RLG00000026457

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0005288
Physical Location & Seq
Forward (+)
3161200 .. 3161835
636 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026457

Sequence Viewer

Length: 636 bp
ATGGAGTGTAATAAAGTGCAACCTGTTATGAGAAAAGTTAAGAAGAAGCAGGTGAAGGATGAGTTGGATCGTCAGAAACAGGCTGAGAAAAAGAAGAGGCGCTTGGAGAAAGCTCTTGCTACTTCAGCTGCCATAATTTCGGAACTAGAAAAGAAAAAACAGAAGAAGAAGGAAGAGCAACAGAGGCTTGATGAAGAGGGTGCTGCAATTGCCGAGGCTGTTGCCCTGCATGTTCTATTGGACGAAGACTCTGATGAAAGGTGCAAAATTGTTTTGAACAAAGATGAAATGCTCAAGTCCTGGGATTGTCCTGGTGATTTTGACTTGTTTATGGGTGGAGGAAGGGATTGCTATCCTTATCAGGATTCTGCAAAGTGTTCACTTGAAGGAATGGGGTGGGGATCTAATGATTACAGATCAGGGTGCAAGTGGGGTGGTTTGGGGAACAATGAATGGTCATTCTCAACTGGGCCTTATGGAAGGGATTACCGCCACCCTTCATTTTGCCAGGAAGCAGGTTGGGGGCCAACAGGATTTGCTGCTGGTCTCATTGCGGCACAGGCTGTTTCATCTCTCCAGATTGCAGAGGATTCACATGAAGGCACAATTGTGCTTGATGGTATGCTAAGACGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

23.62

Weight (kDa)

6.35

Isoelectric Point (pI)

