Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0006092

Physical Location & Seq

Genomic Coordinates Forward (+)

35941651 .. 35942965

Gene Structure 1315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1300600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGAGCGAAATCGGAATCGATGTCAAAGAGATTAATCTGTCGTCGACGACGCTGTCACGCGAGAAGAAGGGAGAGACAGCCGAGAAAACTCCCCAGAAAGCTCCGTCGTCTTCTTCTGCGGAGGACGAGGACGGGAGTCCAATCAGGCACATTGTCTGTGTCAAAAACAAGGTCGATGTCAAACACTTTGAGGACGTCGAGGACTGCTTCATCTTGGATTTCGACCCCTTTGAGCCGGTGCAGTTTTCCAAGTTGTCCGTGTCGGATAATGGTGGTGGTGGCGGTTCTCCCGATGTCACTGTTGTTGCTGAGAAAGGACAGGTTGCTTGTAGAGACTATCCACATTCAAGACACCTCTGCCTGAAATTTCCTTTCGAGACGACACCCCATGAGAGCTACTGTGAGCTGTGCTACTGCTATGTTTGCGATTCTTCCGCTCCATGCGGGTTGTGGAAACTATCACATTGCCACGCCGCTGCGCACATCAGTGACTGGAAGTGCAAAAGGATGATGAAACAGCAAGCCACGGTGAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

180

Amino Acids

19.86

Weight (kDa)

5.89

Isoelectric Point (pI)

