Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006092

Physical Location & Seq

Genomic Coordinates Reverse (-)

13817095 .. 13818184

Gene Structure 1090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G27660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGTGAGAAAGCGAAGAGTTGTAGTGGGGATCACACCAGATCCATGTGAGACAAAGAAGAAAACGAAAAGCAAGCGAAGAAAGAGACTTAGTAAGGAGGAGGAAGAAGAAGAAGAGGGAACACCTCTCAGAGGTATATTTTGTCTCAAAACACGACAAGATATGAAGATTTTCGAAGAGAAAGAGGATTGCTTTATCCTCGATTTCGATCCCAACGATTCATTTGATGCACGAAAGCTCTCCGATAGCCCTGCATCTGAATGTGACGACGACGTGGCGATTGTCCATGAGAAAGGCCAGGTGGCTTGTAGGGATTTTCCACATCCAAGGCATCTCTGCTTGAAATTCCCCTTTGAATCAAGTCAACACTCATCACATTGTAATCAGTGTTACTGTTATGTCTGCGATGTGGTTGCGCCTTGTGCATATTGGACGGCTAGTTTTGCTACACCGCACTGTGAGGCATTAGAGAACAGTAAATGGAAGCCTATACGCAAGTTGTACCGGGACCTTCCTGCTGCTGGCCTTCGTGTAACCACCAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

182

Amino Acids

21.05

Weight (kDa)

8.22

Isoelectric Point (pI)

