Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005288

Physical Location & Seq

Genomic Coordinates Forward (+)

3131892 .. 3132536

Gene Structure 645 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00280620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGATAAAATGGAGTGTAATAAAGTGCAACCTGTTATGAGAAAAGTTAAGAAGAAGCAGGTGAAGGATGAGTTGGATCGTCAGAAACAGGCTGAGAAAAAGAAGAGGCGCTTGGAGAAAGCTCTTGCTACTTCAGCTGCCATCATTTCGGAACTAGAAAAGAAAAAACAGAAGAAGAAGGAAGAGCAACAGAGGCTTGATGAAGAGGGTGCTGCAATTGCCGAGGCTGTTGCCCTGCATGTTCTATTGGACGAAGACTCTGATGAAAGGTGCGAAATTGTTTTGAACAAAGATGAAGTGCTCAAGTCGTGGGATTGCCCTGGTGATTTTGACTTGTTTATGGGTGGAGGAAGGGCTTGCTATCCTTATCAGGATTCTGCAAAGTGTTCACTTGAAGGAATGGGGTGGGGATCTAATGATTACAGATCAGGGTGCAAGTGGGGTGGTTTGGGGAACAATGAATGGTCATTCTCAACTGGGCCTTATGGAAGGGATTACCGCCACCCTTCATTTTGCCAGGAAGCAGGTTGGGGGCCAACTGGATTTGCTGCTGGTCTCATTGCGGCACAGGCTGTTTCATCTCTCCAGATTGCAGAGGATTCACATGAAGGCACAATTGTGCTTGATGGCATGCTAAGACGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

214

Amino Acids

23.92

Weight (kDa)

6.03

Isoelectric Point (pI)

