Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0006092

Physical Location & Seq

Genomic Coordinates Forward (+)

20976256 .. 20977538

Gene Structure 1283 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g23730.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGAATCCATACAACCCGTATCAGGCCCAAATAATTTGGAACTTGGGCCTCGACAGTTTGAACAATATAATTCACAATTTTGGCCCGGCCCAAGTTATCGTTTAAAACGTGGCGGTCCTCCTTCCCATTTAACGTTCTCGTTTAAAACGCAGCAAGAGCCAAAAACGCGACTGTTCATCCGAAATTCGGATTCCGAATCTCAGACGAAAAGAGATTCAAAAAAATTCAAAATCCTGGGTAACCGAAAGCGAGCCAGAGAGAAAATGGGTGAAACCGGAATCGACGTCAGAGTGATTAATCAGCCTTCGTCGACGCCGTCGCGCGTGAAGAAGAAGAAGAGAGCGACAACCCAGAAATCTCCCCAGAAGGCTCCGCCGTCTTCTTCCGCGGAGGACGACGACGGGAGTCCAATCAGGCAAATTCTATGTGTCAAAAACAAGGTAGATGTTAAACAGTTCGAGGTCGTGGAGGACTGCTTCATCTTGGATTTCGATCCCTCGGAGCCGGTGCAGTTGTTCAAGTTGTCCGTGTCGGATAATGGTGGTGGTGGTCACGATGGTTCTCCCGATATCGCTGTTGTTGCTGAGAAAGGACAGGTTGCTTGTAGAGACTATCCACATTCAAGGCACCTCTGCCTGAAATTTCCTTTCGGTACAACACCCCATGAGAGCTACTGTGATCTGGTAATGGAGTTTTACAACTTCAAATCTTTGCGTCTTGTGACTTGCTACTGCTACGTTTGTGATTCTGCCGCTCCATGTGGGTTATGGACACTATCACATTGCCATGCCGCCGGGCACATTGGTGATTGGAAGTCTAAAAGGATGTTGAGGAAGCAGCAAGCCGCGGTGAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

287

Amino Acids

32.2

Weight (kDa)

9.34

Isoelectric Point (pI)

