Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0006092

Physical Location & Seq

Genomic Coordinates Forward (+)

65949374 .. 65950436

Gene Structure 1063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG452000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGCCCCCAAAACGCAAAAGCAAACCCCCACAGAGAAGCAGCGAGAGATTGAAGATCAAAATGAGCAACACCAATGACAAGTCTCCGATCGATTTATCCACCCCAACTCCTCCGCCGGAGAAGAAGAACAAGCCGGCCGTCACTAACAAGAAGCCCACTTCGTCCGGCCCAGACGAACAAGACGACGGGTCTCCGATCAGGCACCACCTCATTGTGACCAAGGAGGAATATGTGAAGCGTTTTGAGGAGCTCGATGACTGCTTCATTCTGGGTTTCGACCCAGTTGAGTCGATTGAGATGAAGAAGTTGTCTGTGGCGGATAAGGCTGCTGGGTCGCCGGAGATCGCCGTTGTTGCCGAGAAAGGCCAGGTGGCTTGCAGAGATTATCCACATCCGAGGCATCTCTGCGTTAAATTACCGTTTGAGACAACACCGCATGAGACACATTGTGAGCTGTGTTACTGCTATGTGTGCGATACAGCAGCTCCGTGCAAGTCATGGTCATCTTCTTGTAACAATGCACTGTTATCACATTGTGATGCTTATGACAACAGTGGTGTTTGGAAGCGGGAAAGGACATTGAGGAAACAGTTATCAGCTGTGTTTAAGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

204

Amino Acids

22.94

Weight (kDa)

8.47

Isoelectric Point (pI)