56.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27660 AT5G54148 AT5G54150
fragaria_vesca	FvH4_7g33000 FvH4_7g33000 FvH4_7g33000
malus_domestica	MD01G1229200.v1.1 MD07G1211900.v1.1 MD07G1300600.v1.1 MD07G1300800.v1.1
prunus_persica	Prupe.2G319800_v2.0.a1 Prupe.2G319800_v2.0.a1
pyrus_communis	pycom01g23710 pycom01g23730 pycom07g19510 pycom07g27340
rosa_chinensis	RchiOBHm_Chr1g0382971
rosa_laevigata	RLG00000026143
rosa_multiflora	Rmu_sc0000634.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277730
rosa_rugosa	Rorug01G0437500
rosa_samantha	Rh1AG463000 Rh1BG420000 Rh1CG433800 Rh1DG452000 Rh1DG452700
rosa_wichuraiana	Rw1G040900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	452
AclWI	GGATC	3 cut(s)	35, 38, 203
AcsI	RAATTY	1 cut(s)	344
AfaI	GTAC	1 cut(s)	503
AfiI	CCNNNNNNNGG	2 cut(s)	131, 521
AgsI	TTSAA	2 cut(s)	343, 356
AjiI	CACGTC	1 cut(s)	274
AjnI	CCWGG	1 cut(s)	297
AluBI	AGCT	1 cut(s)	238
AluI	AGCT	1 cut(s)	238
Alw26I	GTCTC	3 cut(s)	44, 79, 149
AlwI	GGATC	3 cut(s)	35, 38, 203
AoxI	GGCC	2 cut(s)	295, 523
ApeKI	GCWGC	1 cut(s)	518
ApoI	RAATTY	1 cut(s)	344
Asp700I	GAANNNNTTC	1 cut(s)	170
AspLEI	GCGC	1 cut(s)	418
AspS9I	GGNCC	1 cut(s)	508
AsuC2I	CCSGG	1 cut(s)	506
AsuHPI	GGTGA	1 cut(s)	16
AsuII	TTCGAA	1 cut(s)	174
AvaII	GGWCC	1 cut(s)	508
BbvI	GCAGC	1 cut(s)	505
BceAI	ACGGC	1 cut(s)	450
BcgI	CGANNNNNNTGC	4 cut(s)	233, 267, 395, 429
BciT130I	CCWGG	1 cut(s)	299
BcnI	CCSGG	1 cut(s)	506
BcoDI	GTCTC	3 cut(s)	44, 79, 149
BfaI	CTAG	1 cut(s)	438
BisI	GCNGC	1 cut(s)	519
BlsI	GCNGC	1 cut(s)	520
Bme1390I	CCNGG	2 cut(s)	299, 506
Bme18I	GGWCC	1 cut(s)	508
BmgBI	CACGTC	1 cut(s)	274
BmgT120I	GGNCC	1 cut(s)	508
BmiI	GGNNCC	1 cut(s)	509
BmrFI	CCNGG	2 cut(s)	299, 506
BmsI	GCATC	3 cut(s)	217, 263, 340
Bpu14I	TTCGAA	1 cut(s)	174
BpuMI	CCSGG	1 cut(s)	506
BsaBI	GATNNNNATC	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	326
Bsc4I	CCNNNNNNNGG	2 cut(s)	131, 521
Bse8I	GATNNNNATC	1 cut(s)	207
BseBI	CCWGG	1 cut(s)	299
BseDI	CCNNGG	1 cut(s)	326
BseGI	GGATG	1 cut(s)	322
BseJI	GATNNNNATC	1 cut(s)	207
BseLI	CCNNNNNNNGG	2 cut(s)	131, 521
BseMII	CTCAG	1 cut(s)	142
BseRI	GAGGAG	1 cut(s)	113
BseXI	GCAGC	1 cut(s)	505
BshFI	GGCC	2 cut(s)	297, 525
BsiSI	CCGG	1 cut(s)	505
BslFI	GGGAC	1 cut(s)	521
BslI	CCNNNNNNNGG	2 cut(s)	131, 521
BsmAI	GTCTC	3 cut(s)	44, 79, 149
BsmFI	GGGAC	1 cut(s)	521
BsnI	GGCC	2 cut(s)	297, 525
Bsp119I	TTCGAA	1 cut(s)	174
Bsp143I	GATC	3 cut(s)	30, 40, 208
BspACI	CCGC	1 cut(s)	452
BspANI	GGCC	2 cut(s)	297, 525
BspCNI	CTCAG	1 cut(s)	141
BspLI	GGNNCC	1 cut(s)	509
BspPI	GGATC	3 cut(s)	35, 38, 203
BspT104I	TTCGAA	1 cut(s)	174
BssECI	CCNNGG	1 cut(s)	326
BssMI	GATC	3 cut(s)	30, 40, 208
BssT1I	CCWWGG	1 cut(s)	326
Bst2UI	CCWGG	1 cut(s)	299
Bst4CI	ACNGT	3 cut(s)	395, 458, 476
Bst6I	CTCTTC	3 cut(s)	10, 108, 171
BstBI	TTCGAA	1 cut(s)	174
BstC8I	GCNNGC	2 cut(s)	74, 523
BstDEI	CTNAG	2 cut(s)	89, 128
BstENI	CCTNNNNNAGG	1 cut(s)	129
BstF5I	GGATG	1 cut(s)	322
BstHHI	GCGC	1 cut(s)	418
BstKTI	GATC	3 cut(s)	33, 43, 211
BstMAI	GTCTC	3 cut(s)	44, 79, 149
BstMBI	GATC	3 cut(s)	30, 40, 208
BstMWI	GCNNNNNNNGC	2 cut(s)	422, 443
BstNI	CCWGG	1 cut(s)	299
BstSCI	CCNGG	2 cut(s)	297, 504
BstV1I	GCAGC	1 cut(s)	505
BstX2I	RGATCY	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	40
BsuRI	GGCC	2 cut(s)	297, 525
BtgZI	GCGATG	1 cut(s)	420
BtrI	CACGTC	1 cut(s)	274
BtsCI	GGATG	1 cut(s)	322
BtsIMutI	CAGTG	2 cut(s)	392, 454
Cac8I	GCNNGC	2 cut(s)	74, 523
CfoI	GCGC	1 cut(s)	418
Cfr13I	GGNCC	1 cut(s)	508
Csp6I	GTAC	1 cut(s)	502
CviAII	CATG	2 cut(s)	45, 287
CviJI	RGCY	7 cut(s)	238, 249, 297, 305, 437, 487, 525
