Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005288

Physical Location & Seq

Genomic Coordinates Reverse (-)

21327712 .. 21330136

Gene Structure 2425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G52550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGATAGCAGTAGCTCGATGTGCAAACAAGCTCAGCCAATTGTTAGAAAAGCCAGGAAGAAAAAAGTAAAAGGTGTAGTGGACCCAATTAAACAAGCTGAGAAGAAAAATAGACGTCTTGAGAAAGCTATTGCTACTTCTGCAGCAATTCGGGCTGAGCTAGAGAAGAAGAAGCAAATGAAGAAGGAAGGACAGCTAGAGGCAGCAGATGAAGAAGATTCAGCAGATGCTGCAAAGAAGAAGCAGGAGAGAGACGAACTGGAGCGTATCAAACAAGCAGAGAATAAAAAGAATCGGCTGGAGAAATCCATCGCTACTTCTGCAGCCATCATGGCTGAGCTAGAGAAGAAGAAGCTTAGAAAACTTGAGGAACAAAAGAGATTGGCTGAGGAAGGTGCTGCCATTGCTGAGAAGAAAAAGAGACGTCTTGAGAAAGCTATTGCTACTACTGCAGCGATCCGCGCTGAGCTAGAGAAGAAGAAGCAAATGAAGAAGGAAGGACAGCTAGACGCAGCAGTTGAAGAAGATTCAGCATATGCTGCAAAGAAGAAGCAGGAGAGAGAGGAACTGGAGCGTATCAAACAAGCAGAGAGGAAAAAGAGACGTATTGAGAAATCCATCGCTACTTCTGCAGCCATCAGGGCTGAGCTAGAGAAGAAGAAGCTTAGAAAACTTGAGGAACAAAGGCGATTGGATGAGGAAGGTGCCGCCATAGCAGAGGCTGTTGCTCTGCACGTCTTACTTGGCGAAGATTGTGATGACTCATACCGAAACACGCTAAACCAAGAAACAGGTTTCAAGCCATGGGACTATACTACCAAAATCAATCTTTTTAGTGGTGGAATAAACAGATTCTTTCCTCACCAACGGTGCTCAAGCTACGCGGTTCATGATAACAACAGAACAAGAGACAGTAACTGGTCGTCAGTCTCATATGAGCCTTTCGCAAGGGGATGGGATAACAACAACAACAACATGGGAATATCAGCTGATTTGTTTGATACTCAAGCTGTGTCGTCACTACAGATCTCTGAGAATACTGACGTTGACGCAATTGTCTTCAATGGGATGTTCAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

360

Amino Acids

41.04

Weight (kDa)

9.49

Isoelectric Point (pI)