55.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27660 AT5G54148 AT5G54150
fragaria_vesca	FvH4_7g33000 FvH4_7g33000 FvH4_7g33000
malus_domestica	MD01G1229200.v1.1 MD07G1211900.v1.1 MD07G1300600.v1.1 MD07G1300800.v1.1
prunus_persica	Prupe.2G319800_v2.0.a1 Prupe.2G319800_v2.0.a1
pyrus_communis	pycom01g23710 pycom01g23730 pycom07g19510 pycom07g27340
rosa_chinensis	RchiOBHm_Chr1g0382971
rosa_laevigata	RLG00000026143
rosa_multiflora	Rmu_sc0000634.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277730
rosa_rugosa	Rorug01G0437500
rosa_samantha	Rh1AG463000 Rh1BG420000 Rh1CG433800 Rh1DG452000 Rh1DG452700
rosa_wichuraiana	Rw1G040900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	288
AccB1I	GGYRCC	1 cut(s)	627
AccBSI	CCGCTC	1 cut(s)	755
AccI	GTMKAC	1 cut(s)	311
AccII	CGCG	5 cut(s)	169, 322, 324, 389, 848
AciI	CCGC	8 cut(s)	114, 374, 387, 389, 753, 792, 846, 848
AclI	AACGTT	1 cut(s)	134
AclWI	GGATC	1 cut(s)	488
AcsI	RAATTY	4 cut(s)	184, 224, 420, 641
AcyI	GRCGYC	2 cut(s)	285, 314
AfaI	GTAC	1 cut(s)	655
AfiI	CCNNNNNNNGG	2 cut(s)	23, 187
AgsI	TTSAA	6 cut(s)	62, 219, 229, 520, 624, 706
AjnI	CCWGG	1 cut(s)	234
AleI	CACNNNNGTG	1 cut(s)	804
AluBI	AGCT	1 cut(s)	672
AluI	AGCT	1 cut(s)	672
Alw26I	GTCTC	1 cut(s)	603
AlwI	GGATC	1 cut(s)	488
AoxI	GGCC	4 cut(s)	25, 47, 83, 88
ApeKI	GCWGC	2 cut(s)	151, 838
ApoI	RAATTY	4 cut(s)	184, 224, 420, 641
AseI	ATTAAT	1 cut(s)	297
AspLEI	GCGC	1 cut(s)	324
AspS9I	GGNCC	5 cut(s)	26, 47, 84, 89, 116
AsuC2I	CCSGG	2 cut(s)	87, 796
AsuHPI	GGTGA	2 cut(s)	281, 818
AvaII	GGWCC	1 cut(s)	116
BaeGI	GKGCMC	1 cut(s)	801
BanI	GGYRCC	1 cut(s)	627
BbsI	GAAGAC	1 cut(s)	372
BbvI	GCAGC	2 cut(s)	163, 850
BccI	CCATC	1 cut(s)	551
BceAI	ACGGC	2 cut(s)	301, 361
BciT130I	CCWGG	1 cut(s)	236
BcnI	CCSGG	2 cut(s)	87, 796
BcoDI	GTCTC	1 cut(s)	603
BisI	GCNGC	5 cut(s)	152, 753, 792, 839, 846
BlsI	GCNGC	5 cut(s)	153, 754, 793, 840, 847
Bme1390I	CCNGG	3 cut(s)	87, 236, 796
Bme18I	GGWCC	1 cut(s)	116
BmgT120I	GGNCC	5 cut(s)	26, 47, 84, 89, 116
BmiI	GGNNCC	3 cut(s)	372, 504, 629
BmrFI	CCNGG	3 cut(s)	87, 236, 796
BoxI	GACNNNNGTC	1 cut(s)	405
BpiI	GAAGAC	1 cut(s)	372
BpuMI	CCSGG	2 cut(s)	87, 796
BsaBI	GATNNNNATC	1 cut(s)	492
BsaHI	GRCGYC	2 cut(s)	285, 314
BsaJI	CCNNGG	4 cut(s)	235, 387, 498, 846
BsaWI	WCCGGW	1 cut(s)	275
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 187