58.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27660 AT5G54148 AT5G54150
fragaria_vesca	FvH4_7g33000 FvH4_7g33000 FvH4_7g33000
malus_domestica	MD01G1229200.v1.1 MD07G1211900.v1.1 MD07G1300600.v1.1 MD07G1300800.v1.1
prunus_persica	Prupe.2G319800_v2.0.a1 Prupe.2G319800_v2.0.a1
pyrus_communis	pycom01g23710 pycom01g23730 pycom07g19510 pycom07g27340
rosa_chinensis	RchiOBHm_Chr1g0382971
rosa_laevigata	RLG00000026143
rosa_multiflora	Rmu_sc0000634.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277730
rosa_rugosa	Rorug01G0437500
rosa_samantha	Rh1AG463000 Rh1BG420000 Rh1CG433800 Rh1DG452000 Rh1DG452700
rosa_wichuraiana	Rw1G040900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	201
AciI	CCGC	4 cut(s)	113, 317, 434, 568
AcoI	YGGCCR	1 cut(s)	135
AdeI	CACNNNGTG	2 cut(s)	449, 536
AgsI	TTSAA	1 cut(s)	52
AhdI	GACNNNNNGTC	1 cut(s)	187
AjnI	CCWGG	1 cut(s)	366
AluBI	AGCT	4 cut(s)	250, 454, 485, 599
AluI	AGCT	4 cut(s)	250, 454, 485, 599
Alw21I	GWGCWC	1 cut(s)	252
Alw26I	GTCTC	4 cut(s)	87, 195, 419, 434
AoxI	GGCC	3 cut(s)	135, 166, 364
ApeKI	GCWGC	3 cut(s)	39, 326, 482
AspS9I	GGNCC	1 cut(s)	167
BanI	GGYRCC	1 cut(s)	201
BanII	GRGCYC	1 cut(s)	252
Bbv12I	GWGCWC	1 cut(s)	252
BbvI	GCAGC	3 cut(s)	51, 313, 494
BceAI	ACGGC	2 cut(s)	122, 332
BciT130I	CCWGG	1 cut(s)	368
BcoDI	GTCTC	4 cut(s)	87, 195, 419, 434
BisI	GCNGC	3 cut(s)	40, 327, 483
BlsI	GCNGC	3 cut(s)	41, 328, 484
Bme1390I	CCNGG	1 cut(s)	368
BmeRI	GACNNNNNGTC	1 cut(s)	187
BmgT120I	GGNCC	1 cut(s)	167
BmiI	GGNNCC	1 cut(s)	203
BmrFI	CCNGG	1 cut(s)	368
BmrI	ACTGGG	1 cut(s)	275
BmsI	GCATC	2 cut(s)	409, 529
BmuI	ACTGGG	1 cut(s)	275
Bsa29I	ATCGAT	1 cut(s)	90
BsaI	GGTCTC	1 cut(s)	195
BsaJI	CCNNGG	2 cut(s)	219, 395
BsaXI	ACNNNNNCTCC	4 cut(s)	91, 121, 469, 499
Bse118I	RCCGGY	1 cut(s)	133
Bse1I	ACTGG	1 cut(s)	281
BseBI	CCWGG	1 cut(s)	368
BseCI	ATCGAT	1 cut(s)	90
BseDI	CCNNGG	2 cut(s)	219, 395
BseGI	GGATG	1 cut(s)	391
BseNI	ACTGG	1 cut(s)	281
BseRI	GAGGAG	2 cut(s)	99, 260
BseX3I	CGGCCG	1 cut(s)	135
BseXI	GCAGC	3 cut(s)	51, 313, 494
BseYI	CCCAGC	1 cut(s)	329
Bsh1285I	CGRYCG	2 cut(s)	90, 138
BshFI	GGCC	3 cut(s)	137, 168, 366
BshNI	GGYRCC	1 cut(s)	201
BshVI	ATCGAT	1 cut(s)	90
BsiEI	CGRYCG	2 cut(s)	90, 138
BsiHKAI	GWGCWC	1 cut(s)	252
BsiSI	CCGG	4 cut(s)	116, 134, 165, 338
BsmAI	GTCTC	4 cut(s)	87, 195, 419, 434
BsnI	GGCC	3 cut(s)	137, 168, 366
Bso31I	GGTCTC	1 cut(s)	195
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp143I	GATC	4 cut(s)	54, 87, 195, 342
BspACI	CCGC	4 cut(s)	113, 317, 434, 568
BspANI	GGCC	3 cut(s)	137, 168, 366
BspDI	ATCGAT	1 cut(s)	90
BspLI	GGNNCC	1 cut(s)	203
BspT107I	GGYRCC	1 cut(s)	201
BspTNI	GGTCTC	1 cut(s)	195
BsrFI	RCCGGY	1 cut(s)	133
BsrI	ACTGG	1 cut(s)	281
BssAI	RCCGGY	1 cut(s)	133
BssECI	CCNNGG	2 cut(s)	219, 395
BssMI	GATC	4 cut(s)	54, 87, 195, 342
BssT1I	CCWWGG	1 cut(s)	219
Bst2UI	CCWGG	1 cut(s)	368
Bst4CI	ACNGT	4 cut(s)	420, 525, 554, 591
BstC8I	GCNNGC	2 cut(s)	135, 376
BstF5I	GGATG	1 cut(s)	391
BstKTI	GATC	4 cut(s)	57, 90, 198, 345
BstMAI	GTCTC	4 cut(s)	87, 195, 419, 434
BstMBI	GATC	4 cut(s)	54, 87, 195, 342
BstMCI	CGRYCG	2 cut(s)	90, 138
BstMWI	GCNNNNNNNGC	3 cut(s)	323, 353, 471
BstNI	CCWGG	1 cut(s)	368
BstSCI	CCNGG	1 cut(s)	366
BstV1I	GCAGC	3 cut(s)	51, 313, 494
BstZI	CGGCCG	1 cut(s)	135
Bsu15I	ATCGAT	1 cut(s)	90
BsuRI	GGCC	3 cut(s)	137, 168, 366
BsuTUI	ATCGAT	1 cut(s)	90
BtsCI	GGATG	1 cut(s)	391
BtsIMutI	CAGTG	2 cut(s)	521, 559
Cac8I	GCNNGC	2 cut(s)	135, 376
Cfr10I	RCCGGY	1 cut(s)	133
Cfr13I	GGNCC	1 cut(s)	167
ClaI	ATCGAT	1 cut(s)	90
CviAII	CATG	2 cut(s)	437, 498