42.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25670 AT4G25670 AT4G25690 AT4G25690 AT5G52550
fragaria_vesca	FvH4_7g30190 FvH4_7g30190
malus_domestica	MD01G1207900.v1.1 MD01G1208000.v1.1 MD07G1278500.v1.1 MD07G1278600.v1.1
prunus_persica	Prupe.2G300400_v2.0.a1 Prupe.2G300500_v2.0.a1 Prupe.7G027400_v2.0.a1
pyrus_communis	pycom01g21870 pycom07g25350
rosa_chinensis	RchiOBHm_Chr1g0378241
rosa_laevigata	RLG00000026457
rosa_multiflora	Rmu_sc0006315.1_g000002 Rmu_sc0038642.1_g000002
rosa_roxburghii	Rroxscaffold_4G00280620
rosa_rugosa	Rorug01G0407300 Rorug01G0407400
rosa_samantha	Rh1AG422400 Rh1BG386700 Rh1CG400300 Rh1DG417900
rosa_wichuraiana	Rw1G037500 Rw1G037510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1055
AatII	GACGTC	2 cut(s)	118, 427
AccB1I	GGYRCC	1 cut(s)	704
AccII	CGCG	2 cut(s)	462, 884
AciI	CCGC	3 cut(s)	460, 708, 884
AclWI	GGATC	1 cut(s)	451
AcyI	GRCGYC	2 cut(s)	115, 424
AgsI	TTSAA	3 cut(s)	521, 799, 1063
AjiI	CACGTC	1 cut(s)	736
AjnI	CCWGG	1 cut(s)	53
Alw21I	GWGCWC	1 cut(s)	875
Alw26I	GTCTC	5 cut(s)	246, 415, 595, 903, 934
AlwI	GGATC	1 cut(s)	451
AlwNI	CAGNNNCTG	3 cut(s)	230, 722, 918
ApeKI	GCWGC	9 cut(s)	143, 203, 230, 323, 398, 452, 512, 539, 632
AspLEI	GCGC	1 cut(s)	464
AspS9I	GGNCC	1 cut(s)	82
AsuHPI	GGTGA	1 cut(s)	854
AvaII	GGWCC	1 cut(s)	82
BanI	GGYRCC	1 cut(s)	704
BbsI	GAAGAC	1 cut(s)	1051
Bbv12I	GWGCWC	1 cut(s)	875
BbvCI	CCTCAGC	1 cut(s)	387
BbvI	GCAGC	9 cut(s)	155, 215, 217, 335, 385, 464, 524, 526, 644
BccI	CCATC	5 cut(s)	317, 335, 626, 644, 948
BciT130I	CCWGG	1 cut(s)	55
BcoDI	GTCTC	5 cut(s)	246, 415, 595, 903, 934
BfaI	CTAG	6 cut(s)	161, 197, 341, 470, 506, 650
BfmI	CTRYAG	5 cut(s)	141, 321, 450, 630, 1022
BglI	GCCNNNNNGGC	2 cut(s)	332, 641
BglII	AGATCT	1 cut(s)	1026
BlpI	GCTNAGC	5 cut(s)	33, 156, 336, 465, 645
Bme1390I	CCNGG	1 cut(s)	55
Bme18I	GGWCC	1 cut(s)	82
BmgBI	CACGTC	1 cut(s)	736
BmgT120I	GGNCC	1 cut(s)	82
BmiI	GGNNCC	2 cut(s)	84, 706
BmrFI	CCNGG	1 cut(s)	55
BmsI	GCATC	1 cut(s)	217
BpiI	GAAGAC	1 cut(s)	1051
BpmI	CTGGAG	3 cut(s)	281, 320, 590
Bpu10I	CCTNAGC	1 cut(s)	387
Bpu1102I	GCTNAGC	5 cut(s)	33, 156, 336, 465, 645
BpuEI	CTTGAG	6 cut(s)	140, 386, 449, 695, 859, 990
BsaHI	GRCGYC	2 cut(s)	115, 424
BsaJI	CCNNGG	1 cut(s)	803
Bse1I	ACTGG	3 cut(s)	264, 573, 923
Bse3DI	GCAATG	1 cut(s)	402
BseBI	CCWGG	1 cut(s)	55
BseDI	CCNNGG	1 cut(s)	803
BseGI	GGATG	3 cut(s)	700, 959, 1074
BseMI	GCAATG	1 cut(s)	402
BseMII	CTCAG	9 cut(s)	47, 90, 147, 327, 378, 399, 456, 636, 1023
BseNI	ACTGG	3 cut(s)	264, 573, 923
BseXI	GCAGC	9 cut(s)	155, 215, 217, 335, 385, 464, 524, 526, 644
BsgI	GTGCAG	1 cut(s)	716
Bsh1236I	CGCG	2 cut(s)	462, 884
BshNI	GGYRCC	1 cut(s)	704
BsiHKAI	GWGCWC	1 cut(s)	875
BslFI	GGGAC	1 cut(s)	821
