BEST Arabidopsis thaliana protein match is
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G25670 AT4G25670 AT4G25690 AT4G25690 AT5G52550 |
| fragaria_vesca | FvH4_7g30190 FvH4_7g30190 |
| malus_domestica | MD01G1207900.v1.1 MD01G1208000.v1.1 MD07G1278500.v1.1 MD07G1278600.v1.1 |
| prunus_persica | Prupe.2G300400_v2.0.a1 Prupe.2G300500_v2.0.a1 Prupe.7G027400_v2.0.a1 |
| pyrus_communis | pycom01g21870 pycom07g25350 |
| rosa_chinensis | RchiOBHm_Chr1g0378241 |
| rosa_laevigata | RLG00000026457 |
| rosa_multiflora | Rmu_sc0006315.1_g000002 Rmu_sc0038642.1_g000002 |
| rosa_roxburghii | Rroxscaffold_4G00280620 |
| rosa_rugosa | Rorug01G0407300 Rorug01G0407400 |
| rosa_samantha | Rh1AG422400 Rh1BG386700 Rh1CG400300 Rh1DG417900 |
| rosa_wichuraiana | Rw1G037500 Rw1G037510 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 368 |
| AclWI | GGATC | 2 cut(s) | 12, 318 |
| AcsI | RAATTY | 1 cut(s) | 71 |
| AdeI | CACNNNGTG | 1 cut(s) | 15 |
| AflIII | ACRYGT | 1 cut(s) | 9 |
| AgsI | TTSAA | 2 cut(s) | 158, 374 |
| AjiI | CACGTC | 1 cut(s) | 241 |
| AluBI | AGCT | 6 cut(s) | 92, 122, 154, 212, 227, 363 |
| AluI | AGCT | 6 cut(s) | 92, 122, 154, 212, 227, 363 |
| Alw26I | GTCTC | 2 cut(s) | 100, 551 |
| AlwI | GGATC | 2 cut(s) | 12, 318 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 227 |
| Ama87I | CYCGRG | 1 cut(s) | 273 |
| ApeKI | GCWGC | 3 cut(s) | 137, 212, 494 |
| ApoI | RAATTY | 1 cut(s) | 71 |
| AsuNHI | GCTAGC | 1 cut(s) | 359 |
| AvaI | CYCGRG | 1 cut(s) | 273 |
| BbsI | GAAGAC | 1 cut(s) | 544 |
| BbvI | GCAGC | 3 cut(s) | 149, 199, 481 |
| BcoDI | GTCTC | 2 cut(s) | 100, 551 |
| BfaI | CTAG | 3 cut(s) | 42, 360, 407 |
| BfmI | CTRYAG | 3 cut(s) | 135, 480, 515 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 146 |
| BisI | GCNGC | 3 cut(s) | 138, 213, 495 |
| BlpI | GCTNAGC | 1 cut(s) | 150 |
| BlsI | GCNGC | 3 cut(s) | 139, 214, 496 |
| BmeT110I | CYCGRG | 1 cut(s) | 273 |
| BmgBI | CACGTC | 1 cut(s) | 241 |
| BmrI | ACTGGG | 1 cut(s) | 257 |
| BmtI | GCTAGC | 1 cut(s) | 363 |
| BmuI | ACTGGG | 1 cut(s) | 257 |
| BpiI | GAAGAC | 1 cut(s) | 544 |
| Bpu10I | CCTNAGC | 1 cut(s) | 498 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 150 |
| Bse1I | ACTGG | 3 cut(s) | 35, 252, 425 |
| BseGI | GGATG | 1 cut(s) | 457 |
| BseMII | CTCAG | 4 cut(s) | 84, 141, 512, 516 |
| BseNI | ACTGG | 3 cut(s) | 35, 252, 425 |
| BseXI | GCAGC | 3 cut(s) | 149, 199, 481 |
| BsgI | GTGCAG | 1 cut(s) | 221 |
| BsiHKCI | CYCGRG | 1 cut(s) | 273 |
