Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0006092

Physical Location & Seq

Genomic Coordinates Forward (+)

35963419 .. 35964752

Gene Structure 1334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1300800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGAGCGAAATCGGAATCGGTGTCAAAGCGATTAATCTATCGTCGACGACGCCGTCGCGCGAGAAGAAGGGAGTGACAGCCGAGAAAACTCCCCAGAAAGCTTTGTCGTCTTCTTCCGCGGAGGACGAGGACGGGAGTCCAATCAGGCACATTGCCTGTGTCAAAAACAAGGTCGATGTCAAACACTTTGAGGGCGTCGAGGACTGCTTCATCTTGGATTTCGACCCCTTTGAGCCGGTGCAGTTTTCCAAGTTGTCCGTGTCGGATAATGGTGGTGGTGGTGGTGGCGGTTCTCCCGATATCGCTGTTGTTGCTGAGAAAGGACAGGTTGCTTGTAGAGACTATCCACATTCAAGACACCTCTGCCTGAAATTTCCTTTCGAGACGACACCCCATGAGAGCTACTGTGAGCTGTGCTACTGCTATGTTTGCGATTCTTCCGCTCCATGCGGGTTGTGGAAACTATCACATTGCCACGCCGCTGCGCACATCAGTGACTGGAAGTGCAAAAGGATGATGAAACGGCAAGCCACGGTGAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

182

Amino Acids

19.75

Weight (kDa)

7.05

Isoelectric Point (pI)