BsmAI	GTCTC	5 cut(s)	246, 415, 595, 903, 934
BsmBI	CGTCTC	3 cut(s)	246, 415, 595
BsmFI	GGGAC	1 cut(s)	821
Bsp1286I	GDGCHC	1 cut(s)	875
Bsp143I	GATC	2 cut(s)	456, 1026
Bsp1720I	GCTNAGC	5 cut(s)	33, 156, 336, 465, 645
Bsp19I	CCATGG	1 cut(s)	803
BspACI	CCGC	3 cut(s)	460, 708, 884
BspCNI	CTCAG	9 cut(s)	46, 91, 148, 328, 379, 400, 457, 637, 1024
BspFNI	CGCG	2 cut(s)	462, 884
BspHI	TCATGA	1 cut(s)	889
BspLI	GGNNCC	2 cut(s)	84, 706
BspMAI	CTGCAG	4 cut(s)	145, 325, 454, 634
BspPI	GGATC	1 cut(s)	451
BspT107I	GGYRCC	1 cut(s)	704
BsrDI	GCAATG	1 cut(s)	402
BsrI	ACTGG	3 cut(s)	264, 573, 923
BssECI	CCNNGG	1 cut(s)	803
BssMI	GATC	2 cut(s)	456, 1026
BssNI	GRCGYC	2 cut(s)	115, 424
BssT1I	CCWWGG	1 cut(s)	803
Bst2UI	CCWGG	1 cut(s)	55
Bst4CI	ACNGT	2 cut(s)	870, 914
BstACI	GRCGYC	2 cut(s)	115, 424
BstAPI	GCANNNNNTGC	2 cut(s)	230, 539
BstDSI	CCRYGG	1 cut(s)	803
BstF5I	GGATG	3 cut(s)	700, 959, 1074
BstFNI	CGCG	2 cut(s)	462, 884
BstHHI	GCGC	1 cut(s)	464
BstKTI	GATC	2 cut(s)	459, 1029
BstMAI	GTCTC	5 cut(s)	246, 415, 595, 903, 934
BstMBI	GATC	2 cut(s)	456, 1026
BstNI	CCWGG	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	53
BstSFI	CTRYAG	5 cut(s)	141, 321, 450, 630, 1022
BstUI	CGCG	2 cut(s)	462, 884
BstV1I	GCAGC	9 cut(s)	155, 215, 217, 335, 385, 464, 524, 526, 644
BstV2I	GAAGAC	1 cut(s)	1051
BstX2I	RGATCY	1 cut(s)	1026
BstYI	RGATCY	1 cut(s)	1026
BtgI	CCRYGG	1 cut(s)	803
BtgZI	GCGATG	2 cut(s)	295, 604
BtrI	CACGTC	1 cut(s)	736
BtsCI	GGATG	3 cut(s)	700, 959, 1074
CaiI	CAGNNNCTG	3 cut(s)	230, 722, 918
CciI	TCATGA	1 cut(s)	889
CfoI	GCGC	1 cut(s)	464
Cfr13I	GGNCC	1 cut(s)	82
CseI	GACGC	2 cut(s)	518, 1058
CviAII	CATG	4 cut(s)	331, 804, 890, 976
DpnI	GATC	2 cut(s)	458, 1028
DpnII	GATC	2 cut(s)	456, 1026
DrdI	GACNNNNNNGTC	1 cut(s)	1055
DseDI	GACNNNNNNGTC	1 cut(s)	1055
Eco130I	CCWWGG	1 cut(s)	803
Eco47I	GGWCC	1 cut(s)	82
EcoRII	CCWGG	1 cut(s)	53
EcoT14I	CCWWGG	1 cut(s)	803
ErhI	CCWWGG	1 cut(s)	803
Esp3I	CGTCTC	3 cut(s)	246, 415, 595
FaeI	CATG	4 cut(s)	334, 807, 893, 979
FaqI	GGGAC	1 cut(s)	821
FatI	CATG	4 cut(s)	330, 803, 889, 975
FauNDI	CATATG	2 cut(s)	535, 934
FokI	GGATG	2 cut(s)	707, 966
FspBI	CTAG	6 cut(s)	161, 197, 341, 470, 506, 650
GlaI	GCGC	1 cut(s)	463
GsuI	CTGGAG	3 cut(s)	281, 320, 590
HgaI	GACGC	2 cut(s)	518, 1058
HhaI	GCGC	1 cut(s)	464
Hin1I	GRCGYC	2 cut(s)	115, 424
Hin1II	CATG	4 cut(s)	334, 807, 893, 979
Hin6I	GCGC	1 cut(s)	462
HinP1I	GCGC	1 cut(s)	462
HincII	GTYRAC	1 cut(s)	1048
HindII	GTYRAC	1 cut(s)	1048
HindIII	AAGCTT	2 cut(s)	353, 662
HinfI	GANTC	5 cut(s)	218, 292, 527, 761, 852
HphI	GGTGA	1 cut(s)	854
Hpy166II	GTNNAC	2 cut(s)	82, 1048
Hpy188I	TCNGA	2 cut(s)	1033, 1076
Hpy188III	TCNNGA	3 cut(s)	119, 428, 890
Hpy8I	GTNNAC	2 cut(s)	82, 1048