DpnI	GATC	4 cut(s)	56, 89, 197, 344
DpnII	GATC	4 cut(s)	54, 87, 195, 342
DraIII	CACNNNGTG	2 cut(s)	449, 536
DriI	GACNNNNNGTC	1 cut(s)	187
EaeI	YGGCCR	1 cut(s)	135
EagI	CGGCCG	1 cut(s)	135
Eam1105I	GACNNNNNGTC	1 cut(s)	187
EciI	GGCGGA	2 cut(s)	102, 332
Ecl136II	GAGCTC	1 cut(s)	250
EclXI	CGGCCG	1 cut(s)	135
Eco130I	CCWWGG	1 cut(s)	219
Eco24I	GRGCYC	1 cut(s)	252
Eco31I	GGTCTC	1 cut(s)	195
Eco52I	CGGCCG	1 cut(s)	135
Eco53kI	GAGCTC	1 cut(s)	250
EcoICRI	GAGCTC	1 cut(s)	250
EcoRII	CCWGG	1 cut(s)	366
EcoT14I	CCWWGG	1 cut(s)	219
EcoT38I	GRGCYC	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	219
FaeI	CATG	2 cut(s)	440, 501
FaiI	YATR	5 cut(s)	231, 438, 468, 499, 546
FatI	CATG	2 cut(s)	436, 497
FauI	CCCGC	1 cut(s)	561
Fnu4HI	GCNGC	3 cut(s)	40, 327, 483
FokI	GGATG	1 cut(s)	378
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	3 cut(s)	40, 327, 483
GluI	GCNGC	3 cut(s)	40, 327, 483
GsaI	CCCAGC	1 cut(s)	333
HaeIII	GGCC	3 cut(s)	137, 168, 366
HapII	CCGG	4 cut(s)	116, 134, 165, 338
Hin1II	CATG	2 cut(s)	440, 501
HinfI	GANTC	1 cut(s)	287
HpaII	CCGG	4 cut(s)	116, 134, 165, 338
Hpy188I	TCNGA	3 cut(s)	87, 195, 396
Hpy99I	CGWCG	1 cut(s)	188
HpyCH4III	ACNGT	4 cut(s)	420, 525, 554, 591
HpyCH4V	TGCA	3 cut(s)	378, 492, 521
HpyF10VI	GCNNNNNNNGC	3 cut(s)	323, 353, 471
Hsp92II	CATG	2 cut(s)	440, 501
KroI	GCCGGC	1 cut(s)	133
KroNI	GCCGGC	1 cut(s)	135
Kzo9I	GATC	4 cut(s)	54, 87, 195, 342
LmnI	GCTCC	2 cut(s)	247, 490
Lsp1109I	GCAGC	3 cut(s)	51, 313, 494
LweI	GCATC	2 cut(s)	409, 529
MaeIII	GTNAC	4 cut(s)	139, 214, 458, 512
MalI	GATC	4 cut(s)	56, 89, 197, 344
MboI	GATC	4 cut(s)	54, 87, 195, 342
MboII	GAAGA	5 cut(s)	64, 133, 136, 313, 498
MhlI	GDGCHC	1 cut(s)	252
MluCI	AATT	1 cut(s)	413
MlyI	GAGTC	1 cut(s)	296
MnlI	CCTC	6 cut(s)	120, 217, 218, 238, 390, 576
MroNI	GCCGGC	1 cut(s)	133
MseI	TTAA	2 cut(s)	411, 606
MslI	CAYNNNNRTG	1 cut(s)	537
MspA1I	CMGCKG	1 cut(s)	599
MspI	CCGG	4 cut(s)	116, 134, 165, 338
MspR9I	CCNGG	1 cut(s)	368
MvaI	CCWGG	1 cut(s)	368
MwoI	GCNNNNNNNGC	3 cut(s)	323, 353, 471
NaeI	GCCGGC	1 cut(s)	135
NdeII	GATC	4 cut(s)	54, 87, 195, 342
NgoMIV	GCCGGC	1 cut(s)	133
NlaIII	CATG	2 cut(s)	440, 501
NlaIV	GGNNCC	1 cut(s)	203
NmeAIII	GCCGAG	1 cut(s)	382
NmuCI	GTSAC	2 cut(s)	139, 214
PcsI	WCGNNNNNNNCGW	1 cut(s)	180
PdiI	GCCGGC	1 cut(s)	135
PkrI	GCNGC	3 cut(s)	41, 328, 484
Ple19I	CGATCG	1 cut(s)	90
PleI	GAGTC	1 cut(s)	295
PpsI	GAGTC	1 cut(s)	295
Psp124BI	GAGCTC	1 cut(s)	252
Psp6I	CCWGG	1 cut(s)	366
PspFI	CCCAGC	1 cut(s)	329
PspGI	CCWGG	1 cut(s)	366
PspN4I	GGNNCC	1 cut(s)	203
PspPI	GGNCC	1 cut(s)	167
PvuI	CGATCG	1 cut(s)	90
PvuII	CAGCTG	1 cut(s)	599
RseI	CAYNNNNRTG	1 cut(s)	537
SacI	GAGCTC	1 cut(s)	252
SaqAI	TTAA	2 cut(s)	411, 606
SatI	GCNGC	3 cut(s)	40, 327, 483
Sau3AI	GATC	4 cut(s)	54, 87, 195, 342
Sau96I	GGNCC	1 cut(s)	167
SchI	GAGTC	1 cut(s)	296
ScrFI	CCNGG	1 cut(s)	368
SduI	GDGCHC	1 cut(s)	252
SetI	ASST	6 cut(s)	210, 252, 372, 456, 487, 601
SfaNI	GCATC	2 cut(s)	409, 529
SmiMI	CAYNNNNRTG	1 cut(s)	537
Sse9I	AATT	1 cut(s)	413
SsiI	CCGC	4 cut(s)	113, 317, 434, 568
SstI	GAGCTC	1 cut(s)	252
StyD4I	CCNGG	1 cut(s)	366
StyI	CCWWGG	1 cut(s)	219
TaaI	ACNGT	4 cut(s)	420, 525, 554, 591
TaqI	TCGA	4 cut(s)	90, 252, 276, 290
TasI	AATT	1 cut(s)	413
Tru1I	TTAA	2 cut(s)	411, 606
Tru9I	TTAA	2 cut(s)	411, 606
TscAI	CASTG	2 cut(s)	528, 559
TseFI	GTSAC	2 cut(s)	139, 214
TseI	GCWGC	3 cut(s)	39, 326, 482
Tsp45I	GTSAC	2 cut(s)	139, 214
TspDTI	ATGAA	2 cut(s)	253, 314
TspGWI	ACGGA	1 cut(s)	477
TspRI	CASTG	2 cut(s)	528, 559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.