Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0005288

Physical Location & Seq

Genomic Coordinates Reverse (-)

30277532 .. 30278611

Gene Structure 1080 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1207900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGATAGCATGGATTGTAATAAATTGCAACCGGTTGTGAGAAAAGTTAAGAAAAAGCAGGTGAAGGACGAGTTGGATCGTCAAAAACAGGCTGAGAAAAAGAAGAGGCGTTTGGAGAAAGCCCTTGCTACTTCAGCAGCCATCATTTCTGAACTAGAAAAGAAAAAACAGAAGAAGAAAGAAGAGCAACAGAGGCTTGATGAAGAAGGCGCTGCAATTGCGGAGGCTGTTGCGTTGCGTGTCCTTCTTGGTGAAGAAGACTCGGACGAAACATGTGAGATCGTTCTGAACAAAGATCAAGTGTTCAATCATTGGGATTGTCCTGGCAACATCGACGTATTTATGGGTGGAAGGAGGACATGCTTTCCTTATCAAGACTCTGCAAAGTATTCACTCGAAACGATTGGGTGGGTGTCTGGTGCTTACAGATCGGGATACAACTTGGGCGGCTTAGGGAACAGTGAATGGTCACTCTCATCTGGACCTTATGAAAGAGATTACCCAGAATCATTTTGTGACGATGGAGGTTGGGGTAGCGCCGGATTTGCTGCTGGGCTCATTGCGGCGCAGGCTGTTTCATCTCTACGGATTGCAGAGGATGCACATGAAGGCACAATTGTGCTCGACGGAATGCTAAGGCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

215

Amino Acids

23.78

Weight (kDa)

5.44

Isoelectric Point (pI)