60.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27660 AT5G54148 AT5G54150
fragaria_vesca	FvH4_7g33000 FvH4_7g33000 FvH4_7g33000
malus_domestica	MD01G1229200.v1.1 MD07G1211900.v1.1 MD07G1300600.v1.1 MD07G1300800.v1.1
prunus_persica	Prupe.2G319800_v2.0.a1 Prupe.2G319800_v2.0.a1
pyrus_communis	pycom01g23710 pycom01g23730 pycom07g19510 pycom07g27340
rosa_chinensis	RchiOBHm_Chr1g0382971
rosa_laevigata	RLG00000026143
rosa_multiflora	Rmu_sc0000634.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277730
rosa_rugosa	Rorug01G0437500
rosa_samantha	Rh1AG463000 Rh1BG420000 Rh1CG433800 Rh1DG452000 Rh1DG452700
rosa_wichuraiana	Rw1G040900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	52
Acc16I	TGCGCA	1 cut(s)	486
AccBSI	CCGCTC	1 cut(s)	443
AccI	GTMKAC	1 cut(s)	44
AccII	CGCG	3 cut(s)	58, 60, 119
AciI	CCGC	6 cut(s)	117, 119, 288, 441, 450, 480
AcsI	RAATTY	1 cut(s)	371
AcyI	GRCGYC	2 cut(s)	50, 195
AgsI	TTSAA	1 cut(s)	354
AleI	CACNNNNGTG	1 cut(s)	492
AluBI	AGCT	3 cut(s)	101, 402, 412
AluI	AGCT	3 cut(s)	101, 402, 412
Alw26I	GTCTC	2 cut(s)	333, 377
AlwNI	CAGNNNCTG	1 cut(s)	498
ApeKI	GCWGC	1 cut(s)	482
ApoI	RAATTY	1 cut(s)	371
ArsI	GACNNNNNNTTYG	2 cut(s)	156, 188
AseI	ATTAAT	1 cut(s)	33
AspLEI	GCGC	2 cut(s)	60, 487
BbsI	GAAGAC	1 cut(s)	102
BbvI	GCAGC	1 cut(s)	469
BceAI	ACGGC	2 cut(s)	37, 539
BcoDI	GTCTC	2 cut(s)	333, 377
BisI	GCNGC	2 cut(s)	480, 483
BlsI	GCNGC	2 cut(s)	481, 484
BoxI	GACNNNNGTC	1 cut(s)	135
BpiI	GAAGAC	1 cut(s)	102
BsaHI	GRCGYC	2 cut(s)	50, 195
BsaJI	CCNNGG	2 cut(s)	117, 531
Bse118I	RCCGGY	1 cut(s)	235
Bse1I	ACTGG	1 cut(s)	503
Bse3DI	GCAATG	2 cut(s)	150, 469
BseDI	CCNNGG	2 cut(s)	117, 531
BseGI	GGATG	1 cut(s)	519
BseMI	GCAATG	2 cut(s)	150, 469
BseMII	CTCAG	1 cut(s)	306
BseNI	ACTGG	1 cut(s)	503
BseXI	GCAGC	1 cut(s)	469
BsgI	GTGCAG	1 cut(s)	260
Bsh1236I	CGCG	3 cut(s)	58, 60, 119
BsiSI	CCGG	1 cut(s)	236
BsmAI	GTCTC	2 cut(s)	333, 377
BsmBI	CGTCTC	1 cut(s)	377
BspACI	CCGC	6 cut(s)	117, 119, 288, 441, 450, 480
BspCNI	CTCAG	1 cut(s)	307
BspFNI	CGCG	3 cut(s)	58, 60, 119
BsrBI	CCGCTC	1 cut(s)	443
BsrDI	GCAATG	2 cut(s)	150, 469
BsrFI	RCCGGY	1 cut(s)	235
BsrI	ACTGG	1 cut(s)	503
BssAI	RCCGGY	1 cut(s)	235
BssECI	CCNNGG	2 cut(s)	117, 531
BssNI	GRCGYC	2 cut(s)	50, 195
Bst4CI	ACNGT	2 cut(s)	407, 535
BstACI	GRCGYC	2 cut(s)	50, 195
BstC8I	GCNNGC	1 cut(s)	528
BstDEI	CTNAG	1 cut(s)	315
BstDSI	CCRYGG	2 cut(s)	117, 531
BstF5I	GGATG	1 cut(s)	519
BstFNI	CGCG	3 cut(s)	58, 60, 119
BstHHI	GCGC	2 cut(s)	60, 487
BstMAI	GTCTC	2 cut(s)	333, 377
BstMWI	GCNNNNNNNGC	2 cut(s)	311, 429
BstPAI	GACNNNNGTC	1 cut(s)	135
BstUI	CGCG	3 cut(s)	58, 60, 119
BstV1I	GCAGC	1 cut(s)	469
BstV2I	GAAGAC	1 cut(s)	102
BtgI	CCRYGG	2 cut(s)	117, 531
BtsCI	GGATG	1 cut(s)	519
BtsIMutI	CAGTG	1 cut(s)	499
Cac8I	GCNNGC	1 cut(s)	528
CaiI	CAGNNNCTG	1 cut(s)	498
CfoI	GCGC	2 cut(s)	60, 487
Cfr10I	RCCGGY	1 cut(s)	235
Cfr42I	CCGCGG	1 cut(s)	120
CseI	GACGC	2 cut(s)	58, 184
CviAII	CATG	2 cut(s)	395, 447
CviJI	RGCY	6 cut(s)	80, 101, 235, 402, 412, 530
CviKI_1	RGCY	6 cut(s)	80, 101, 235, 402, 412, 530
DdeI	CTNAG	1 cut(s)	315
DrdI	GACNNNNNNGTC	1 cut(s)	52