41.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 40
Acc36I ACCTGC 2 cut(s) 40, 506
AciI CCGC 2 cut(s) 490, 554
AclWI GGATC 2 cut(s) 75, 409
AcuI CTGAAG 1 cut(s) 108
AgsI TTSAA 2 cut(s) 277, 386
AjnI CCWGG 3 cut(s) 299, 310, 507
AjuI GAANNNNNNNTTGG 4 cut(s) 47, 79, 86, 118
AleI CACNNNNGTG 1 cut(s) 608
AluBI AGCT 2 cut(s) 113, 128
AluI AGCT 2 cut(s) 113, 128
Alw26I GTCTC 1 cut(s) 551
AlwI GGATC 2 cut(s) 75, 409
AoxI GGCC 2 cut(s) 470, 524
ApeKI GCWGC 3 cut(s) 128, 203, 539
AspLEI GCGC 1 cut(s) 102
AspS9I GGNCC 2 cut(s) 470, 524
AsuHPI GGTGA 2 cut(s) 64, 326
BbsI GAAGAC 1 cut(s) 252
BbvI GCAGC 3 cut(s) 115, 190, 526
BccI CCATC 1 cut(s) 611
BcgI CGANNNNNNTGC 2 cut(s) 203, 237
BciT130I CCWGG 3 cut(s) 301, 312, 509
BcoDI GTCTC 1 cut(s) 551
BfaI CTAG 1 cut(s) 146
BfoI RGCGCY 1 cut(s) 103
BfuAI ACCTGC 2 cut(s) 40, 506
BisI GCNGC 4 cut(s) 129, 204, 540, 555
BlsI GCNGC 4 cut(s) 130, 205, 541, 556
Bme1390I CCNGG 3 cut(s) 301, 312, 509
BmgT120I GGNCC 2 cut(s) 470, 524
BmiI GGNNCC 1 cut(s) 525
BmrFI CCNGG 3 cut(s) 301, 312, 509
BmrI ACTGGG 1 cut(s) 477
BmuI ACTGGG 1 cut(s) 477
BpiI GAAGAC 1 cut(s) 252
BpmI CTGGAG 1 cut(s) 560
BpuEI CTTGAG 1 cut(s) 278
BsaBI GATNNNNATC 1 cut(s) 351
BsaI GGTCTC 1 cut(s) 551
BsaJI CCNNGG 2 cut(s) 213, 300
Bse1I ACTGG 1 cut(s) 472
Bse3DI GCAATG 1 cut(s) 549
Bse8I GATNNNNATC 1 cut(s) 351
BseBI CCWGG 3 cut(s) 301, 312, 509
BseDI CCNNGG 2 cut(s) 213, 300
BseGI GGATG 1 cut(s) 64
BseJI GATNNNNATC 1 cut(s) 351
BseMI GCAATG 1 cut(s) 549
BseMII CTCAG 1 cut(s) 75
BseNI ACTGG 1 cut(s) 472
BseXI GCAGC 3 cut(s) 115, 190, 526
BshFI GGCC 2 cut(s) 472, 526
BsmAI GTCTC 1 cut(s) 551
BsnI GGCC 2 cut(s) 472, 526
Bso31I GGTCTC 1 cut(s) 551
Bsp143I GATC 3 cut(s) 67, 401, 416
BspACI CCGC 2 cut(s) 490, 554
BspANI GGCC 2 cut(s) 472, 526
BspCNI CTCAG 1 cut(s) 76
BspLI GGNNCC 1 cut(s) 525
BspMI ACCTGC 2 cut(s) 40, 506
BspPI GGATC 2 cut(s) 75, 409
BspQI GCTCTTC 1 cut(s) 168
BspTNI GGTCTC 1 cut(s) 551
BsrDI GCAATG 1 cut(s) 549
BsrI ACTGG 1 cut(s) 472
BssECI CCNNGG 2 cut(s) 213, 300
BssMI GATC 3 cut(s) 67, 401, 416
Bst2UI CCWGG 3 cut(s) 301, 312, 509
Bst4CI ACNGT 1 cut(s) 633
Bst6I CTCTTC 3 cut(s) 89, 168, 189
BstDEI CTNAG 2 cut(s) 84, 626
BstF5I GGATG 1 cut(s) 64
BstH2I RGCGCY 1 cut(s) 103
BstHHI GCGC 1 cut(s) 102
BstKTI GATC 3 cut(s) 70, 404, 419
BstMAI GTCTC 1 cut(s) 551
BstMBI GATC 3 cut(s) 67, 401, 416
BstMWI GCNNNNNNNGC 4 cut(s) 125, 184, 209, 560
BstNI CCWGG 3 cut(s) 301, 312, 509
BstNSI RCATGY 1 cut(s) 233
BstSCI CCNGG 3 cut(s) 299, 310, 507
BstV1I GCAGC 3 cut(s) 115, 190, 526
BstV2I GAAGAC 1 cut(s) 252
BstX2I RGATCY 1 cut(s) 401
BstYI RGATCY 1 cut(s) 401
BsuRI GGCC 2 cut(s) 472, 526
BtsCI GGATG 1 cut(s) 64
BveI ACCTGC 2 cut(s) 40, 506
CfoI GCGC 1 cut(s) 102
Cfr13I GGNCC 2 cut(s) 470, 524
CspCI CAANNNNNGTGG 2 cut(s) 415, 450
CviAII CATG 2 cut(s) 230, 596
CviJI RGCY 8 cut(s) 83, 113, 128, 187, 218, 472, 526, 563
CviKI_1 RGCY 8 cut(s) 83, 113, 128, 187, 218, 472, 526, 563
DdeI CTNAG 2 cut(s) 84, 626
DpnI GATC 3 cut(s) 69, 403, 418
DpnII GATC 3 cut(s) 67, 401, 416
Eam1104I CTCTTC 3 cut(s) 89, 168, 189
EarI CTCTTC 3 cut(s) 89, 168, 189