51.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25670 AT4G25670 AT4G25690 AT4G25690 AT5G52550
fragaria_vesca	FvH4_7g30190 FvH4_7g30190
malus_domestica	MD01G1207900.v1.1 MD01G1208000.v1.1 MD07G1278500.v1.1 MD07G1278600.v1.1
prunus_persica	Prupe.2G300400_v2.0.a1 Prupe.2G300500_v2.0.a1 Prupe.7G027400_v2.0.a1
pyrus_communis	pycom01g21870 pycom07g25350
rosa_chinensis	RchiOBHm_Chr1g0378241
rosa_laevigata	RLG00000026457
rosa_multiflora	Rmu_sc0006315.1_g000002 Rmu_sc0038642.1_g000002
rosa_roxburghii	Rroxscaffold_4G00280620
rosa_rugosa	Rorug01G0407300 Rorug01G0407400
rosa_samantha	Rh1AG422400 Rh1BG386700 Rh1CG400300 Rh1DG417900
rosa_wichuraiana	Rw1G037500 Rw1G037510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	49
Acc36I	ACCTGC	1 cut(s)	49
AciI	CCGC	4 cut(s)	221, 447, 563, 640
AclWI	GGATC	1 cut(s)	84
AcuI	CTGAAG	1 cut(s)	117
AflIII	ACRYGT	1 cut(s)	272
AgeI	ACCGGT	1 cut(s)	31
AgsI	TTSAA	1 cut(s)	307
AjnI	CCWGG	1 cut(s)	322
AjuI	GAANNNNNNNTTGG	4 cut(s)	56, 88, 95, 127
AleI	CACNNNNGTG	1 cut(s)	617
Alw21I	GWGCWC	1 cut(s)	624
AlwI	GGATC	1 cut(s)	84
ApeKI	GCWGC	3 cut(s)	137, 212, 548
AsiGI	ACCGGT	1 cut(s)	31
AspLEI	GCGC	3 cut(s)	212, 539, 568
AspS9I	GGNCC	1 cut(s)	482
AsuHPI	GGTGA	2 cut(s)	73, 263
AvaII	GGWCC	1 cut(s)	482
BanII	GRGCYC	1 cut(s)	558
BbsI	GAAGAC	1 cut(s)	264
Bbv12I	GWGCWC	1 cut(s)	624
BbvI	GCAGC	3 cut(s)	149, 199, 535
BccI	CCATC	2 cut(s)	149, 515
BciT130I	CCWGG	1 cut(s)	324
BciVI	GTATCC	1 cut(s)	428
BfaI	CTAG	1 cut(s)	155
BfoI	RGCGCY	2 cut(s)	213, 540
BfuAI	ACCTGC	1 cut(s)	49
BfuI	GTATCC	1 cut(s)	428
BisI	GCNGC	5 cut(s)	138, 213, 448, 549, 564
BlsI	GCNGC	5 cut(s)	139, 214, 449, 550, 565
Bme1390I	CCNGG	1 cut(s)	324
Bme18I	GGWCC	1 cut(s)	482
BmgT120I	GGNCC	1 cut(s)	482
BmrFI	CCNGG	1 cut(s)	324
BmsI	GCATC	1 cut(s)	589
BpiI	GAAGAC	1 cut(s)	264
Bpu10I	CCTNAGC	2 cut(s)	451, 635
BsaWI	WCCGGW	1 cut(s)	31
Bse118I	RCCGGY	1 cut(s)	31
Bse3DI	GCAATG	1 cut(s)	558
BseBI	CCWGG	1 cut(s)	324
BseGI	GGATG	1 cut(s)	604
BseMI	GCAATG	1 cut(s)	558
BseMII	CTCAG	1 cut(s)	84
BseXI	GCAGC	3 cut(s)	149, 199, 535
BseYI	CCCAGC	1 cut(s)	551
BshTI	ACCGGT	1 cut(s)	31
BsiHKAI	GWGCWC	1 cut(s)	624
BsiSI	CCGG	2 cut(s)	32, 540
BsmI	GAATGC	1 cut(s)	636
Bsp1286I	GDGCHC	2 cut(s)	558, 624
Bsp143I	GATC	4 cut(s)	76, 279, 295, 428
BspACI	CCGC	4 cut(s)	221, 447, 563, 640
BspCNI	CTCAG	1 cut(s)	85
BspMI	ACCTGC	1 cut(s)	49
BspPI	GGATC	1 cut(s)	84
BspQI	GCTCTTC	1 cut(s)	177
BsrDI	GCAATG	1 cut(s)	558
BsrFI	RCCGGY	1 cut(s)	31