HpyAV	CCTTC	6 cut(s)	178, 182, 386, 487, 491, 695
HpyCH4III	ACNGT	2 cut(s)	870, 914
HpyCH4IV	ACGT	5 cut(s)	115, 424, 604, 735, 1044
HpyCH4V	TGCA	8 cut(s)	24, 143, 233, 323, 452, 542, 632, 733
HpySE526I	ACGT	5 cut(s)	115, 424, 604, 735, 1044
Hsp92I	GRCGYC	2 cut(s)	115, 424
Hsp92II	CATG	4 cut(s)	334, 807, 893, 979
HspAI	GCGC	1 cut(s)	462
Kzo9I	GATC	2 cut(s)	456, 1026
LmnI	GCTCC	2 cut(s)	262, 571
Lsp1109I	GCAGC	9 cut(s)	155, 215, 217, 335, 385, 464, 524, 526, 644
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	6 cut(s)	161, 197, 341, 470, 506, 650
MaeII	ACGT	5 cut(s)	115, 424, 604, 735, 1044
MaeIII	GTNAC	2 cut(s)	914, 1017
MalI	GATC	2 cut(s)	458, 1028
MboI	GATC	2 cut(s)	456, 1026
MfeI	CAATTG	2 cut(s)	39, 1053
MflI	RGATCY	1 cut(s)	1026
MhlI	GDGCHC	1 cut(s)	875
MluCI	AATT	4 cut(s)	39, 87, 147, 1053
MlyI	GAGTC	1 cut(s)	755
MnlI	CCTC	9 cut(s)	193, 361, 382, 556, 585, 670, 691, 712, 870
MseI	TTAA	1 cut(s)	90
MspA1I	CMGCKG	1 cut(s)	989
MspR9I	CCNGG	1 cut(s)	55
MunI	CAATTG	2 cut(s)	39, 1053
MvaI	CCWGG	1 cut(s)	55
MvnI	CGCG	2 cut(s)	462, 884
NcoI	CCATGG	1 cut(s)	803
NdeI	CATATG	2 cut(s)	535, 934
NdeII	GATC	2 cut(s)	456, 1026
NlaIII	CATG	4 cut(s)	334, 807, 893, 979
NlaIV	GGNNCC	2 cut(s)	84, 706
NmuCI	GTSAC	1 cut(s)	1017
PagI	TCATGA	1 cut(s)	889
PfeI	GAWTC	4 cut(s)	218, 292, 527, 852
PleI	GAGTC	1 cut(s)	755
PpsI	GAGTC	1 cut(s)	755
Psp6I	CCWGG	1 cut(s)	53
PspGI	CCWGG	1 cut(s)	53
PspN4I	GGNNCC	2 cut(s)	84, 706
PspPI	GGNCC	1 cut(s)	82
PstI	CTGCAG	4 cut(s)	145, 325, 454, 634
PstNI	CAGNNNCTG	3 cut(s)	230, 722, 918
PsuI	RGATCY	1 cut(s)	1026
PvuII	CAGCTG	1 cut(s)	989
SaqAI	TTAA	1 cut(s)	90
Sau3AI	GATC	2 cut(s)	456, 1026
Sau96I	GGNCC	1 cut(s)	82
SchI	GAGTC	1 cut(s)	755
ScrFI	CCNGG	1 cut(s)	55
SduI	GDGCHC	1 cut(s)	875
SfaNI	GCATC	1 cut(s)	217
SfcI	CTRYAG	5 cut(s)	141, 321, 450, 630, 1022
SinI	GGWCC	1 cut(s)	82
SmlI	CTYRAG	6 cut(s)	119, 365, 428, 674, 874, 1005
SmoI	CTYRAG	6 cut(s)	119, 365, 428, 674, 874, 1005
Sse9I	AATT	4 cut(s)	39, 87, 147, 1053
SsiI	CCGC	3 cut(s)	460, 708, 884
SspMI	CTAG	6 cut(s)	161, 197, 341, 470, 506, 650
StyD4I	CCNGG	1 cut(s)	53
StyI	CCWWGG	1 cut(s)	803
TaaI	ACNGT	2 cut(s)	870, 914
TaiI	ACGT	5 cut(s)	118, 427, 607, 738, 1047
TaqI	TCGA	1 cut(s)	17
TasI	AATT	4 cut(s)	39, 87, 147, 1053
TauI	GCSGC	1 cut(s)	710
TfiI	GAWTC	4 cut(s)	218, 292, 527, 852
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TseFI	GTSAC	1 cut(s)	1017
TseI	GCWGC	9 cut(s)	143, 203, 230, 323, 398, 452, 512, 539, 632
Tsp45I	GTSAC	1 cut(s)	1017
TspDTI	ATGAA	4 cut(s)	194, 225, 503, 878
VpaK11BI	GGWCC	1 cut(s)	82
XspI	CTAG	6 cut(s)	161, 197, 341, 470, 506, 650
ZraI	GACGTC	2 cut(s)	116, 425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.