Bse118I	RCCGGY	1 cut(s)	505
Bse3DI	GCAATG	1 cut(s)	781
Bse8I	GATNNNNATC	1 cut(s)	492
BseBI	CCWGG	1 cut(s)	236
BseDI	CCNNGG	4 cut(s)	235, 387, 498, 846
BseGI	GGATG	2 cut(s)	177, 831
BseJI	GATNNNNATC	1 cut(s)	492
BseLI	CCNNNNNNNGG	2 cut(s)	23, 187
BseMI	GCAATG	1 cut(s)	781
BseMII	CTCAG	2 cut(s)	215, 576
BseSI	GKGCMC	1 cut(s)	801
BseXI	GCAGC	2 cut(s)	163, 850
BsgI	GTGCAG	1 cut(s)	530
Bsh1236I	CGCG	5 cut(s)	169, 322, 324, 389, 848
BshFI	GGCC	4 cut(s)	27, 49, 85, 90
BshNI	GGYRCC	1 cut(s)	627
BsiSI	CCGG	4 cut(s)	87, 276, 506, 795
BslI	CCNNNNNNNGG	2 cut(s)	23, 187
BsmAI	GTCTC	1 cut(s)	603
BsnI	GGCC	4 cut(s)	27, 49, 85, 90
Bsp1286I	GDGCHC	1 cut(s)	801
Bsp143I	GATC	2 cut(s)	493, 679
BspACI	CCGC	8 cut(s)	114, 374, 387, 389, 753, 792, 846, 848
BspANI	GGCC	4 cut(s)	27, 49, 85, 90
BspCNI	CTCAG	2 cut(s)	214, 577
BspFNI	CGCG	5 cut(s)	169, 322, 324, 389, 848
BspLI	GGNNCC	3 cut(s)	372, 504, 629
BspPI	GGATC	1 cut(s)	488
BspT107I	GGYRCC	1 cut(s)	627
BsrBI	CCGCTC	1 cut(s)	755
BsrDI	GCAATG	1 cut(s)	781
BsrFI	RCCGGY	1 cut(s)	505
BssAI	RCCGGY	1 cut(s)	505
BssECI	CCNNGG	4 cut(s)	235, 387, 498, 846
BssMI	GATC	2 cut(s)	493, 679
BssNI	GRCGYC	2 cut(s)	285, 314
Bst2UI	CCWGG	1 cut(s)	236
Bst4CI	ACNGT	4 cut(s)	57, 174, 456, 677
Bst6I	CTCTTC	1 cut(s)	332
BstACI	GRCGYC	2 cut(s)	285, 314
BstC8I	GCNNGC	2 cut(s)	252, 843
BstDEI	CTNAG	2 cut(s)	201, 585
BstDSI	CCRYGG	2 cut(s)	387, 846
BstEII	GGTNACC	1 cut(s)	239
BstF5I	GGATG	2 cut(s)	177, 831
BstFNI	CGCG	5 cut(s)	169, 322, 324, 389, 848
BstHHI	GCGC	1 cut(s)	324
BstKTI	GATC	2 cut(s)	496, 682
BstMAI	GTCTC	1 cut(s)	603
BstMBI	GATC	2 cut(s)	493, 679
BstMWI	GCNNNNNNNGC	3 cut(s)	157, 166, 581
BstNI	CCWGG	1 cut(s)	236
BstPAI	GACNNNNGTC	1 cut(s)	405
BstPI	GGTNACC	1 cut(s)	239
BstSCI	CCNGG	3 cut(s)	85, 234, 794
BstSLI	GKGCMC	1 cut(s)	801
BstUI	CGCG	5 cut(s)	169, 322, 324, 389, 848
BstV1I	GCAGC	2 cut(s)	163, 850
BstV2I	GAAGAC	1 cut(s)	372
BsuRI	GGCC	4 cut(s)	27, 49, 85, 90
BtgI	CCRYGG	2 cut(s)	387, 846
BtsCI	GGATG	2 cut(s)	177, 831
Cac8I	GCNNGC	2 cut(s)	252, 843
CfoI	GCGC	1 cut(s)	324
Cfr10I	RCCGGY	1 cut(s)	505
Cfr13I	GGNCC	5 cut(s)	26, 47, 84, 89, 116
Cfr42I	CCGCGG	2 cut(s)	390, 849
CseI	GACGC	2 cut(s)	322, 704
Csp6I	GTAC	1 cut(s)	654
CviAII	CATG	3 cut(s)	665, 759, 788
CviQI	GTAC	1 cut(s)	654
DdeI	CTNAG	2 cut(s)	201, 585
