	GATC	2 cut(s)	76, 425
Eam1104I	CTCTTC	4 cut(s)	98, 177, 484, 585
EarI	CTCTTC	4 cut(s)	98, 177, 484, 585
Eco130I	CCWWGG	1 cut(s)	308
Eco31I	GGTCTC	2 cut(s)	415, 557
Eco57I	CTGAAG	1 cut(s)	566
EcoRII	CCWGG	1 cut(s)	319
EcoT14I	CCWWGG	1 cut(s)	308
ErhI	CCWWGG	1 cut(s)	308
FaeI	CATG	6 cut(s)	13, 242, 273, 360, 503, 605
FaiI	YATR	8 cut(s)	11, 240, 271, 341, 358, 486, 501, 603
FalI	AAGNNNNNCTT	2 cut(s)	95, 127
FaqI	GGGAC	1 cut(s)	544
FatI	CATG	6 cut(s)	9, 238, 269, 356, 499, 601
Fnu4HI	GCNGC	5 cut(s)	138, 213, 236, 546, 561
FokI	GGATG	1 cut(s)	444
Fsp4HI	GCNGC	5 cut(s)	138, 213, 236, 546, 561
FspBI	CTAG	1 cut(s)	155
GlaI	GCGC	2 cut(s)	110, 234
GluI	GCNGC	5 cut(s)	138, 213, 236, 546, 561
HaeII	RGCGCY	1 cut(s)	112
HaeIII	GGCC	1 cut(s)	481
HhaI	GCGC	2 cut(s)	111, 235
Hin1II	CATG	6 cut(s)	13, 242, 273, 360, 503, 605
Hin6I	GCGC	2 cut(s)	109, 233
HinP1I	GCGC	2 cut(s)	109, 233
HinfI	GANTC	3 cut(s)	257, 374, 540
HphI	GGTGA	2 cut(s)	73, 263
Hpy166II	GTNNAC	1 cut(s)	389
Hpy188I	TCNGA	4 cut(s)	151, 262, 285, 585
Hpy188III	TCNNGA	2 cut(s)	371, 429
Hpy8I	GTNNAC	1 cut(s)	389
HpyAV	CCTTC	3 cut(s)	58, 200, 599
HpyCH4III	ACNGT	2 cut(s)	458, 639
HpyCH4V	TGCA	7 cut(s)	28, 215, 238, 380, 435, 560, 590
HpyF10VI	GCNNNNNNNGC	5 cut(s)	134, 193, 218, 566, 596
HpyF3I	CTNAG	3 cut(s)	93, 259, 632
Hsp92II	CATG	6 cut(s)	13, 242, 273, 360, 503, 605
HspAI	GCGC	2 cut(s)	109, 233
Kzo9I	GATC	2 cut(s)	76, 425
LguI	GCTCTTC	1 cut(s)	177
Lsp1109I	GCAGC	5 cut(s)	124, 199, 222, 532, 572
LweI	GCATC	1 cut(s)	422
MaeI	CTAG	1 cut(s)	155
MalI	GATC	2 cut(s)	78, 427
MboI	GATC	2 cut(s)	76, 425
MboII	GAAGA	7 cut(s)	64, 115, 194, 215, 266, 501, 572
MfeI	CAATTG	2 cut(s)	216, 461
MluCI	AATT	4 cut(s)	216, 276, 461, 506
MlyI	GAGTC	2 cut(s)	251, 368
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	6 cut(s)	99, 186, 217, 345, 508, 586
MroXI	GAANNNNTTC	1 cut(s)	279
MseI	TTAA	2 cut(s)	48, 303
MslI	CAYNNNNRTG	2 cut(s)	338, 614
MspR9I	CCNGG	1 cut(s)	321
MunI	CAATTG	2 cut(s)	216, 461
Mva1269I	GAATGC	1 cut(s)	633
MvaI	CCWGG	1 cut(s)	321
MwoI	GCNNNNNNNGC	5 cut(s)	134, 193, 218, 566, 596
NdeII	GATC	2 cut(s)	76, 425
NlaIII	CATG	6 cut(s)	13, 242, 273, 360, 503, 605
NmeAIII	GCCGAG	1 cut(s)	247
NspI	RCATGY	3 cut(s)	242, 273, 360
OliI	CACNNNNGTG	1 cut(s)	614
PaeI	GCATGC	1 cut(s)	360
PaqCI	CACCTGC	1 cut(s)	49
PciI	ACATGT	1 cut(s)	269
PciSI	GCTCTTC	1 cut(s)	177
PctI	GAATGC	1 cut(s)	633
PdmI	GAANNNNTTC	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	540
PkrI	GCNGC	5 cut(s)	139, 214, 237, 547, 562
PleI	GAGTC	2 cut(s)	251, 368
PpsI	GAGTC	2 cut(s)	251, 368
PscI	ACATGT	1 cut(s)	269
Psp6I	CCWGG	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	319
PspPI	GGNCC	1 cut(s)	479
RseI	CAYNNNNRTG	2 cut(s)	338, 614
SapI	GCTCTTC	1 cut(s)	177
SaqAI	TTAA	2 cut(s)	48, 303
SatI	GCNGC	5 cut(s)	138, 213, 236, 546, 561
Sau3AI	GATC	2 cut(s)	76, 425
Sau96I	GGNCC	1 cut(s)	479
SchI	GAGTC	2 cut(s)	251, 368
ScrFI	CCNGG	1 cut(s)	321
SetI	ASST	5 cut(s)	34, 63, 211, 526, 571
SfaNI	GCATC	1 cut(s)	422
SmiMI	CAYNNNNRTG	2 cut(s)	338, 614
SphI	GCATGC	1 cut(s)	360
Sse9I	AATT	4 cut(s)	216, 276, 461, 506
SspMI	CTAG	1 cut(s)	155
StyD4I	CCNGG	1 cut(s)	319
StyI	CCWWGG	1 cut(s)	308
TaaI	ACNGT	2 cut(s)	458, 639
TasI	AATT	4 cut(s)	216, 276, 461, 506
TfiI	GAWTC	1 cut(s)	540
Tru1I	TTAA	2 cut(s)	48, 303
Tru9I	TTAA	2 cut(s)	48, 303
TseI	GCWGC	5 cut(s)	137, 212, 235, 545, 560
TspDTI	ATGAA	4 cut(s)	216, 516, 564, 618
TspGWI	ACGGA	1 cut(s)	364
XceI	RCATGY	3 cut(s)	242, 273, 360
XmnI	GAANNNNTTC	1 cut(s)	279
XspI	CTAG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.