| BsmAI | GTCTC | 2 cut(s) | 100, 551 |
| BsmBI | CGTCTC | 2 cut(s) | 100, 551 |
| BsoBI | CYCGRG | 1 cut(s) | 273 |
| Bsp143I | GATC | 3 cut(s) | 4, 76, 310 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 150 |
| BspACI | CCGC | 1 cut(s) | 368 |
| BspCNI | CTCAG | 4 cut(s) | 85, 142, 511, 517 |
| BspHI | TCATGA | 1 cut(s) | 444 |
| BspMAI | CTGCAG | 2 cut(s) | 139, 484 |
| BspOI | GCTAGC | 1 cut(s) | 363 |
| BspPI | GGATC | 2 cut(s) | 12, 318 |
| BsrI | ACTGG | 3 cut(s) | 35, 252, 425 |
| BssMI | GATC | 3 cut(s) | 4, 76, 310 |
| Bst6I | CTCTTC | 1 cut(s) | 167 |
| BstC8I | GCNNGC | 2 cut(s) | 20, 361 |
| BstDEI | CTNAG | 4 cut(s) | 93, 150, 498, 525 |
| BstF5I | GGATG | 1 cut(s) | 457 |
| BstKTI | GATC | 3 cut(s) | 7, 79, 313 |
| BstMAI | GTCTC | 2 cut(s) | 100, 551 |
| BstMBI | GATC | 3 cut(s) | 4, 76, 310 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 134, 146, 218, 365, 500 |
| BstSFI | CTRYAG | 3 cut(s) | 135, 480, 515 |
| BstV1I | GCAGC | 3 cut(s) | 149, 199, 481 |
| BstV2I | GAAGAC | 1 cut(s) | 544 |
| BstX2I | RGATCY | 1 cut(s) | 310 |
| BstYI | RGATCY | 1 cut(s) | 310 |
| BtrI | CACGTC | 1 cut(s) | 241 |
| BtsCI | GGATG | 1 cut(s) | 457 |
| BtsIMutI | CAGTG | 1 cut(s) | 432 |
| Cac8I | GCNNGC | 2 cut(s) | 20, 361 |
| CaiI | CAGNNNCTG | 1 cut(s) | 227 |
| CciI | TCATGA | 1 cut(s) | 444 |
| CseI | GACGC | 1 cut(s) | 539 |
| CviAII | CATG | 3 cut(s) | 59, 445, 469 |
| DdeI | CTNAG | 4 cut(s) | 93, 150, 498, 525 |
| DpnI | GATC | 3 cut(s) | 6, 78, 312 |
| DpnII | GATC | 3 cut(s) | 4, 76, 310 |
| DraIII | CACNNNGTG | 1 cut(s) | 15 |
| Eam1104I | CTCTTC | 1 cut(s) | 167 |
| EarI | CTCTTC | 1 cut(s) | 167 |
| Eco32I | GATATC | 1 cut(s) | 522 |
| Eco88I | CYCGRG | 1 cut(s) | 273 |
| EcoRV | GATATC | 1 cut(s) | 522 |
| Esp3I | CGTCTC | 2 cut(s) | 100, 551 |
| FaeI | CATG | 3 cut(s) | 62, 448, 472 |
| FaiI | YATR | 9 cut(s) | 60, 339, 366, 402, 433, 435, 446, 470, 549 |
| FatI | CATG | 3 cut(s) | 58, 444, 468 |
| Fnu4HI | GCNGC | 3 cut(s) | 138, 213, 495 |
| FokI | GGATG | 1 cut(s) | 464 |
| Fsp4HI | GCNGC | 3 cut(s) | 138, 213, 495 |
| FspBI | CTAG | 3 cut(s) | 42, 360, 407 |
| GluI | GCNGC | 3 cut(s) | 138, 213, 495 |
| HgaI | GACGC | 1 cut(s) | 539 |
| Hin1II | CATG | 3 cut(s) | 62, 448, 472 |
| HinfI | GANTC | 3 cut(s) | 257, 266, 276 |
| Hpy188I | TCNGA | 3 cut(s) | 262, 305, 526 |
| Hpy188III | TCNNGA | 3 cut(s) | 273, 445, 556 |
| HpyAV | CCTTC | 2 cut(s) | 200, 442 |
| HpyCH4IV | ACGT | 3 cut(s) | 11, 109, 240 |