45.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25670 AT4G25670 AT4G25690 AT4G25690 AT5G52550
fragaria_vesca	FvH4_7g30190 FvH4_7g30190
malus_domestica	MD01G1207900.v1.1 MD01G1208000.v1.1 MD07G1278500.v1.1 MD07G1278600.v1.1
prunus_persica	Prupe.2G300400_v2.0.a1 Prupe.2G300500_v2.0.a1 Prupe.7G027400_v2.0.a1
pyrus_communis	pycom01g21870 pycom07g25350
rosa_chinensis	RchiOBHm_Chr1g0378241
rosa_laevigata	RLG00000026457
rosa_multiflora	Rmu_sc0006315.1_g000002 Rmu_sc0038642.1_g000002
rosa_roxburghii	Rroxscaffold_4G00280620
rosa_rugosa	Rorug01G0407300 Rorug01G0407400
rosa_samantha	Rh1AG422400 Rh1BG386700 Rh1CG400300 Rh1DG417900
rosa_wichuraiana	Rw1G037500 Rw1G037510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	49
Acc36I	ACCTGC	2 cut(s)	49, 515
AciI	CCGC	2 cut(s)	499, 563
AclWI	GGATC	2 cut(s)	84, 418
AcuI	CTGAAG	1 cut(s)	117
AgsI	TTSAA	2 cut(s)	286, 395
AjnI	CCWGG	2 cut(s)	319, 516
AjuI	GAANNNNNNNTTGG	4 cut(s)	56, 88, 95, 127
AleI	CACNNNNGTG	1 cut(s)	617
AluBI	AGCT	2 cut(s)	122, 137
AluI	AGCT	2 cut(s)	122, 137
Alw21I	GWGCWC	1 cut(s)	303
Alw26I	GTCTC	1 cut(s)	560
AlwI	GGATC	2 cut(s)	84, 418
AoxI	GGCC	2 cut(s)	479, 533
ApeKI	GCWGC	3 cut(s)	137, 212, 548
AspLEI	GCGC	1 cut(s)	111
AspS9I	GGNCC	2 cut(s)	479, 533
AsuHPI	GGTGA	2 cut(s)	73, 335
BbsI	GAAGAC	1 cut(s)	261
Bbv12I	GWGCWC	1 cut(s)	303
BbvI	GCAGC	3 cut(s)	124, 199, 535
BccI	CCATC	2 cut(s)	149, 620
BcgI	CGANNNNNNTGC	2 cut(s)	212, 246
BciT130I	CCWGG	2 cut(s)	321, 518
BcoDI	GTCTC	1 cut(s)	560
BfaI	CTAG	1 cut(s)	155
BfoI	RGCGCY	1 cut(s)	112
BfuAI	ACCTGC	2 cut(s)	49, 515
BisI	GCNGC	4 cut(s)	138, 213, 549, 564
BlsI	GCNGC	4 cut(s)	139, 214, 550, 565
Bme1390I	CCNGG	2 cut(s)	321, 518
BmgT120I	GGNCC	2 cut(s)	479, 533
BmiI	GGNNCC	1 cut(s)	534
BmrFI	CCNGG	2 cut(s)	321, 518
BmrI	ACTGGG	1 cut(s)	486
BmuI	ACTGGG	1 cut(s)	486
BpiI	GAAGAC	1 cut(s)	261
BpmI	CTGGAG	1 cut(s)	569
BpuEI	CTTGAG	1 cut(s)	287
BsaI	GGTCTC	1 cut(s)	560
BsaJI	CCNNGG	2 cut(s)	222, 319
Bse1I	ACTGG	2 cut(s)	481, 544
Bse3DI	GCAATG	1 cut(s)	558
BseBI	CCWGG	2 cut(s)	321, 518
BseDI	CCNNGG	2 cut(s)	222, 319
BseGI	GGATG	1 cut(s)	73
BseMI	GCAATG	1 cut(s)	558
BseMII	CTCAG	1 cut(s)	84
BseNI	ACTGG	2 cut(s)	481, 544
BseXI	GCAGC	3 cut(s)	124, 199, 535
BshFI	GGCC	2 cut(s)	481, 535
BsiHKAI	GWGCWC	1 cut(s)	303
BsmAI	GTCTC	1 cut(s)	560
BsnI	GGCC	2 cut(s)	481, 535
Bso31I	GGTCTC	1 cut(s)	560
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp143I	GATC	3 cut(s)	76, 410, 425
BspACI	CCGC	2 cut(s)	499, 563
BspANI	GGCC	2 cut(s)	481, 535
BspCNI	CTCAG	1 cut(s)	85
BspLI	GGNNCC	1 cut(s)	534
BspMI	ACCTGC	2 cut(s)	49, 515
BspPI	GGATC	2 cut(s)	84, 418
BspQI	GCTCTTC	1 cut(s)	177
BspTNI	GGTCTC	1 cut(s)	560
BsrDI	GCAATG	1 cut(s)	558
BsrI	ACTGG	2 cut(s)	481, 544
BssECI	CCNNGG	2 cut(s)	222, 319
BssMI	GATC	3 cut(s)	76, 410, 425
Bst2UI	CCWGG	2 cut(s)	321, 518
Bst4CI	ACNGT	1 cut(s)	642
Bst6I	CTCTTC	3 cut(s)	98, 177, 198
BstC8I	GCNNGC	2 cut(s)	358, 632
BstDEI	CTNAG	2 cut(s)	93, 635
BstF5I	GGATG	1 cut(s)	73
BstH2I	RGCGCY	1 cut(s)	112
BstHHI	GCGC	1 cut(s)	111
BstKTI	GATC	3 cut(s)	79, 413, 428
BstMAI	GTCTC	1 cut(s)	560
BstMBI	GATC	3 cut(s)	76, 410, 425
BstMWI	GCNNNNNNNGC	4 cut(s)	134, 193, 218, 569
BstNI	CCWGG	2 cut(s)	321, 518
BstNSI	RCATGY	2 cut(s)	242, 634
BstSCI	CCNGG	2 cut(s)	319, 516
BstV1I	GCAGC	3 cut(s)	124, 199, 535
BstV2I	GAAGAC	1 cut(s)	261
BstX2I	RGATCY	1 cut(s)	410
BstYI	RGATCY	1 cut(s)	410
BsuRI	GGCC	2 cut(s)	481, 535
BtsCI	GGATG	1 cut(s)	73
BveI	ACCTGC	2 cut(s)	49, 515
Cac8I	GCNNGC	2 cut(s)	358, 632
CfoI	GCGC	1 cut(s)	111
Cfr13I	GGNCC	2 cut(s)	479, 533
CspCI	CAANNNNNGTGG	2 cut(s)	424, 459