BssAI	RCCGGY	1 cut(s)	31
BssMI	GATC	4 cut(s)	76, 279, 295, 428
Bst2UI	CCWGG	1 cut(s)	324
Bst4CI	ACNGT	1 cut(s)	461
Bst6I	CTCTTC	2 cut(s)	98, 177
BstAPI	GCANNNNNTGC	1 cut(s)	599
BstC8I	GCNNGC	1 cut(s)	570
BstDEI	CTNAG	3 cut(s)	93, 451, 635
BstF5I	GGATG	1 cut(s)	604
BstH2I	RGCGCY	2 cut(s)	213, 540
BstHHI	GCGC	3 cut(s)	212, 539, 568
BstKTI	GATC	4 cut(s)	79, 282, 298, 431
BstMBI	GATC	4 cut(s)	76, 279, 295, 428
BstMWI	GCNNNNNNNGC	6 cut(s)	134, 193, 218, 545, 569, 599
BstNI	CCWGG	1 cut(s)	324
BstNSI	RCATGY	2 cut(s)	276, 363
BstSCI	CCNGG	1 cut(s)	322
BstV1I	GCAGC	3 cut(s)	149, 199, 535
BstV2I	GAAGAC	1 cut(s)	264
BsuI	GTATCC	1 cut(s)	428
BtsCI	GGATG	1 cut(s)	604
BtsIMutI	CAGTG	1 cut(s)	466
BveI	ACCTGC	1 cut(s)	49
Cac8I	GCNNGC	1 cut(s)	570
CfoI	GCGC	3 cut(s)	212, 539, 568
Cfr10I	RCCGGY	1 cut(s)	31
Cfr13I	GGNCC	1 cut(s)	482
CspAI	ACCGGT	1 cut(s)	31
CviAII	CATG	4 cut(s)	10, 273, 360, 605
CviJI	RGCY	8 cut(s)	92, 122, 140, 196, 227, 450, 556, 572
CviKI_1	RGCY	8 cut(s)	92, 122, 140, 196, 227, 450, 556, 572
DdeI	CTNAG	3 cut(s)	93, 451, 635
DpnI	GATC	4 cut(s)	78, 281, 297, 430
DpnII	GATC	4 cut(s)	76, 279, 295, 428
Eam1104I	CTCTTC	2 cut(s)	98, 177
EarI	CTCTTC	2 cut(s)	98, 177
Eco24I	GRGCYC	1 cut(s)	558
Eco47I	GGWCC	1 cut(s)	482
Eco57I	CTGAAG	1 cut(s)	117
EcoRII	CCWGG	1 cut(s)	322
EcoT38I	GRGCYC	1 cut(s)	558
FaeI	CATG	4 cut(s)	13, 276, 363, 608
FaiI	YATR	6 cut(s)	11, 274, 344, 361, 489, 606
FatI	CATG	4 cut(s)	9, 272, 359, 604
Fnu4HI	GCNGC	5 cut(s)	138, 213, 448, 549, 564
FokI	GGATG	1 cut(s)	611
FriOI	GRGCYC	1 cut(s)	558
Fsp4HI	GCNGC	5 cut(s)	138, 213, 448, 549, 564
FspBI	CTAG	1 cut(s)	155
GlaI	GCGC	3 cut(s)	211, 538, 567
GluI	GCNGC	5 cut(s)	138, 213, 448, 549, 564
GsaI	CCCAGC	1 cut(s)	555
HaeII	RGCGCY	2 cut(s)	213, 540
HapII	CCGG	2 cut(s)	32, 540
HhaI	GCGC	3 cut(s)	212, 539, 568
Hin1II	CATG	4 cut(s)	13, 276, 363, 608
Hin6I	GCGC	3 cut(s)	210, 537, 566
HinP1I	GCGC	3 cut(s)	210, 537, 566
HinfI	GANTC	3 cut(s)	260, 377, 506
HpaII	CCGG	2 cut(s)	32, 540
HphI	GGTGA	2 cut(s)	73, 263
Hpy188I	TCNGA	3 cut(s)	151, 265, 288
Hpy188III	TCNNGA	3 cut(s)	374, 432, 480
Hpy99I	CGWCG	2 cut(s)	338, 629
HpyAV	CCTTC	5 cut(s)	58, 200, 254, 345, 602
HpyCH4III	ACNGT	1 cut(s)	461
HpyCH4IV	ACGT	1 cut(s)	336
HpyCH4V	TGCA	5 cut(s)	28, 215, 383, 593, 602
HpyF10VI	GCNNNNNNNGC	6 cut(s)	134, 193, 218, 545, 569, 599
HpyF3I	CTNAG	3 cut(s)	93, 451, 635
HpySE526I	ACGT	1 cut(s)	336
Hsp92II	CATG	4 cut(s)	13, 276, 363, 608
