Rmu_sc0038642.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0038642.1
OG0005288
Physical Location & Seq
Forward (+)
4955 .. 5599
645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0038642.1_g000002.1.cds

Sequence Viewer

Length: 645 bp
atggataaaatggagtgtaataaagtgcaacctgttatgagaaaagttaagaagaagcaggtgaaggatgagttggatcgtcagaaacaggctgagaaaaagaagaggcgattggagaaagctcttgctacttcagctgccatcatttcggaactagaaaagaaaaaacagaagaagaaggaagagcaacagaggcttgatgaagagggtgctgcaattgccgaggctgttgccctgcatgttctattggacgaagactctgatgacaggtgcgaaattgttatgaacaaagatgaagtgcttaagtcctgggattgtcctggtgattttgacttgtttatgggtggaggaagggcttgctatccttatcaggattctgcaaagtgttcacttgaaggaatggggtggggatctaatggttacagatcagggtgcaagtggggtggtttggggaacaatgaatgggcattctcaactaggccttatggaagggattaccgccacccttcattttgccaggaagcaggttgggggccaacaggatttgctgctggtctcattgcggcacaggctgtttcatctctccagattgcagaggattcacatgaaggcacaattgtgcttgatggtatgctaagacggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

214

Amino Acids

23.95

Weight (kDa)

6.84

Isoelectric Point (pI)

