Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006315.1

Orthogroup ID

OG0005288

Physical Location & Seq

Genomic Coordinates Reverse (-)

13222 .. 13857

Gene Structure 636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006315.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

atggagtgtaataaagtgcaacctgttatgagaaaagttaagaagaagcaggtgaaggatgagttggatcgtcagaaacaggctgagaaaaagaagaggcgattggagaaagctcttgctacttcagctgccatcatttcggaactagaaaagaaaaaacagaagaagaaggaagagcaacagaggcttgatgaagagggtgctgcaattgccgaggctgttgccctgcatgttctattggacgaagactctgatgacaggtgcgaaattgttatgaacaaagatgaagtgcttaagtcctgggattgtcctggtgattttgacttgtttatgggtggaggaagggcttgctatccttatcaggattctgcaaagtgttcacttgaaggaatggggtggggatctaatggttacagatcagggtgcaagtggggtggtttggggaacaatgaatgggcattctcaactaggccttatggaagggattaccgccacccttcattttgccaggaagcaggttgggggccaacaggatttgctgctggtctcattgcggcacaggctgtttcatctctccagattgcagaggattcacatgaaggcacaattgtgcttgatggtatgctaagacggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

211

Amino Acids

23.58

Weight (kDa)

6.83

Isoelectric Point (pI)