HspAI	GCGC	3 cut(s)	210, 537, 566
Kzo9I	GATC	4 cut(s)	76, 279, 295, 428
LguI	GCTCTTC	1 cut(s)	177
Lsp1109I	GCAGC	3 cut(s)	149, 199, 535
LweI	GCATC	1 cut(s)	589
MaeI	CTAG	1 cut(s)	155
MaeII	ACGT	1 cut(s)	336
MaeIII	GTNAC	2 cut(s)	468, 515
MalI	GATC	4 cut(s)	78, 281, 297, 430
MboI	GATC	4 cut(s)	76, 279, 295, 428
MboII	GAAGA	7 cut(s)	115, 184, 187, 194, 215, 266, 269
MfeI	CAATTG	2 cut(s)	216, 615
MhlI	GDGCHC	2 cut(s)	558, 624
MluCI	AATT	3 cut(s)	23, 216, 615
MlyI	GAGTC	2 cut(s)	254, 371
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	6 cut(s)	99, 186, 217, 348, 518, 589
MseI	TTAA	1 cut(s)	48
MslI	CAYNNNNRTG	1 cut(s)	617
MspI	CCGG	2 cut(s)	32, 540
MspR9I	CCNGG	1 cut(s)	324
MunI	CAATTG	2 cut(s)	216, 615
Mva1269I	GAATGC	1 cut(s)	636
MvaI	CCWGG	1 cut(s)	324
MwoI	GCNNNNNNNGC	6 cut(s)	134, 193, 218, 545, 569, 599
NdeII	GATC	4 cut(s)	76, 279, 295, 428
NlaIII	CATG	4 cut(s)	13, 276, 363, 608
NmuCI	GTSAC	2 cut(s)	468, 515
NspI	RCATGY	2 cut(s)	276, 363
OliI	CACNNNNGTG	1 cut(s)	617
PaqCI	CACCTGC	1 cut(s)	49
PciI	ACATGT	1 cut(s)	272
PciSI	GCTCTTC	1 cut(s)	177
PctI	GAATGC	1 cut(s)	636
PfeI	GAWTC	1 cut(s)	506
PinAI	ACCGGT	1 cut(s)	31
PkrI	GCNGC	5 cut(s)	139, 214, 449, 550, 565
PleI	GAGTC	2 cut(s)	254, 371
PpsI	GAGTC	2 cut(s)	254, 371
PscI	ACATGT	1 cut(s)	272
Psp6I	CCWGG	1 cut(s)	322
PspFI	CCCAGC	1 cut(s)	551
PspGI	CCWGG	1 cut(s)	322
PspPI	GGNCC	1 cut(s)	482
RseI	CAYNNNNRTG	1 cut(s)	617
SapI	GCTCTTC	1 cut(s)	177
SaqAI	TTAA	1 cut(s)	48
SatI	GCNGC	5 cut(s)	138, 213, 448, 549, 564
Sau3AI	GATC	4 cut(s)	76, 279, 295, 428
Sau96I	GGNCC	1 cut(s)	482
SchI	GAGTC	2 cut(s)	254, 371
ScrFI	CCNGG	1 cut(s)	324
SduI	GDGCHC	2 cut(s)	558, 624
SetI	ASST	4 cut(s)	63, 339, 487, 529
SfaNI	GCATC	1 cut(s)	589
SinI	GGWCC	1 cut(s)	482
SmiMI	CAYNNNNRTG	1 cut(s)	617
Sse9I	AATT	3 cut(s)	23, 216, 615
SsiI	CCGC	4 cut(s)	221, 447, 563, 640
SspMI	CTAG	1 cut(s)	155
StyD4I	CCNGG	1 cut(s)	322
TaaI	ACNGT	1 cut(s)	461
TaiI	ACGT	1 cut(s)	339
TaqI	TCGA	3 cut(s)	333, 396, 624
TasI	AATT	3 cut(s)	23, 216, 615
TauI	GCSGC	2 cut(s)	450, 566
TfiI	GAWTC	1 cut(s)	506
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TscAI	CASTG	1 cut(s)	466
TseFI	GTSAC	2 cut(s)	468, 515
TseI	GCWGC	3 cut(s)	137, 212, 548
Tsp45I	GTSAC	2 cut(s)	468, 515
TspDTI	ATGAA	4 cut(s)	216, 504, 567, 621
TspGWI	ACGGA	2 cut(s)	601, 642
TspRI	CASTG	1 cut(s)	466
VpaK11BI	GGWCC	1 cut(s)	482
XceI	RCATGY	2 cut(s)	276, 363
XspI	CTAG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.