DpnI	GATC	2 cut(s)	495, 681
DpnII	GATC	2 cut(s)	493, 679
DraI	TTTAAA	2 cut(s)	105, 145
Eam1104I	CTCTTC	1 cut(s)	332
EarI	CTCTTC	1 cut(s)	332
EciI	GGCGGA	1 cut(s)	363
Eco32I	GATATC	1 cut(s)	571
Eco47I	GGWCC	1 cut(s)	116
Eco91I	GGTNACC	1 cut(s)	239
EcoO65I	GGTNACC	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	234
EcoRV	GATATC	1 cut(s)	571
FaeI	CATG	3 cut(s)	668, 762, 791
FaiI	YATR	7 cut(s)	11, 69, 427, 666, 760, 769, 789
FatI	CATG	3 cut(s)	664, 758, 787
FblI	GTMKAC	1 cut(s)	311
Fnu4HI	GCNGC	5 cut(s)	152, 753, 792, 839, 846
FokI	GGATG	2 cut(s)	164, 838
Fsp4HI	GCNGC	5 cut(s)	152, 753, 792, 839, 846
GlaI	GCGC	1 cut(s)	323
GluI	GCNGC	5 cut(s)	152, 753, 792, 839, 846
HaeIII	GGCC	4 cut(s)	27, 49, 85, 90
HapII	CCGG	4 cut(s)	87, 276, 506, 795
HgaI	GACGC	2 cut(s)	322, 704
HhaI	GCGC	1 cut(s)	324
Hin1I	GRCGYC	2 cut(s)	285, 314
Hin1II	CATG	3 cut(s)	668, 762, 791
Hin6I	GCGC	1 cut(s)	322
HinP1I	GCGC	1 cut(s)	322
HincII	GTYRAC	1 cut(s)	312
HindII	GTYRAC	1 cut(s)	312
HinfI	GANTC	7 cut(s)	5, 191, 197, 215, 279, 406, 746
HpaII	CCGG	4 cut(s)	87, 276, 506, 795
HphI	GGTGA	2 cut(s)	281, 818
Hpy166II	GTNNAC	1 cut(s)	312
Hpy188I	TCNGA	7 cut(s)	182, 190, 196, 204, 290, 502, 535
Hpy188III	TCNNGA	2 cut(s)	554, 566
Hpy8I	GTNNAC	1 cut(s)	312
Hpy99I	CGWCG	6 cut(s)	287, 313, 316, 322, 401, 404
HpyAV	CCTTC	3 cut(s)	132, 315, 361
HpyCH4III	ACNGT	4 cut(s)	57, 174, 456, 677
HpyCH4IV	ACGT	4 cut(s)	109, 134, 285, 738
HpyCH4V	TGCA	1 cut(s)	511
HpyF10VI	GCNNNNNNNGC	3 cut(s)	157, 166, 581
HpyF3I	CTNAG	2 cut(s)	201, 585
HpySE526I	ACGT	4 cut(s)	109, 134, 285, 738
Hsp92I	GRCGYC	2 cut(s)	285, 314
Hsp92II	CATG	3 cut(s)	668, 762, 791
HspAI	GCGC	1 cut(s)	322
KspI	CCGCGG	2 cut(s)	390, 849
Kzo9I	GATC	2 cut(s)	493, 679
LmnI	GCTCC	3 cut(s)	376, 502, 760
Lsp1109I	GCAGC	2 cut(s)	163, 850
MaeII	ACGT	4 cut(s)	109, 134, 285, 738
MaeIII	GTNAC	3 cut(s)	239, 551, 721
MalI	GATC	2 cut(s)	495, 681
MbiI	CCGCTC	1 cut(s)	755
MboI	GATC	2 cut(s)	493, 679
MboII	GAAGA	6 cut(s)	340, 343, 346, 349, 372, 375
MhlI	GDGCHC	1 cut(s)	801
MluCI	AATT	7 cut(s)	34, 70, 77, 184, 224, 420, 641
MlyI	GAGTC	1 cut(s)	415
MmeI	TCCRAC	1 cut(s)	513
MnlI	CCTC	8 cut(s)	60, 129, 385, 454, 463, 508, 641, 825
MseI	TTAA	5 cut(s)	104, 131, 144, 297, 450
MslI	CAYNNNNRTG	2 cut(s)	786, 804
MspA1I	CMGCKG	2 cut(s)	389, 848
MspI	CCGG	4 cut(s)	87, 276, 506, 795