43.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25670 AT4G25670 AT4G25690 AT4G25690 AT5G52550
fragaria_vesca	FvH4_7g30190 FvH4_7g30190
malus_domestica	MD01G1207900.v1.1 MD01G1208000.v1.1 MD07G1278500.v1.1 MD07G1278600.v1.1
prunus_persica	Prupe.2G300400_v2.0.a1 Prupe.2G300500_v2.0.a1 Prupe.7G027400_v2.0.a1
pyrus_communis	pycom01g21870 pycom07g25350
rosa_chinensis	RchiOBHm_Chr1g0378241
rosa_laevigata	RLG00000026457
rosa_multiflora	Rmu_sc0006315.1_g000002 Rmu_sc0038642.1_g000002
rosa_roxburghii	Rroxscaffold_4G00280620
rosa_rugosa	Rorug01G0407300 Rorug01G0407400
rosa_samantha	Rh1AG422400 Rh1BG386700 Rh1CG400300 Rh1DG417900
rosa_wichuraiana	Rw1G037500 Rw1G037510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	40
Acc36I	ACCTGC	2 cut(s)	40, 506
AciI	CCGC	2 cut(s)	490, 554
AclWI	GGATC	2 cut(s)	75, 409
AcuI	CTGAAG	1 cut(s)	108
AflII	CTTAAG	1 cut(s)	293
AgsI	TTSAA	1 cut(s)	386
AjnI	CCWGG	3 cut(s)	299, 310, 507
AjuI	GAANNNNNNNTTGG	4 cut(s)	47, 79, 86, 118
AleI	CACNNNNGTG	1 cut(s)	608
AluBI	AGCT	2 cut(s)	113, 128
AluI	AGCT	2 cut(s)	113, 128
Alw26I	GTCTC	1 cut(s)	551
AlwI	GGATC	2 cut(s)	75, 409
AoxI	GGCC	2 cut(s)	470, 524
ApeKI	GCWGC	3 cut(s)	128, 203, 539
AspS9I	GGNCC	1 cut(s)	524
AsuHPI	GGTGA	2 cut(s)	64, 326
BbsI	GAAGAC	1 cut(s)	252
BbvI	GCAGC	3 cut(s)	115, 190, 526
BccI	CCATC	2 cut(s)	140, 611
BcgI	CGANNNNNNTGC	2 cut(s)	203, 237
BciT130I	CCWGG	3 cut(s)	301, 312, 509
BcoDI	GTCTC	1 cut(s)	551
BfaI	CTAG	2 cut(s)	146, 468
BfrI	CTTAAG	1 cut(s)	293
BfuAI	ACCTGC	2 cut(s)	40, 506
BisI	GCNGC	4 cut(s)	129, 204, 540, 555
BlsI	GCNGC	4 cut(s)	130, 205, 541, 556
Bme1390I	CCNGG	3 cut(s)	301, 312, 509
BmgT120I	GGNCC	1 cut(s)	524
BmiI	GGNNCC	1 cut(s)	525
BmrFI	CCNGG	3 cut(s)	301, 312, 509
BpiI	GAAGAC	1 cut(s)	252
BpmI	CTGGAG	1 cut(s)	560
BsaI	GGTCTC	1 cut(s)	551
BsaJI	CCNNGG	2 cut(s)	213, 300
Bse3DI	GCAATG	1 cut(s)	549
BseBI	CCWGG	3 cut(s)	301, 312, 509
BseDI	CCNNGG	2 cut(s)	213, 300
BseGI	GGATG	1 cut(s)	64
BseMI	GCAATG	1 cut(s)	549
BseMII	CTCAG	1 cut(s)	75
BseXI	GCAGC	3 cut(s)	115, 190, 526
BshFI	GGCC	2 cut(s)	472, 526
BsmAI	GTCTC	1 cut(s)	551
BsmI	GAATGC	1 cut(s)	458
BsnI	GGCC	2 cut(s)	472, 526
Bso31I	GGTCTC	1 cut(s)	551
Bsp143I	GATC	3 cut(s)	67, 401, 416
BspACI	CCGC	2 cut(s)	490, 554
BspANI	GGCC	2 cut(s)	472, 526
BspCNI	CTCAG	1 cut(s)	76
BspLI	GGNNCC	1 cut(s)	525
BspMI	ACCTGC	2 cut(s)	40, 506
BspPI	GGATC	2 cut(s)	75, 409
BspQI	GCTCTTC	1 cut(s)	168
BspTI	CTTAAG	1 cut(s)	293
BspTNI	GGTCTC	1 cut(s)	551
BsrDI	GCAATG	1 cut(s)	549
BssECI	CCNNGG	2 cut(s)	213, 300
BssMI	GATC	3 cut(s)	67, 401, 416
Bst2UI	CCWGG	3 cut(s)	301, 312, 509
Bst4CI	ACNGT	1 cut(s)	633
Bst6I	CTCTTC	3 cut(s)	89, 168, 189
BstAFI	CTTAAG	1 cut(s)	293
BstC8I	GCNNGC	1 cut(s)	349
BstDEI	CTNAG	2 cut(s)	84, 626
BstF5I	GGATG	1 cut(s)	64
BstKTI	GATC	3 cut(s)	70, 404, 419
BstMAI	GTCTC	1 cut(s)	551
BstMBI	GATC	3 cut(s)	67, 401, 416
BstMWI	GCNNNNNNNGC	4 cut(s)	125, 184, 209, 560
BstNI	CCWGG	3 cut(s)	301, 312, 509
BstNSI	RCATGY	1 cut(s)	233
BstSCI	CCNGG	3 cut(s)	299, 310, 507
BstV1I	GCAGC	3 cut(s)	115, 190, 526
BstV2I	GAAGAC	1 cut(s)	252
BstX2I	RGATCY	1 cut(s)	401
BstYI	RGATCY	1 cut(s)	401
BsuRI	GGCC	2 cut(s)	472, 526
BtsCI	GGATG	1 cut(s)	64
BveI	ACCTGC	2 cut(s)	40, 506
Cac8I	GCNNGC	1 cut(s)	349
Cfr13I	GGNCC	1 cut(s)	524
CspCI	CAANNNNNGTGG	2 cut(s)	415, 450
CviAII	CATG	2 cut(s)	230, 596
CviJI	RGCY	9 cut(s)	83, 113, 128, 187, 218, 347, 472, 526, 563