Eco31I GGTCTC 1 cut(s) 551
Eco57I CTGAAG 1 cut(s) 108
EcoRII CCWGG 3 cut(s) 299, 310, 507
FaeI CATG 2 cut(s) 233, 599
FaiI YATR 7 cut(s) 29, 134, 231, 332, 477, 597, 623
FalI AAGNNNNNCTT 2 cut(s) 86, 118
FatI CATG 2 cut(s) 229, 595
Fnu4HI GCNGC 4 cut(s) 129, 204, 540, 555
FokI GGATG 1 cut(s) 71
Fsp4HI GCNGC 4 cut(s) 129, 204, 540, 555
FspBI CTAG 1 cut(s) 146
GlaI GCGC 1 cut(s) 101
GluI GCNGC 4 cut(s) 129, 204, 540, 555
GsuI CTGGAG 1 cut(s) 560
HaeII RGCGCY 1 cut(s) 103
HaeIII GGCC 2 cut(s) 472, 526
HhaI GCGC 1 cut(s) 102
Hin1II CATG 2 cut(s) 233, 599
Hin6I GCGC 1 cut(s) 100
HinP1I GCGC 1 cut(s) 100
HinfI GANTC 3 cut(s) 248, 365, 590
HphI GGTGA 2 cut(s) 64, 326
Hpy166II GTNNAC 1 cut(s) 380
Hpy188I TCNGA 3 cut(s) 75, 142, 253
Hpy188III TCNNGA 2 cut(s) 362, 577
Hpy8I GTNNAC 1 cut(s) 380
HpyAV CCTTC 7 cut(s) 49, 163, 336, 380, 474, 507, 593
HpyCH4III ACNGT 1 cut(s) 633
HpyCH4V TGCA 7 cut(s) 19, 206, 229, 264, 371, 426, 584
HpyF10VI GCNNNNNNNGC 4 cut(s) 125, 184, 209, 560
HpyF3I CTNAG 2 cut(s) 84, 626
Hsp92II CATG 2 cut(s) 233, 599
HspAI GCGC 1 cut(s) 100
Kzo9I GATC 3 cut(s) 67, 401, 416
LguI GCTCTTC 1 cut(s) 168
Lsp1109I GCAGC 3 cut(s) 115, 190, 526
MaeI CTAG 1 cut(s) 146
MalI GATC 3 cut(s) 69, 403, 418
MboI GATC 3 cut(s) 67, 401, 416
MboII GAAGA 7 cut(s) 55, 106, 175, 178, 185, 206, 257
MfeI CAATTG 2 cut(s) 207, 606
MflI RGATCY 1 cut(s) 401
MluCI AATT 4 cut(s) 135, 207, 267, 606
MlyI GAGTC 1 cut(s) 242
MmeI TCCRAC 1 cut(s) 45
MnlI CCTC 6 cut(s) 90, 177, 190, 208, 332, 580
MseI TTAA 1 cut(s) 39
MslI CAYNNNNRTG 1 cut(s) 608
MspA1I CMGCKG 1 cut(s) 128
MspR9I CCNGG 3 cut(s) 301, 312, 509
MunI CAATTG 2 cut(s) 207, 606
MvaI CCWGG 3 cut(s) 301, 312, 509
MwoI GCNNNNNNNGC 4 cut(s) 125, 184, 209, 560
NdeII GATC 3 cut(s) 67, 401, 416
NlaIII CATG 2 cut(s) 233, 599
NlaIV GGNNCC 1 cut(s) 525
NmeAIII GCCGAG 1 cut(s) 238
NspI RCATGY 1 cut(s) 233
OliI CACNNNNGTG 1 cut(s) 608
PaqCI CACCTGC 1 cut(s) 40
PciSI GCTCTTC 1 cut(s) 168
PfeI GAWTC 2 cut(s) 365, 590
PkrI GCNGC 4 cut(s) 130, 205, 541, 556
PleI GAGTC 1 cut(s) 242
PpsI GAGTC 1 cut(s) 242
Psp6I CCWGG 3 cut(s) 299, 310, 507
PspGI CCWGG 3 cut(s) 299, 310, 507
PspN4I GGNNCC 1 cut(s) 525
PspPI GGNCC 2 cut(s) 470, 524
PsuI RGATCY 1 cut(s) 401
PvuII CAGCTG 1 cut(s) 128
RseI CAYNNNNRTG 1 cut(s) 608
SapI GCTCTTC 1 cut(s) 168
SaqAI TTAA 1 cut(s) 39
SatI GCNGC 4 cut(s) 129, 204, 540, 555
Sau3AI GATC 3 cut(s) 67, 401, 416
Sau96I GGNCC 2 cut(s) 470, 524
SchI GAGTC 1 cut(s) 242
ScrFI CCNGG 3 cut(s) 301, 312, 509
SetI ASST 6 cut(s) 25, 54, 115, 130, 263, 520
SmiMI CAYNNNNRTG 1 cut(s) 608
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
Sse9I AATT 4 cut(s) 135, 207, 267, 606
SsiI CCGC 2 cut(s) 490, 554
SspMI CTAG 1 cut(s) 146
StyD4I CCNGG 3 cut(s) 299, 310, 507
TaaI ACNGT 1 cut(s) 633
TasI AATT 4 cut(s) 135, 207, 267, 606
TauI GCSGC 1 cut(s) 557
TfiI GAWTC 2 cut(s) 365, 590
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
TseI GCWGC 3 cut(s) 128, 203, 539
TspDTI ATGAA 7 cut(s) 207, 270, 300, 465, 489, 558, 612
XceI RCATGY 1 cut(s) 233
XspI CTAG 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.