CviAII	CATG	3 cut(s)	239, 605, 631
CviJI	RGCY	9 cut(s)	92, 122, 137, 196, 227, 356, 481, 535, 572
CviKI_1	RGCY	9 cut(s)	92, 122, 137, 196, 227, 356, 481, 535, 572
DdeI	CTNAG	2 cut(s)	93, 635
DpnI	GATC	3 cut(s)	78, 412, 427
DpnII	GATC	3 cut(s)	76, 410, 425
Eam1104I	CTCTTC	3 cut(s)	98, 177, 198
EarI	CTCTTC	3 cut(s)	98, 177, 198
Eco31I	GGTCTC	1 cut(s)	560
Eco57I	CTGAAG	1 cut(s)	117
EcoRII	CCWGG	2 cut(s)	319, 516
FaeI	CATG	3 cut(s)	242, 608, 634
FaiI	YATR	6 cut(s)	38, 240, 341, 486, 606, 632
FalI	AAGNNNNNCTT	2 cut(s)	95, 127
FatI	CATG	3 cut(s)	238, 604, 630
Fnu4HI	GCNGC	4 cut(s)	138, 213, 549, 564
FokI	GGATG	1 cut(s)	80
Fsp4HI	GCNGC	4 cut(s)	138, 213, 549, 564
FspBI	CTAG	1 cut(s)	155
GlaI	GCGC	1 cut(s)	110
GluI	GCNGC	4 cut(s)	138, 213, 549, 564
GsuI	CTGGAG	1 cut(s)	569
HaeII	RGCGCY	1 cut(s)	112
HaeIII	GGCC	2 cut(s)	481, 535
HhaI	GCGC	1 cut(s)	111
Hin1II	CATG	3 cut(s)	242, 608, 634
Hin6I	GCGC	1 cut(s)	109
HinP1I	GCGC	1 cut(s)	109
HinfI	GANTC	3 cut(s)	257, 374, 599
HphI	GGTGA	2 cut(s)	73, 335
Hpy166II	GTNNAC	1 cut(s)	389
Hpy188I	TCNGA	3 cut(s)	84, 151, 262
Hpy188III	TCNNGA	2 cut(s)	371, 586
Hpy8I	GTNNAC	1 cut(s)	389
HpyAV	CCTTC	7 cut(s)	58, 172, 345, 389, 483, 516, 602
HpyCH4III	ACNGT	1 cut(s)	642
HpyCH4V	TGCA	6 cut(s)	28, 215, 238, 380, 435, 593
HpyF10VI	GCNNNNNNNGC	4 cut(s)	134, 193, 218, 569
HpyF3I	CTNAG	2 cut(s)	93, 635
Hsp92II	CATG	3 cut(s)	242, 608, 634
HspAI	GCGC	1 cut(s)	109
Kzo9I	GATC	3 cut(s)	76, 410, 425
LguI	GCTCTTC	1 cut(s)	177
Lsp1109I	GCAGC	3 cut(s)	124, 199, 535
MaeI	CTAG	1 cut(s)	155
MalI	GATC	3 cut(s)	78, 412, 427
MboI	GATC	3 cut(s)	76, 410, 425
MboII	GAAGA	7 cut(s)	64, 115, 184, 187, 194, 215, 266
MfeI	CAATTG	2 cut(s)	216, 615
MflI	RGATCY	1 cut(s)	410
MhlI	GDGCHC	1 cut(s)	303
MluCI	AATT	3 cut(s)	216, 276, 615
MlyI	GAGTC	1 cut(s)	251
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	6 cut(s)	99, 186, 199, 217, 341, 589
MseI	TTAA	1 cut(s)	48
MslI	CAYNNNNRTG	1 cut(s)	617
MspA1I	CMGCKG	1 cut(s)	137
MspR9I	CCNGG	2 cut(s)	321, 518
MunI	CAATTG	2 cut(s)	216, 615
MvaI	CCWGG	2 cut(s)	321, 518
MwoI	GCNNNNNNNGC	4 cut(s)	134, 193, 218, 569
NdeII	GATC	3 cut(s)	76, 410, 425
NlaIII	CATG	3 cut(s)	242, 608, 634
NlaIV	GGNNCC	1 cut(s)	534
NmeAIII	GCCGAG	1 cut(s)	247
NspI	RCATGY	2 cut(s)	242, 634
OliI	CACNNNNGTG	1 cut(s)	617
PaeI	GCATGC	1 cut(s)	634
PaqCI	CACCTGC	1 cut(s)	49
PciSI	GCTCTTC	1 cut(s)	177
PfeI	GAWTC	2 cut(s)	374, 599
PkrI	GCNGC	4 cut(s)	139, 214, 550, 565
PleI	GAGTC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	251
Psp6I	CCWGG	2 cut(s)	319, 516
PspGI	CCWGG	2 cut(s)	319, 516
PspN4I	GGNNCC	1 cut(s)	534
PspPI	GGNCC	2 cut(s)	479, 533
PsuI	RGATCY	1 cut(s)	410
PvuII	CAGCTG	1 cut(s)	137
RseI	CAYNNNNRTG	1 cut(s)	617
SapI	GCTCTTC	1 cut(s)	177
SaqAI	TTAA	1 cut(s)	48
SatI	GCNGC	4 cut(s)	138, 213, 549, 564
Sau3AI	GATC	3 cut(s)	76, 410, 425
Sau96I	GGNCC	2 cut(s)	479, 533
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	2 cut(s)	321, 518
SduI	GDGCHC	1 cut(s)	303
SetI	ASST	6 cut(s)	34, 63, 124, 139, 272, 529
SmiMI	CAYNNNNRTG	1 cut(s)	617
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
SphI	GCATGC	1 cut(s)	634
Sse9I	AATT	3 cut(s)	216, 276, 615
SsiI	CCGC	2 cut(s)	499, 563
SspMI	CTAG	1 cut(s)	155
StyD4I	CCNGG	2 cut(s)	319, 516
TaaI	ACNGT	1 cut(s)	642
TasI	AATT	3 cut(s)	216, 276, 615
TauI	GCSGC	1 cut(s)	566
TfiI	GAWTC	2 cut(s)	374, 599
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TseI	GCWGC	3 cut(s)	137, 212, 548
TspDTI	ATGAA	7 cut(s)	216, 279, 309, 474, 498, 567, 621
XceI	RCATGY	2 cut(s)	242, 634
XspI	CTAG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.