CviKI_1	RGCY	9 cut(s)	83, 113, 128, 187, 218, 347, 472, 526, 563
DdeI	CTNAG	2 cut(s)	84, 626
DpnI	GATC	3 cut(s)	69, 403, 418
DpnII	GATC	3 cut(s)	67, 401, 416
Eam1104I	CTCTTC	3 cut(s)	89, 168, 189
EarI	CTCTTC	3 cut(s)	89, 168, 189
Eco147I	AGGCCT	1 cut(s)	472
Eco31I	GGTCTC	1 cut(s)	551
Eco57I	CTGAAG	1 cut(s)	108
EcoRII	CCWGG	3 cut(s)	299, 310, 507
FaeI	CATG	2 cut(s)	233, 599
FaiI	YATR	7 cut(s)	29, 231, 275, 332, 477, 597, 623
FatI	CATG	2 cut(s)	229, 595
Fnu4HI	GCNGC	4 cut(s)	129, 204, 540, 555
FokI	GGATG	1 cut(s)	71
Fsp4HI	GCNGC	4 cut(s)	129, 204, 540, 555
FspBI	CTAG	2 cut(s)	146, 468
GluI	GCNGC	4 cut(s)	129, 204, 540, 555
GsuI	CTGGAG	1 cut(s)	560
HaeIII	GGCC	2 cut(s)	472, 526
Hin1II	CATG	2 cut(s)	233, 599
HinfI	GANTC	3 cut(s)	248, 365, 590
HphI	GGTGA	2 cut(s)	64, 326
Hpy166II	GTNNAC	1 cut(s)	380
Hpy188I	TCNGA	3 cut(s)	75, 142, 253
Hpy188III	TCNNGA	2 cut(s)	362, 577
Hpy8I	GTNNAC	1 cut(s)	380
HpyAV	CCTTC	7 cut(s)	49, 163, 336, 380, 474, 507, 593
HpyCH4III	ACNGT	1 cut(s)	633
HpyCH4V	TGCA	6 cut(s)	19, 206, 229, 371, 426, 584
HpyF10VI	GCNNNNNNNGC	4 cut(s)	125, 184, 209, 560
HpyF3I	CTNAG	2 cut(s)	84, 626
Hsp92II	CATG	2 cut(s)	233, 599
Kzo9I	GATC	3 cut(s)	67, 401, 416
LguI	GCTCTTC	1 cut(s)	168
Lsp1109I	GCAGC	3 cut(s)	115, 190, 526
MaeI	CTAG	2 cut(s)	146, 468
MaeIII	GTNAC	1 cut(s)	410
MalI	GATC	3 cut(s)	69, 403, 418
MboI	GATC	3 cut(s)	67, 401, 416
MboII	GAAGA	7 cut(s)	55, 106, 175, 178, 185, 206, 257
MfeI	CAATTG	2 cut(s)	207, 606
MflI	RGATCY	1 cut(s)	401
MluCI	AATT	3 cut(s)	207, 267, 606
MlyI	GAGTC	1 cut(s)	242
MmeI	TCCRAC	1 cut(s)	45
MnlI	CCTC	6 cut(s)	90, 177, 190, 208, 332, 580
MseI	TTAA	2 cut(s)	39, 294
MslI	CAYNNNNRTG	1 cut(s)	608
MspA1I	CMGCKG	1 cut(s)	128
MspCI	CTTAAG	1 cut(s)	293
MspR9I	CCNGG	3 cut(s)	301, 312, 509
MunI	CAATTG	2 cut(s)	207, 606
Mva1269I	GAATGC	1 cut(s)	458
MvaI	CCWGG	3 cut(s)	301, 312, 509
MwoI	GCNNNNNNNGC	4 cut(s)	125, 184, 209, 560
NdeII	GATC	3 cut(s)	67, 401, 416
NlaIII	CATG	2 cut(s)	233, 599
NlaIV	GGNNCC	1 cut(s)	525
NmeAIII	GCCGAG	1 cut(s)	238
NspI	RCATGY	1 cut(s)	233
OliI	CACNNNNGTG	1 cut(s)	608
PaqCI	CACCTGC	1 cut(s)	40
PceI	AGGCCT	1 cut(s)	472
PciSI	GCTCTTC	1 cut(s)	168
PctI	GAATGC	1 cut(s)	458
PfeI	GAWTC	2 cut(s)	365, 590
PkrI	GCNGC	4 cut(s)	130, 205, 541, 556
PleI	GAGTC	1 cut(s)	242
PpsI	GAGTC	1 cut(s)	242
Psp6I	CCWGG	3 cut(s)	299, 310, 507
PspGI	CCWGG	3 cut(s)	299, 310, 507
PspN4I	GGNNCC	1 cut(s)	525
PspPI	GGNCC	1 cut(s)	524
PsuI	RGATCY	1 cut(s)	401
PvuII	CAGCTG	1 cut(s)	128
RseI	CAYNNNNRTG	1 cut(s)	608
SapI	GCTCTTC	1 cut(s)	168
SaqAI	TTAA	2 cut(s)	39, 294
SatI	GCNGC	4 cut(s)	129, 204, 540, 555
Sau3AI	GATC	3 cut(s)	67, 401, 416
Sau96I	GGNCC	1 cut(s)	524
SchI	GAGTC	1 cut(s)	242
ScrFI	CCNGG	3 cut(s)	301, 312, 509
SetI	ASST	6 cut(s)	25, 54, 115, 130, 263, 520
SmiMI	CAYNNNNRTG	1 cut(s)	608
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
Sse9I	AATT	3 cut(s)	207, 267, 606
SseBI	AGGCCT	1 cut(s)	472
SsiI	CCGC	2 cut(s)	490, 554
SspMI	CTAG	2 cut(s)	146, 468
StuI	AGGCCT	1 cut(s)	472
StyD4I	CCNGG	3 cut(s)	299, 310, 507
TaaI	ACNGT	1 cut(s)	633
TasI	AATT	3 cut(s)	207, 267, 606
TauI	GCSGC	1 cut(s)	557
TfiI	GAWTC	2 cut(s)	365, 590
Tru1I	TTAA	2 cut(s)	39, 294
Tru9I	TTAA	2 cut(s)	39, 294
TseI	GCWGC	3 cut(s)	128, 203, 539
TspDTI	ATGAA	7 cut(s)	207, 290, 300, 465, 489, 558, 612
Vha464I	CTTAAG	1 cut(s)	293
XceI	RCATGY	1 cut(s)	233
XspI	CTAG	2 cut(s)	146, 468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.