DseDI	GACNNNNNNGTC	1 cut(s)	52
Eco32I	GATATC	1 cut(s)	301
EcoRV	GATATC	1 cut(s)	301
Esp3I	CGTCTC	1 cut(s)	377
FaeI	CATG	2 cut(s)	398, 450
FaiI	YATR	3 cut(s)	396, 426, 448
FatI	CATG	2 cut(s)	394, 446
FauI	CCCGC	1 cut(s)	443
FblI	GTMKAC	1 cut(s)	44
Fnu4HI	GCNGC	2 cut(s)	480, 483
FokI	GGATG	1 cut(s)	526
Fsp4HI	GCNGC	2 cut(s)	480, 483
FspI	TGCGCA	1 cut(s)	486
GlaI	GCGC	2 cut(s)	59, 486
GluI	GCNGC	2 cut(s)	480, 483
HapII	CCGG	1 cut(s)	236
HgaI	GACGC	2 cut(s)	58, 184
HhaI	GCGC	2 cut(s)	60, 487
Hin1I	GRCGYC	2 cut(s)	50, 195
Hin1II	CATG	2 cut(s)	398, 450
Hin6I	GCGC	2 cut(s)	58, 485
HinP1I	GCGC	2 cut(s)	58, 485
HincII	GTYRAC	1 cut(s)	45
HindII	GTYRAC	1 cut(s)	45
HindIII	AAGCTT	1 cut(s)	99
HinfI	GANTC	3 cut(s)	15, 136, 434
HpaII	CCGG	1 cut(s)	236
Hpy166II	GTNNAC	1 cut(s)	45
Hpy188I	TCNGA	2 cut(s)	14, 265
Hpy188III	TCNNGA	3 cut(s)	296, 354, 382
Hpy8I	GTNNAC	1 cut(s)	45
Hpy99I	CGWCG	5 cut(s)	46, 49, 52, 58, 200
HpyAV	CCTTC	1 cut(s)	61
HpyCH4III	ACNGT	2 cut(s)	407, 535
HpyCH4V	TGCA	2 cut(s)	241, 507
HpyF10VI	GCNNNNNNNGC	2 cut(s)	311, 429
HpyF3I	CTNAG	1 cut(s)	315
Hsp92I	GRCGYC	2 cut(s)	50, 195
Hsp92II	CATG	2 cut(s)	398, 450
HspAI	GCGC	2 cut(s)	58, 485
KspI	CCGCGG	1 cut(s)	120
LmnI	GCTCC	1 cut(s)	448
LpnPI	CCDG	7 cut(s)	107, 130, 169, 249, 311, 380, 484
Lsp1109I	GCAGC	1 cut(s)	469
MaeIII	GTNAC	2 cut(s)	73, 494
MbiI	CCGCTC	1 cut(s)	443
MboII	GAAGA	4 cut(s)	76, 102, 105, 429
MluCI	AATT	1 cut(s)	371
MlyI	GAGTC	1 cut(s)	145
MmeI	TCCRAC	1 cut(s)	243
MnlI	CCTC	5 cut(s)	115, 121, 184, 193, 371
MseI	TTAA	1 cut(s)	33
MslI	CAYNNNNRTG	1 cut(s)	492
MspA1I	CMGCKG	2 cut(s)	119, 482
MspI	CCGG	1 cut(s)	236
MvnI	CGCG	3 cut(s)	58, 60, 119
MwoI	GCNNNNNNNGC	2 cut(s)	311, 429
NlaIII	CATG	2 cut(s)	398, 450
NmeAIII	GCCGAG	1 cut(s)	106
NmuCI	GTSAC	2 cut(s)	73, 494
NsbI	TGCGCA	1 cut(s)	486
OliI	CACNNNNGTG	1 cut(s)	492
PcsI	WCGNNNNNNNCGW	1 cut(s)	50
PfeI	GAWTC	2 cut(s)	15, 434
PflFI	GACNNNGTC	1 cut(s)	52
PkrI	GCNGC	2 cut(s)	481, 484
PleI	GAGTC	1 cut(s)	144
PpsI	GAGTC	1 cut(s)	144
PshAI	GACNNNNGTC	1 cut(s)	135
PshBI	ATTAAT	1 cut(s)	33
PstNI	CAGNNNCTG	1 cut(s)	498
PsyI	GACNNNGTC	1 cut(s)	52
RseI	CAYNNNNRTG	1 cut(s)	492
SacII	CCGCGG	1 cut(s)	120
SalI	GTCGAC	1 cut(s)	43
SaqAI	TTAA	1 cut(s)	33
SatI	GCNGC	2 cut(s)	480, 483
SchI	GAGTC	1 cut(s)	145
SetI	ASST	6 cut(s)	103, 174, 330, 363, 404, 414
Sfr303I	CCGCGG	1 cut(s)	120
SgrBI	CCGCGG	1 cut(s)	120
SgrDI	CGTCGACG	1 cut(s)	43
SmiMI	CAYNNNNRTG	1 cut(s)	492
Sse9I	AATT	1 cut(s)	371
SsiI	CCGC	6 cut(s)	117, 119, 288, 441, 450, 480
TaaI	ACNGT	2 cut(s)	407, 535
TaqI	TCGA	5 cut(s)	44, 174, 198, 222, 381
TasI	AATT	1 cut(s)	371
TauI	GCSGC	1 cut(s)	482
TfiI	GAWTC	2 cut(s)	15, 434
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TscAI	CASTG	1 cut(s)	499
TseFI	GTSAC	2 cut(s)	73, 494
TseI	GCWGC	1 cut(s)	482
Tsp45I	GTSAC	2 cut(s)	73, 494
TspDTI	ATGAA	2 cut(s)	199, 533
TspGWI	ACGGA	1 cut(s)	247
TspRI	CASTG	1 cut(s)	499
Tth111I	GACNNNGTC	1 cut(s)	52
VspI	ATTAAT	1 cut(s)	33
XapI	RAATTY	1 cut(s)	371
XcmI	CCANNNNNNNNNTGG	1 cut(s)	453
XmiI	GTMKAC	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.