Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0005288

Physical Location & Seq

Genomic Coordinates Reverse (-)

25691619 .. 25692263

Gene Structure 645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g25350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGATAACATGGAGTGTAATAAATTGCAACCTGTTGTGAGAAAAGTTAAGAAAAAGCAGGTGAAGGACGAATTGGATCGTCAAAAGCAGGCTGAGAAAAAGAAGAGGCGCTTGGAGAAAGCCCTTGCTACTTCAGCAGCCATCATTTCTGAACTAGAAAAGAAAAAACAGAAGAAGAAAGAAGAGCAACAGAGGCTTGATGAAGAAGGCGCTGCAATTGCCGAGGCTGTTGCGTTGCATGTCCTACTTGGTGAAGAAGACTCAGATGAAACATGTGAAATTGTTCTGAACAAAGATCAAGTGTTCAATCGTTGGAGTTGTCCTGGCGACGCTGACCTATTTATGGGTGGAAGGAGGGCACGCTTTCCTTATCAAGACTCTGCAAAGTGTTCACTCGAAAGGATTGGGTGGGTGTCCAGTGCTTACAGATCGGGATACAAGTTGGGCGGCATAGGGAACAGTGAATGGTCGCTCTCTTCTGGGCCTTATGGAAGAGAGTACCCTGAATCATTTTGTGAGGATGGAGGTTGGGGTACCACCGGATTTGCAGCTGGGCTCATTGCGGCGCAGGCTGTTTCATCTCTACGGATCGCAGAGGATGCACATGAAGGCACACTAGTGCTCGATGGAATGCTAAGACGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

215

Amino Acids

23.83

Weight (kDa)

6.77

Isoelectric Point (pI)