CviKI_1	RGCY	7 cut(s)	238, 249, 297, 305, 437, 487, 525
CviQI	GTAC	1 cut(s)	502
DdeI	CTNAG	2 cut(s)	89, 128
DpnI	GATC	3 cut(s)	32, 42, 210
DpnII	GATC	3 cut(s)	30, 40, 208
Eam1104I	CTCTTC	3 cut(s)	10, 108, 171
EarI	CTCTTC	3 cut(s)	10, 108, 171
Eco130I	CCWWGG	1 cut(s)	326
Eco47I	GGWCC	1 cut(s)	508
EcoNI	CCTNNNNNAGG	1 cut(s)	129
EcoO109I	RGGNCCY	1 cut(s)	508
EcoRII	CCWGG	1 cut(s)	297
EcoT14I	CCWWGG	1 cut(s)	326
ErhI	CCWWGG	1 cut(s)	326
FaeI	CATG	2 cut(s)	48, 290
FaiI	YATR	7 cut(s)	46, 137, 164, 288, 399, 427, 491
FaqI	GGGAC	1 cut(s)	521
FatI	CATG	2 cut(s)	44, 286
Fnu4HI	GCNGC	1 cut(s)	519
FokI	GGATG	1 cut(s)	309
Fsp4HI	GCNGC	1 cut(s)	519
FspBI	CTAG	1 cut(s)	438
GlaI	GCGC	1 cut(s)	417
GluI	GCNGC	1 cut(s)	519
HaeIII	GGCC	2 cut(s)	297, 525
HapII	CCGG	1 cut(s)	505
HhaI	GCGC	1 cut(s)	418
Hin1II	CATG	2 cut(s)	48, 290
Hin6I	GCGC	1 cut(s)	416
HinP1I	GCGC	1 cut(s)	416
HincII	GTYRAC	1 cut(s)	365
HindII	GTYRAC	1 cut(s)	365
HinfI	GANTC	2 cut(s)	218, 356
HpaII	CCGG	1 cut(s)	505
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	365
Hpy188I	TCNGA	3 cut(s)	131, 244, 259
Hpy8I	GTNNAC	1 cut(s)	365
Hpy99I	CGWCG	2 cut(s)	272, 275
HpyAV	CCTTC	2 cut(s)	521, 536
HpyCH4III	ACNGT	3 cut(s)	395, 458, 476
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	3 cut(s)	230, 254, 425
HpyF10VI	GCNNNNNNNGC	2 cut(s)	422, 443
HpyF3I	CTNAG	2 cut(s)	89, 128
HpySE526I	ACGT	1 cut(s)	273
Hsp92II	CATG	2 cut(s)	48, 290
HspAI	GCGC	1 cut(s)	416
Kzo9I	GATC	3 cut(s)	30, 40, 208
LpnPI	CCDG	7 cut(s)	51, 264, 284, 311, 507, 518, 528
Lsp1109I	GCAGC	1 cut(s)	505
LweI	GCATC	3 cut(s)	217, 263, 340
MaeI	CTAG	1 cut(s)	438
MaeII	ACGT	1 cut(s)	273
MaeIII	GTNAC	3 cut(s)	263, 389, 532
MalI	GATC	3 cut(s)	32, 42, 210
MboI	GATC	3 cut(s)	30, 40, 208
MboII	GAAGA	9 cut(s)	27, 70, 90, 116, 119, 122, 125, 178, 188
MflI	RGATCY	1 cut(s)	40
MluCI	AATT	1 cut(s)	344
MnlI	CCTC	8 cut(s)	91, 94, 109, 125, 135, 178, 209, 454
MroXI	GAANNNNTTC	1 cut(s)	170
MslI	CAYNNNNRTG	1 cut(s)	259
MspI	CCGG	1 cut(s)	505
MspR9I	CCNGG	2 cut(s)	299, 506
MvaI	CCWGG	1 cut(s)	299
MwoI	GCNNNNNNNGC	2 cut(s)	422, 443
NciI	CCSGG	1 cut(s)	506
NdeII	GATC	3 cut(s)	30, 40, 208
NlaIII	CATG	2 cut(s)	48, 290
NlaIV	GGNNCC	1 cut(s)	509
NmuCI	GTSAC	1 cut(s)	263
NspV	TTCGAA	1 cut(s)	174
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PdmI	GAANNNNTTC	1 cut(s)	170
PfeI	GAWTC	2 cut(s)	218, 356
PkrI	GCNGC	1 cut(s)	520
PpuMI	RGGWCCY	1 cut(s)	508
Psp5II	RGGWCCY	1 cut(s)	508
Psp6I	CCWGG	1 cut(s)	297
PspGI	CCWGG	1 cut(s)	297
PspN4I	GGNNCC	1 cut(s)	509
PspPI	GGNCC	1 cut(s)	508
PspPPI	RGGWCCY	1 cut(s)	508
PsuI	RGATCY	1 cut(s)	40
RsaI	GTAC	1 cut(s)	503
RsaNI	GTAC	1 cut(s)	502
RseI	CAYNNNNRTG	1 cut(s)	259
SatI	GCNGC	1 cut(s)	519
Sau3AI	GATC	3 cut(s)	30, 40, 208
Sau96I	GGNCC	1 cut(s)	508
ScrFI	CCNGG	2 cut(s)	299, 506
SetI	ASST	6 cut(s)	127, 136, 240, 276, 303, 513
SfaNI	GCATC	3 cut(s)	217, 263, 340
SfuI	TTCGAA	1 cut(s)	174
SinI	GGWCC	1 cut(s)	508
SmiMI	CAYNNNNRTG	1 cut(s)	259
Sse9I	AATT	1 cut(s)	344
SsiI	CCGC	1 cut(s)	452
SspMI	CTAG	1 cut(s)	438
StyD4I	CCNGG	2 cut(s)	297, 504
StyI	CCWWGG	1 cut(s)	326
TaaI	ACNGT	3 cut(s)	395, 458, 476
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	3 cut(s)	174, 201, 207
TasI	AATT	1 cut(s)	344
TfiI	GAWTC	2 cut(s)	218, 356
TscAI	CASTG	2 cut(s)	392, 461
TseFI	GTSAC	1 cut(s)	263
TseI	GCWGC	1 cut(s)	518
Tsp45I	GTSAC	1 cut(s)	263
TspDTI	ATGAA	2 cut(s)	179, 210
TspRI	CASTG	2 cut(s)	392, 461
VpaK11BI	GGWCC	1 cut(s)	508
XagI	CCTNNNNNAGG	1 cut(s)	129
XapI	RAATTY	1 cut(s)	344
XmnI	GAANNNNTTC	1 cut(s)	170
XspI	CTAG	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.