MspR9I	CCNGG	3 cut(s)	87, 236, 796
MvaI	CCWGG	1 cut(s)	236
MvnI	CGCG	5 cut(s)	169, 322, 324, 389, 848
MwoI	GCNNNNNNNGC	3 cut(s)	157, 166, 581
NciI	CCSGG	2 cut(s)	87, 796
NdeII	GATC	2 cut(s)	493, 679
NlaIII	CATG	3 cut(s)	668, 762, 791
NlaIV	GGNNCC	3 cut(s)	372, 504, 629
NmuCI	GTSAC	2 cut(s)	551, 721
OliI	CACNNNNGTG	1 cut(s)	804
PcsI	WCGNNNNNNNCGW	2 cut(s)	106, 314
PfeI	GAWTC	6 cut(s)	5, 191, 197, 215, 279, 746
PflFI	GACNNNGTC	1 cut(s)	316
PkrI	GCNGC	5 cut(s)	153, 754, 793, 840, 847
PleI	GAGTC	1 cut(s)	414
PpsI	GAGTC	1 cut(s)	414
PshAI	GACNNNNGTC	1 cut(s)	405
PshBI	ATTAAT	1 cut(s)	297
Psp1406I	AACGTT	1 cut(s)	134
Psp6I	CCWGG	1 cut(s)	234
PspEI	GGTNACC	1 cut(s)	239
PspGI	CCWGG	1 cut(s)	234
PspN4I	GGNNCC	3 cut(s)	372, 504, 629
PspPI	GGNCC	5 cut(s)	26, 47, 84, 89, 116
PsyI	GACNNNGTC	1 cut(s)	316
RsaI	GTAC	1 cut(s)	655
RsaNI	GTAC	1 cut(s)	654
RseI	CAYNNNNRTG	2 cut(s)	786, 804
SacII	CCGCGG	2 cut(s)	390, 849
SalI	GTCGAC	1 cut(s)	310
SaqAI	TTAA	5 cut(s)	104, 131, 144, 297, 450
SatI	GCNGC	5 cut(s)	152, 753, 792, 839, 846
Sau3AI	GATC	2 cut(s)	493, 679
Sau96I	GGNCC	5 cut(s)	26, 47, 84, 89, 116
SchI	GAGTC	1 cut(s)	415
ScrFI	CCNGG	3 cut(s)	87, 236, 796
SduI	GDGCHC	1 cut(s)	801
SetI	ASST	9 cut(s)	112, 137, 288, 444, 465, 600, 633, 674, 741
Sfr303I	CCGCGG	2 cut(s)	390, 849
SgrBI	CCGCGG	2 cut(s)	390, 849
SgrDI	CGTCGACG	1 cut(s)	310
SinI	GGWCC	1 cut(s)	116
SmiMI	CAYNNNNRTG	2 cut(s)	786, 804
Sse9I	AATT	7 cut(s)	34, 70, 77, 184, 224, 420, 641
SsiI	CCGC	8 cut(s)	114, 374, 387, 389, 753, 792, 846, 848
StyD4I	CCNGG	3 cut(s)	85, 234, 794
TaaI	ACNGT	4 cut(s)	57, 174, 456, 677
TaiI	ACGT	4 cut(s)	112, 137, 288, 741
TaqI	TCGA	5 cut(s)	52, 282, 311, 459, 492
TasI	AATT	7 cut(s)	34, 70, 77, 184, 224, 420, 641
TauI	GCSGC	3 cut(s)	755, 794, 848
TfiI	GAWTC	6 cut(s)	5, 191, 197, 215, 279, 746
Tru1I	TTAA	5 cut(s)	104, 131, 144, 297, 450
Tru9I	TTAA	5 cut(s)	104, 131, 144, 297, 450
TseFI	GTSAC	2 cut(s)	551, 721
TseI	GCWGC	2 cut(s)	151, 838
Tsp45I	GTSAC	2 cut(s)	551, 721
TspDTI	ATGAA	2 cut(s)	166, 469
TspGWI	ACGGA	1 cut(s)	517
Tth111I	GACNNNGTC	1 cut(s)	316
VpaK11BI	GGWCC	1 cut(s)	116
VspI	ATTAAT	1 cut(s)	297
XapI	RAATTY	4 cut(s)	184, 224, 420, 641
XcmI	CCANNNNNNNNNTGG	2 cut(s)	262, 765
XmiI	GTMKAC	1 cut(s)	311
ZraI	GACGTC	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.