53.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25670 AT4G25670 AT4G25690 AT4G25690 AT5G52550
fragaria_vesca	FvH4_7g30190 FvH4_7g30190
malus_domestica	MD01G1207900.v1.1 MD01G1208000.v1.1 MD07G1278500.v1.1 MD07G1278600.v1.1
prunus_persica	Prupe.2G300400_v2.0.a1 Prupe.2G300500_v2.0.a1 Prupe.7G027400_v2.0.a1
pyrus_communis	pycom01g21870 pycom07g25350
rosa_chinensis	RchiOBHm_Chr1g0378241
rosa_laevigata	RLG00000026457
rosa_multiflora	Rmu_sc0006315.1_g000002 Rmu_sc0038642.1_g000002
rosa_roxburghii	Rroxscaffold_4G00280620
rosa_rugosa	Rorug01G0407300 Rorug01G0407400
rosa_samantha	Rh1AG422400 Rh1BG386700 Rh1CG400300 Rh1DG417900
rosa_wichuraiana	Rw1G037500 Rw1G037510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	49
Acc36I	ACCTGC	1 cut(s)	49
Acc65I	GGTACC	1 cut(s)	533
AccB1I	GGYRCC	1 cut(s)	533
AciI	CCGC	2 cut(s)	447, 563
AclWI	GGATC	2 cut(s)	84, 596
AcuI	CTGAAG	1 cut(s)	117
AfaI	GTAC	2 cut(s)	500, 535
AfiI	CCNNNNNNNGG	1 cut(s)	343
AflIII	ACRYGT	1 cut(s)	272
AgsI	TTSAA	1 cut(s)	307
AhlI	ACTAGT	1 cut(s)	616
AjnI	CCWGG	1 cut(s)	322
AjuI	GAANNNNNNNTTGG	4 cut(s)	56, 88, 95, 127
AleI	CACNNNNGTG	1 cut(s)	617
AluBI	AGCT	1 cut(s)	551
AluI	AGCT	1 cut(s)	551
Alw21I	GWGCWC	1 cut(s)	624
AlwI	GGATC	2 cut(s)	84, 596
AoxI	GGCC	1 cut(s)	482
ApeKI	GCWGC	3 cut(s)	137, 212, 548
Asp700I	GAANNNNTTC	1 cut(s)	282
Asp718I	GGTACC	1 cut(s)	533
AspLEI	GCGC	3 cut(s)	111, 212, 568
AspS9I	GGNCC	1 cut(s)	482
AsuHPI	GGTGA	2 cut(s)	73, 263
BaeGI	GKGCMC	1 cut(s)	361
BanI	GGYRCC	1 cut(s)	533
BanII	GRGCYC	1 cut(s)	558
BbsI	GAAGAC	1 cut(s)	264
Bbv12I	GWGCWC	1 cut(s)	624
BbvI	GCAGC	3 cut(s)	149, 199, 560
BccI	CCATC	3 cut(s)	149, 515, 620
BcgI	CGANNNNNNTGC	2 cut(s)	212, 246
BciT130I	CCWGG	1 cut(s)	324
BciVI	GTATCC	1 cut(s)	428
BcuI	ACTAGT	1 cut(s)	616
BfaI	CTAG	2 cut(s)	155, 617
BfoI	RGCGCY	2 cut(s)	112, 213
BfuAI	ACCTGC	1 cut(s)	49
BfuI	GTATCC	1 cut(s)	428
BisI	GCNGC	5 cut(s)	138, 213, 448, 549, 564
BlsI	GCNGC	5 cut(s)	139, 214, 449, 550, 565
Bme1390I	CCNGG	1 cut(s)	324
BmgT120I	GGNCC	1 cut(s)	482
BmiI	GGNNCC	1 cut(s)	535
BmrFI	CCNGG	1 cut(s)	324
BmsI	GCATC	1 cut(s)	589
BpiI	GAAGAC	1 cut(s)	264
BsaJI	CCNNGG	1 cut(s)	222
BsaWI	WCCGGW	1 cut(s)	539
Bsc4I	CCNNNNNNNGG	1 cut(s)	343
Bse1I	ACTGG	1 cut(s)	417
Bse3DI	GCAATG	1 cut(s)	558
BseBI	CCWGG	1 cut(s)	324
BseDI	CCNNGG	1 cut(s)	222
BseGI	GGATG	2 cut(s)	526, 604
BseLI	CCNNNNNNNGG	1 cut(s)	343
BseMI	GCAATG	1 cut(s)	558
BseMII	CTCAG	2 cut(s)	84, 276
BseNI	ACTGG	1 cut(s)	417
BseSI	GKGCMC	1 cut(s)	361
BseXI	GCAGC	3 cut(s)	149, 199, 560
BseYI	CCCAGC	1 cut(s)	551
BshFI	GGCC	1 cut(s)	484
BshNI	GGYRCC	1 cut(s)	533
BsiHKAI	GWGCWC	1 cut(s)	624
BsiSI	CCGG	1 cut(s)	540
BslI	CCNNNNNNNGG	1 cut(s)	343
BsmI	GAATGC	1 cut(s)	636
BsnI	GGCC	1 cut(s)	484
Bsp1286I	GDGCHC	3 cut(s)	361, 558, 624