44.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 49
Acc36I ACCTGC 2 cut(s) 49, 515
AciI CCGC 2 cut(s) 499, 563
AclWI GGATC 2 cut(s) 84, 418
AcuI CTGAAG 1 cut(s) 117
AflII CTTAAG 1 cut(s) 302
AgsI TTSAA 1 cut(s) 395
AjnI CCWGG 3 cut(s) 308, 319, 516
AjuI GAANNNNNNNTTGG 4 cut(s) 56, 88, 95, 127
AleI CACNNNNGTG 1 cut(s) 617
AluBI AGCT 2 cut(s) 122, 137
AluI AGCT 2 cut(s) 122, 137
Alw26I GTCTC 1 cut(s) 560
AlwI GGATC 2 cut(s) 84, 418
AoxI GGCC 2 cut(s) 479, 533
ApeKI GCWGC 3 cut(s) 137, 212, 548
AspS9I GGNCC 1 cut(s) 533
AsuHPI GGTGA 2 cut(s) 73, 335
BbsI GAAGAC 1 cut(s) 261
BbvI GCAGC 3 cut(s) 124, 199, 535
BccI CCATC 2 cut(s) 149, 620
BcgI CGANNNNNNTGC 2 cut(s) 212, 246
BciT130I CCWGG 3 cut(s) 310, 321, 518
BcoDI GTCTC 1 cut(s) 560
BfaI CTAG 2 cut(s) 155, 477
BfrI CTTAAG 1 cut(s) 302
BfuAI ACCTGC 2 cut(s) 49, 515
BisI GCNGC 4 cut(s) 138, 213, 549, 564
BlsI GCNGC 4 cut(s) 139, 214, 550, 565
Bme1390I CCNGG 3 cut(s) 310, 321, 518
BmgT120I GGNCC 1 cut(s) 533
BmiI GGNNCC 1 cut(s) 534
BmrFI CCNGG 3 cut(s) 310, 321, 518
BpiI GAAGAC 1 cut(s) 261
BpmI CTGGAG 1 cut(s) 569
BsaI GGTCTC 1 cut(s) 560
BsaJI CCNNGG 2 cut(s) 222, 309
Bse3DI GCAATG 1 cut(s) 558
BseBI CCWGG 3 cut(s) 310, 321, 518
BseDI CCNNGG 2 cut(s) 222, 309
BseGI GGATG 1 cut(s) 73
BseMI GCAATG 1 cut(s) 558
BseMII CTCAG 1 cut(s) 84
BseXI GCAGC 3 cut(s) 124, 199, 535
BshFI GGCC 2 cut(s) 481, 535
BsmAI GTCTC 1 cut(s) 560
BsmI GAATGC 1 cut(s) 467
BsnI GGCC 2 cut(s) 481, 535
Bso31I GGTCTC 1 cut(s) 560
Bsp143I GATC 3 cut(s) 76, 410, 425
BspACI CCGC 2 cut(s) 499, 563
BspANI GGCC 2 cut(s) 481, 535
BspCNI CTCAG 1 cut(s) 85
BspLI GGNNCC 1 cut(s) 534
BspMI ACCTGC 2 cut(s) 49, 515
BspPI GGATC 2 cut(s) 84, 418
BspQI GCTCTTC 1 cut(s) 177
BspTI CTTAAG 1 cut(s) 302
BspTNI GGTCTC 1 cut(s) 560
BsrDI GCAATG 1 cut(s) 558
BssECI CCNNGG 2 cut(s) 222, 309
BssMI GATC 3 cut(s) 76, 410, 425
Bst2UI CCWGG 3 cut(s) 310, 321, 518
Bst4CI ACNGT 1 cut(s) 642
Bst6I CTCTTC 3 cut(s) 98, 177, 198
BstAFI CTTAAG 1 cut(s) 302
BstC8I GCNNGC 1 cut(s) 358
BstDEI CTNAG 2 cut(s) 93, 635
BstF5I GGATG 1 cut(s) 73
BstKTI GATC 3 cut(s) 79, 413, 428
BstMAI GTCTC 1 cut(s) 560
BstMBI GATC 3 cut(s) 76, 410, 425
BstMWI GCNNNNNNNGC 4 cut(s) 134, 193, 218, 569
BstNI CCWGG 3 cut(s) 310, 321, 518
BstNSI RCATGY 1 cut(s) 242
BstSCI CCNGG 3 cut(s) 308, 319, 516
BstV1I GCAGC 3 cut(s) 124, 199, 535
BstV2I GAAGAC 1 cut(s) 261
BstX2I RGATCY 1 cut(s) 410
BstYI RGATCY 1 cut(s) 410
BsuRI GGCC 2 cut(s) 481, 535
BtsCI GGATG 1 cut(s) 73
BveI ACCTGC 2 cut(s) 49, 515
Cac8I GCNNGC 1 cut(s) 358
Cfr13I GGNCC 1 cut(s) 533
CspCI CAANNNNNGTGG 2 cut(s) 424, 459
CviAII CATG 2 cut(s) 239, 605
CviJI RGCY 9 cut(s) 92, 122, 137, 196, 227, 356, 481, 535, 572
CviKI_1 RGCY 9 cut(s) 92, 122, 137, 196, 227, 356, 481, 535, 572
DdeI CTNAG 2 cut(s) 93, 635
DpnI GATC 3 cut(s) 78, 412, 427
DpnII GATC 3 cut(s) 76, 410, 425
Eam1104I CTCTTC 3 cut(s) 98, 177, 198
EarI CTCTTC 3 cut(s) 98, 177, 198
Eco147I AGGCCT 1 cut(s) 481
Eco31I GGTCTC 1 cut(s) 560
Eco57I CTGAAG 1 cut(s) 117
EcoRII CCWGG 3 cut(s) 308, 319, 516