| HpyCH4V | TGCA | 6 cut(s) | 18, 137, 215, 221, 238, 482 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 134, 146, 218, 365, 500 |
| HpyF3I | CTNAG | 4 cut(s) | 93, 150, 498, 525 |
| HpySE526I | ACGT | 3 cut(s) | 11, 109, 240 |
| Hsp92II | CATG | 3 cut(s) | 62, 448, 472 |
| Kzo9I | GATC | 3 cut(s) | 4, 76, 310 |
| LmnI | GCTCC | 1 cut(s) | 209 |
| LpnPI | CCDG | 5 cut(s) | 48, 233, 406, 442, 485 |
| Lsp1109I | GCAGC | 3 cut(s) | 149, 199, 481 |
| MaeI | CTAG | 3 cut(s) | 42, 360, 407 |
| MaeII | ACGT | 3 cut(s) | 11, 109, 240 |
| MaeIII | GTNAC | 3 cut(s) | 37, 416, 510 |
| MalI | GATC | 3 cut(s) | 6, 78, 312 |
| MboI | GATC | 3 cut(s) | 4, 76, 310 |
| MboII | GAAGA | 9 cut(s) | 64, 109, 175, 184, 194, 215, 266, 302, 544 |
| MfeI | CAATTG | 1 cut(s) | 216 |
| MflI | RGATCY | 1 cut(s) | 310 |
| MluCI | AATT | 2 cut(s) | 71, 216 |
| MlyI | GAGTC | 1 cut(s) | 285 |
| MnlI | CCTC | 2 cut(s) | 354, 520 |
| MunI | CAATTG | 1 cut(s) | 216 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 134, 146, 218, 365, 500 |
| NdeII | GATC | 3 cut(s) | 4, 76, 310 |
| NheI | GCTAGC | 1 cut(s) | 359 |
| NlaIII | CATG | 3 cut(s) | 62, 448, 472 |
| NmuCI | GTSAC | 1 cut(s) | 510 |
| PaeR7I | CTCGAG | 1 cut(s) | 273 |
| PagI | TCATGA | 1 cut(s) | 444 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 237 |
| PfeI | GAWTC | 2 cut(s) | 257, 266 |
| PkrI | GCNGC | 3 cut(s) | 139, 214, 496 |
| PleI | GAGTC | 1 cut(s) | 284 |
| PpsI | GAGTC | 1 cut(s) | 284 |
| PstI | CTGCAG | 2 cut(s) | 139, 484 |
| PstNI | CAGNNNCTG | 1 cut(s) | 227 |
| PsuI | RGATCY | 1 cut(s) | 310 |
| SatI | GCNGC | 3 cut(s) | 138, 213, 495 |
| Sau3AI | GATC | 3 cut(s) | 4, 76, 310 |
| SchI | GAGTC | 1 cut(s) | 285 |
| SfcI | CTRYAG | 3 cut(s) | 135, 480, 515 |
| Sfr274I | CTCGAG | 1 cut(s) | 273 |
| SlaI | CTCGAG | 1 cut(s) | 273 |
| SmlI | CTYRAG | 1 cut(s) | 273 |
| SmoI | CTYRAG | 1 cut(s) | 273 |
| Sse9I | AATT | 2 cut(s) | 71, 216 |
| SsiI | CCGC | 1 cut(s) | 368 |
| SspMI | CTAG | 3 cut(s) | 42, 360, 407 |
| TaiI | ACGT | 3 cut(s) | 14, 112, 243 |
| TaqI | TCGA | 2 cut(s) | 274, 555 |
| TasI | AATT | 2 cut(s) | 71, 216 |
| TfiI | GAWTC | 2 cut(s) | 257, 266 |
| TscAI | CASTG | 1 cut(s) | 432 |
| TseFI | GTSAC | 1 cut(s) | 510 |
| TseI | GCWGC | 3 cut(s) | 137, 212, 494 |
| Tsp45I | GTSAC | 1 cut(s) | 510 |
| TspDTI | ATGAA | 6 cut(s) | 84, 216, 258, 339, 433, 461 |
| TspRI | CASTG | 1 cut(s) | 432 |
| XapI | RAATTY | 1 cut(s) | 71 |
| XhoI | CTCGAG | 1 cut(s) | 273 |
| XspI | CTAG | 3 cut(s) | 42, 360, 407 |