Bsp143I	GATC	4 cut(s)	76, 295, 428, 588
BspACI	CCGC	2 cut(s)	447, 563
BspANI	GGCC	1 cut(s)	484
BspCNI	CTCAG	2 cut(s)	85, 275
BspLI	GGNNCC	1 cut(s)	535
BspMI	ACCTGC	1 cut(s)	49
BspPI	GGATC	2 cut(s)	84, 596
BspQI	GCTCTTC	1 cut(s)	177
BspT107I	GGYRCC	1 cut(s)	533
BsrDI	GCAATG	1 cut(s)	558
BsrI	ACTGG	1 cut(s)	417
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	4 cut(s)	76, 295, 428, 588
Bst2UI	CCWGG	1 cut(s)	324
Bst4CI	ACNGT	2 cut(s)	461, 642
Bst6I	CTCTTC	4 cut(s)	98, 177, 481, 487
BstAPI	GCANNNNNTGC	1 cut(s)	599
BstC8I	GCNNGC	3 cut(s)	90, 361, 570
BstDEI	CTNAG	3 cut(s)	93, 262, 635
BstF5I	GGATG	2 cut(s)	526, 604
BstH2I	RGCGCY	2 cut(s)	112, 213
BstHHI	GCGC	3 cut(s)	111, 212, 568
BstKTI	GATC	4 cut(s)	79, 298, 431, 591
BstMBI	GATC	4 cut(s)	76, 295, 428, 588
BstMWI	GCNNNNNNNGC	5 cut(s)	134, 193, 218, 569, 599
BstNI	CCWGG	1 cut(s)	324
BstNSI	RCATGY	2 cut(s)	242, 276
BstSCI	CCNGG	1 cut(s)	322
BstSLI	GKGCMC	1 cut(s)	361
BstV1I	GCAGC	3 cut(s)	149, 199, 560
BstV2I	GAAGAC	1 cut(s)	264
BsuI	GTATCC	1 cut(s)	428
BsuRI	GGCC	1 cut(s)	484
BtsCI	GGATG	2 cut(s)	526, 604
BtsIMutI	CAGTG	2 cut(s)	424, 466
BveI	ACCTGC	1 cut(s)	49
Cac8I	GCNNGC	3 cut(s)	90, 361, 570
CfoI	GCGC	3 cut(s)	111, 212, 568
Cfr13I	GGNCC	1 cut(s)	482
CseI	GACGC	1 cut(s)	338
Csp6I	GTAC	2 cut(s)	499, 534
CspCI	CAANNNNNGTGG	2 cut(s)	526, 561
CviAII	CATG	4 cut(s)	10, 239, 273, 605
CviJI	RGCY	9 cut(s)	92, 122, 140, 196, 227, 484, 551, 556, 572
CviKI_1	RGCY	9 cut(s)	92, 122, 140, 196, 227, 484, 551, 556, 572
CviQI	GTAC	2 cut(s)	499, 534
DdeI	CTNAG	3 cut(s)	93, 262, 635
DpnI	GATC	4 cut(s)	78, 297, 430, 590
DpnII	GATC	4 cut(s)	76, 295, 428, 588
Eam1104I	CTCTTC	4 cut(s)	98, 177, 481, 487
EarI	CTCTTC	4 cut(s)	98, 177, 481, 487
Eco24I	GRGCYC	1 cut(s)	558
Eco57I	CTGAAG	1 cut(s)	117
EcoRII	CCWGG	1 cut(s)	322
EcoT38I	GRGCYC	1 cut(s)	558
FaeI	CATG	4 cut(s)	13, 242, 276, 608
FaiI	YATR	7 cut(s)	11, 240, 274, 344, 452, 489, 606
FalI	AAGNNNNNCTT	2 cut(s)	95, 127
FatI	CATG	4 cut(s)	9, 238, 272, 604
Fnu4HI	GCNGC	5 cut(s)	138, 213, 448, 549, 564
FokI	GGATG	2 cut(s)	533, 611
FriOI	GRGCYC	1 cut(s)	558
Fsp4HI	GCNGC	5 cut(s)	138, 213, 448, 549, 564
FspBI	CTAG	2 cut(s)	155, 617
GlaI	GCGC	3 cut(s)	110, 211, 567
GluI	GCNGC	5 cut(s)	138, 213, 448, 549, 564
GsaI	CCCAGC	1 cut(s)	555
HaeII	RGCGCY	2 cut(s)	112, 213
HaeIII	GGCC	1 cut(s)	484
HapII	CCGG	1 cut(s)	540
HgaI	GACGC	1 cut(s)	338
HhaI	GCGC	3 cut(s)	111, 212, 568
Hin1II	CATG	4 cut(s)	13, 242, 276, 608
Hin6I	GCGC	3 cut(s)	109, 210, 566
HinP1I	GCGC	3 cut(s)	109, 210, 566
HinfI	GANTC	3 cut(s)	260, 377, 506
HpaII	CCGG	1 cut(s)	540
HphI	GGTGA	2 cut(s)	73, 263
Hpy166II	GTNNAC	1 cut(s)	392
Hpy188I	TCNGA	3 cut(s)	151, 265, 288
Hpy188III	TCNNGA	2 cut(s)	374, 432
Hpy8I	GTNNAC	1 cut(s)	392
Hpy99I	CGWCG	1 cut(s)	332
HpyAV	CCTTC	4 cut(s)	58, 200, 345, 602