FaeI CATG 2 cut(s) 242, 608
FaiI YATR 7 cut(s) 38, 240, 284, 341, 486, 606, 632
FatI CATG 2 cut(s) 238, 604
Fnu4HI GCNGC 4 cut(s) 138, 213, 549, 564
FokI GGATG 1 cut(s) 80
Fsp4HI GCNGC 4 cut(s) 138, 213, 549, 564
FspBI CTAG 2 cut(s) 155, 477
GluI GCNGC 4 cut(s) 138, 213, 549, 564
GsuI CTGGAG 1 cut(s) 569
HaeIII GGCC 2 cut(s) 481, 535
Hin1II CATG 2 cut(s) 242, 608
HinfI GANTC 3 cut(s) 257, 374, 599
HphI GGTGA 2 cut(s) 73, 335
Hpy166II GTNNAC 1 cut(s) 389
Hpy188I TCNGA 3 cut(s) 84, 151, 262
Hpy188III TCNNGA 2 cut(s) 371, 586
Hpy8I GTNNAC 1 cut(s) 389
HpyAV CCTTC 7 cut(s) 58, 172, 345, 389, 483, 516, 602
HpyCH4III ACNGT 1 cut(s) 642
HpyCH4V TGCA 6 cut(s) 28, 215, 238, 380, 435, 593
HpyF10VI GCNNNNNNNGC 4 cut(s) 134, 193, 218, 569
HpyF3I CTNAG 2 cut(s) 93, 635
Hsp92II CATG 2 cut(s) 242, 608
Kzo9I GATC 3 cut(s) 76, 410, 425
LguI GCTCTTC 1 cut(s) 177
Lsp1109I GCAGC 3 cut(s) 124, 199, 535
MaeI CTAG 2 cut(s) 155, 477
MaeIII GTNAC 1 cut(s) 419
MalI GATC 3 cut(s) 78, 412, 427
MboI GATC 3 cut(s) 76, 410, 425
MboII GAAGA 7 cut(s) 64, 115, 184, 187, 194, 215, 266
MfeI CAATTG 2 cut(s) 216, 615
MflI RGATCY 1 cut(s) 410
MluCI AATT 3 cut(s) 216, 276, 615
MlyI GAGTC 1 cut(s) 251
MmeI TCCRAC 1 cut(s) 54
MnlI CCTC 6 cut(s) 99, 186, 199, 217, 341, 589
MseI TTAA 2 cut(s) 48, 303
MslI CAYNNNNRTG 1 cut(s) 617
MspA1I CMGCKG 1 cut(s) 137
MspCI CTTAAG 1 cut(s) 302
MspR9I CCNGG 3 cut(s) 310, 321, 518
MunI CAATTG 2 cut(s) 216, 615
Mva1269I GAATGC 1 cut(s) 467
MvaI CCWGG 3 cut(s) 310, 321, 518
MwoI GCNNNNNNNGC 4 cut(s) 134, 193, 218, 569
NdeII GATC 3 cut(s) 76, 410, 425
NlaIII CATG 2 cut(s) 242, 608
NlaIV GGNNCC 1 cut(s) 534
NmeAIII GCCGAG 1 cut(s) 247
NspI RCATGY 1 cut(s) 242
OliI CACNNNNGTG 1 cut(s) 617
PaqCI CACCTGC 1 cut(s) 49
PceI AGGCCT 1 cut(s) 481
PciSI GCTCTTC 1 cut(s) 177
PctI GAATGC 1 cut(s) 467
PfeI GAWTC 2 cut(s) 374, 599
PkrI GCNGC 4 cut(s) 139, 214, 550, 565
PleI GAGTC 1 cut(s) 251
PpsI GAGTC 1 cut(s) 251
Psp6I CCWGG 3 cut(s) 308, 319, 516
PspGI CCWGG 3 cut(s) 308, 319, 516
PspN4I GGNNCC 1 cut(s) 534
PspPI GGNCC 1 cut(s) 533
PsuI RGATCY 1 cut(s) 410
PvuII CAGCTG 1 cut(s) 137
RseI CAYNNNNRTG 1 cut(s) 617
SapI GCTCTTC 1 cut(s) 177
SaqAI TTAA 2 cut(s) 48, 303
SatI GCNGC 4 cut(s) 138, 213, 549, 564
Sau3AI GATC 3 cut(s) 76, 410, 425
Sau96I GGNCC 1 cut(s) 533
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 3 cut(s) 310, 321, 518
SetI ASST 6 cut(s) 34, 63, 124, 139, 272, 529
SmiMI CAYNNNNRTG 1 cut(s) 617
SmlI CTYRAG 1 cut(s) 302
SmoI CTYRAG 1 cut(s) 302
Sse9I AATT 3 cut(s) 216, 276, 615
SseBI AGGCCT 1 cut(s) 481
SsiI CCGC 2 cut(s) 499, 563
SspMI CTAG 2 cut(s) 155, 477
StuI AGGCCT 1 cut(s) 481
StyD4I CCNGG 3 cut(s) 308, 319, 516
TaaI ACNGT 1 cut(s) 642
TasI AATT 3 cut(s) 216, 276, 615
TauI GCSGC 1 cut(s) 566
TfiI GAWTC 2 cut(s) 374, 599
Tru1I TTAA 2 cut(s) 48, 303
Tru9I TTAA 2 cut(s) 48, 303
TseI GCWGC 3 cut(s) 137, 212, 548
TspDTI ATGAA 7 cut(s) 216, 299, 309, 474, 498, 567, 621
Vha464I CTTAAG 1 cut(s) 302
XceI RCATGY 1 cut(s) 242
XspI CTAG 2 cut(s) 155, 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.