HpyCH4III	ACNGT	2 cut(s)	461, 642
HpyCH4V	TGCA	6 cut(s)	28, 215, 238, 383, 548, 602
HpyF10VI	GCNNNNNNNGC	5 cut(s)	134, 193, 218, 569, 599
HpyF3I	CTNAG	3 cut(s)	93, 262, 635
Hsp92II	CATG	4 cut(s)	13, 242, 276, 608
HspAI	GCGC	3 cut(s)	109, 210, 566
KpnI	GGTACC	1 cut(s)	537
Kzo9I	GATC	4 cut(s)	76, 295, 428, 588
LguI	GCTCTTC	1 cut(s)	177
Lsp1109I	GCAGC	3 cut(s)	149, 199, 560
LweI	GCATC	1 cut(s)	589
MaeI	CTAG	2 cut(s)	155, 617
MalI	GATC	4 cut(s)	78, 297, 430, 590
MboI	GATC	4 cut(s)	76, 295, 428, 588
MboII	GAAGA	9 cut(s)	115, 184, 187, 194, 215, 266, 269, 468, 504
MfeI	CAATTG	1 cut(s)	216
MhlI	GDGCHC	3 cut(s)	361, 558, 624
MluCI	AATT	4 cut(s)	23, 71, 216, 279
MlyI	GAGTC	2 cut(s)	254, 371
MmeI	TCCRAC	1 cut(s)	293
MnlI	CCTC	7 cut(s)	99, 186, 217, 348, 511, 518, 589
MroXI	GAANNNNTTC	1 cut(s)	282
MseI	TTAA	1 cut(s)	48
MslI	CAYNNNNRTG	1 cut(s)	617
MspA1I	CMGCKG	1 cut(s)	551
MspI	CCGG	1 cut(s)	540
MspR9I	CCNGG	1 cut(s)	324
MunI	CAATTG	1 cut(s)	216
Mva1269I	GAATGC	1 cut(s)	636
MvaI	CCWGG	1 cut(s)	324
MwoI	GCNNNNNNNGC	5 cut(s)	134, 193, 218, 569, 599
NdeII	GATC	4 cut(s)	76, 295, 428, 588
NlaIII	CATG	4 cut(s)	13, 242, 276, 608
NlaIV	GGNNCC	1 cut(s)	535
NmeAIII	GCCGAG	1 cut(s)	247
NspI	RCATGY	2 cut(s)	242, 276
OliI	CACNNNNGTG	1 cut(s)	617
PaqCI	CACCTGC	1 cut(s)	49
PciI	ACATGT	1 cut(s)	272
PciSI	GCTCTTC	1 cut(s)	177
PctI	GAATGC	1 cut(s)	636
PdmI	GAANNNNTTC	1 cut(s)	282
PfeI	GAWTC	1 cut(s)	506
PkrI	GCNGC	5 cut(s)	139, 214, 449, 550, 565
PleI	GAGTC	2 cut(s)	254, 371
PpsI	GAGTC	2 cut(s)	254, 371
PscI	ACATGT	1 cut(s)	272
Psp6I	CCWGG	1 cut(s)	322
PspFI	CCCAGC	1 cut(s)	551
PspGI	CCWGG	1 cut(s)	322
PspN4I	GGNNCC	1 cut(s)	535
PspPI	GGNCC	1 cut(s)	482
PvuII	CAGCTG	1 cut(s)	551
RsaI	GTAC	2 cut(s)	500, 535
RsaNI	GTAC	2 cut(s)	499, 534
RseI	CAYNNNNRTG	1 cut(s)	617
SapI	GCTCTTC	1 cut(s)	177
SaqAI	TTAA	1 cut(s)	48
SatI	GCNGC	5 cut(s)	138, 213, 448, 549, 564
Sau3AI	GATC	4 cut(s)	76, 295, 428, 588
Sau96I	GGNCC	1 cut(s)	482
SchI	GAGTC	2 cut(s)	254, 371
ScrFI	CCNGG	1 cut(s)	324
SduI	GDGCHC	3 cut(s)	361, 558, 624
SetI	ASST	5 cut(s)	34, 63, 339, 529, 553
SfaNI	GCATC	1 cut(s)	589
SmiMI	CAYNNNNRTG	1 cut(s)	617
SpeI	ACTAGT	1 cut(s)	616
Sse9I	AATT	4 cut(s)	23, 71, 216, 279
SsiI	CCGC	2 cut(s)	447, 563
SspMI	CTAG	2 cut(s)	155, 617
StyD4I	CCNGG	1 cut(s)	322
TaaI	ACNGT	2 cut(s)	461, 642
TaqI	TCGA	2 cut(s)	396, 624
TasI	AATT	4 cut(s)	23, 71, 216, 279
TauI	GCSGC	2 cut(s)	450, 566
TfiI	GAWTC	1 cut(s)	506
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TscAI	CASTG	2 cut(s)	424, 466
TseI	GCWGC	3 cut(s)	137, 212, 548
TspDTI	ATGAA	4 cut(s)	216, 282, 567, 621
TspGWI	ACGGA	1 cut(s)	601
TspRI	CASTG	2 cut(s)	424, 466
XceI	RCATGY	2 cut(s)	242, 276
XmnI	GAANNNNTTC	1 cut(s)	282
XspI	CTAG	2 cut(s)	155, 617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.