59.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27660 AT5G54148 AT5G54150
fragaria_vesca	FvH4_7g33000 FvH4_7g33000 FvH4_7g33000
malus_domestica	MD01G1229200.v1.1 MD07G1211900.v1.1 MD07G1300600.v1.1 MD07G1300800.v1.1
prunus_persica	Prupe.2G319800_v2.0.a1 Prupe.2G319800_v2.0.a1
pyrus_communis	pycom01g23710 pycom01g23730 pycom07g19510 pycom07g27340
rosa_chinensis	RchiOBHm_Chr1g0382971
rosa_laevigata	RLG00000026143
rosa_multiflora	Rmu_sc0000634.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277730
rosa_rugosa	Rorug01G0437500
rosa_samantha	Rh1AG463000 Rh1BG420000 Rh1CG433800 Rh1DG452000 Rh1DG452700
rosa_wichuraiana	Rw1G040900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	52
AatII	GACGTC	1 cut(s)	198
Acc16I	TGCGCA	1 cut(s)	480
AccBSI	CCGCTC	1 cut(s)	437
AccI	GTMKAC	1 cut(s)	44
AccII	CGCG	1 cut(s)	60
AciI	CCGC	5 cut(s)	119, 282, 435, 444, 474
AcsI	RAATTY	1 cut(s)	365
AcyI	GRCGYC	1 cut(s)	195
AgsI	TTSAA	1 cut(s)	348
AleI	CACNNNNGTG	1 cut(s)	486
AluBI	AGCT	3 cut(s)	101, 396, 406
AluI	AGCT	3 cut(s)	101, 396, 406
Alw26I	GTCTC	3 cut(s)	68, 327, 371
AlwNI	CAGNNNCTG	1 cut(s)	492
ApeKI	GCWGC	1 cut(s)	476
ApoI	RAATTY	1 cut(s)	365
ArsI	GACNNNNNNTTYG	2 cut(s)	156, 188
AseI	ATTAAT	1 cut(s)	33
AspLEI	GCGC	1 cut(s)	481
BbsI	GAAGAC	1 cut(s)	102
BbvI	GCAGC	1 cut(s)	463
BcoDI	GTCTC	3 cut(s)	68, 327, 371
BisI	GCNGC	2 cut(s)	474, 477
BlsI	GCNGC	2 cut(s)	475, 478
BoxI	GACNNNNGTC	1 cut(s)	135
BpiI	GAAGAC	1 cut(s)	102
Bsa29I	ATCGAT	1 cut(s)	18
BsaHI	GRCGYC	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	525
Bse118I	RCCGGY	1 cut(s)	235
Bse1I	ACTGG	1 cut(s)	497
Bse3DI	GCAATG	1 cut(s)	463
BseCI	ATCGAT	1 cut(s)	18
BseDI	CCNNGG	1 cut(s)	525
BseGI	GGATG	1 cut(s)	513
BseMI	GCAATG	1 cut(s)	463
BseMII	CTCAG	1 cut(s)	300
BseNI	ACTGG	1 cut(s)	497
BseXI	GCAGC	1 cut(s)	463
BsgI	GTGCAG	1 cut(s)	260
Bsh1236I	CGCG	1 cut(s)	60
BshVI	ATCGAT	1 cut(s)	18
BsiSI	CCGG	1 cut(s)	236
BsmAI	GTCTC	3 cut(s)	68, 327, 371
BsmBI	CGTCTC	1 cut(s)	371
BspACI	CCGC	5 cut(s)	119, 282, 435, 444, 474
BspCNI	CTCAG	1 cut(s)	301
BspDI	ATCGAT	1 cut(s)	18
BspFNI	CGCG	1 cut(s)	60
BsrBI	CCGCTC	1 cut(s)	437
BsrDI	GCAATG	1 cut(s)	463
BsrFI	RCCGGY	1 cut(s)	235
BsrI	ACTGG	1 cut(s)	497
BssAI	RCCGGY	1 cut(s)	235
BssECI	CCNNGG	1 cut(s)	525
BssNI	GRCGYC	1 cut(s)	195
Bst4CI	ACNGT	3 cut(s)	301, 401, 529
BstACI	GRCGYC	1 cut(s)	195
BstC8I	GCNNGC	1 cut(s)	522
BstDEI	CTNAG	1 cut(s)	309
BstDSI	CCRYGG	1 cut(s)	525
BstF5I	GGATG	1 cut(s)	513
BstFNI	CGCG	1 cut(s)	60
BstHHI	GCGC	1 cut(s)	481
BstMAI	GTCTC	3 cut(s)	68, 327, 371
BstMWI	GCNNNNNNNGC	1 cut(s)	423
BstPAI	GACNNNNGTC	1 cut(s)	135
BstUI	CGCG	1 cut(s)	60
BstV1I	GCAGC	1 cut(s)	463
BstV2I	GAAGAC	1 cut(s)	102
Bsu15I	ATCGAT	1 cut(s)	18
BsuTUI	ATCGAT	1 cut(s)	18
BtgI	CCRYGG	1 cut(s)	525
BtsCI	GGATG	1 cut(s)	513
BtsIMutI	CAGTG	2 cut(s)	297, 493
Cac8I	GCNNGC	1 cut(s)	522
CaiI	CAGNNNCTG	1 cut(s)	492
CfoI	GCGC	1 cut(s)	481
Cfr10I	RCCGGY	1 cut(s)	235
ClaI	ATCGAT	1 cut(s)	18
CseI	GACGC	1 cut(s)	58
CviAII	CATG	2 cut(s)	389, 441
CviJI	RGCY	6 cut(s)	80, 101, 235, 396, 406, 524
CviKI_1	RGCY	6 cut(s)	80, 101, 235, 396, 406, 524
DdeI	CTNAG	1 cut(s)	309
DrdI	GACNNNNNNGTC	1 cut(s)	52
DseDI	GACNNNNNNGTC	1 cut(s)	52
Esp3I	CGTCTC	1 cut(s)	371
FaeI	CATG	2 cut(s)	392, 444
FaiI	YATR	3 cut(s)	390, 420, 442
FatI	CATG	2 cut(s)	388, 440
FauI	CCCGC	1 cut(s)	437
FblI	GTMKAC	1 cut(s)	44
Fnu4HI	GCNGC	2 cut(s)	474, 477
FokI	GGATG	1 cut(s)	520
Fsp4HI	GCNGC	2 cut(s)	474, 477
FspI	TGCGCA	1 cut(s)	480
GlaI	GCGC	1 cut(s)	480
GluI	GCNGC	2 cut(s)	474, 477
HapII	CCGG	1 cut(s)	236
HgaI	GACGC	1 cut(s)	58
HhaI	GCGC	1 cut(s)	481
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	2 cut(s)	392, 444
Hin6I	GCGC	1 cut(s)	479
HinP1I	GCGC	1 cut(s)	479
HincII	GTYRAC	1 cut(s)	45
HindII	GTYRAC	1 cut(s)	45
HinfI	GANTC	3 cut(s)	15, 136, 428
HpaII	CCGG	1 cut(s)	236
Hpy166II	GTNNAC	1 cut(s)	45
Hpy188I	TCNGA	2 cut(s)	14, 265
Hpy188III	TCNNGA	3 cut(s)	290, 348, 376
Hpy8I	GTNNAC	1 cut(s)	45
Hpy99I	CGWCG	5 cut(s)	46, 49, 52, 109, 200
HpyAV	CCTTC	1 cut(s)	61
HpyCH4III	ACNGT	3 cut(s)	301, 401, 529
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	2 cut(s)	241, 501
HpyF10VI	GCNNNNNNNGC	1 cut(s)	423
HpyF3I	CTNAG	1 cut(s)	309
HpySE526I	ACGT	1 cut(s)	195
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	2 cut(s)	392, 444
HspAI	GCGC	1 cut(s)	479
LmnI	GCTCC	2 cut(s)	106, 442
LpnPI	CCDG	6 cut(s)	107, 130, 249, 305, 374, 478
Lsp1109I	GCAGC	1 cut(s)	463
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	3 cut(s)	54, 295, 488
MbiI	CCGCTC	1 cut(s)	437
MboII	GAAGA	4 cut(s)	76, 102, 105, 423
MluCI	AATT	1 cut(s)	365
MlyI	GAGTC	1 cut(s)	145
MmeI	TCCRAC	1 cut(s)	243
MnlI	CCTC	5 cut(s)	115, 121, 184, 193, 365
MseI	TTAA	1 cut(s)	33
MslI	CAYNNNNRTG	1 cut(s)	486
MspA1I	CMGCKG	1 cut(s)	476
MspI	CCGG	1 cut(s)	236
MvnI	CGCG	1 cut(s)	60
MwoI	GCNNNNNNNGC	1 cut(s)	423
NlaIII	CATG	2 cut(s)	392, 444
NmeAIII	GCCGAG	1 cut(s)	106
NmuCI	GTSAC	3 cut(s)	54, 295, 488
NsbI	TGCGCA	1 cut(s)	480
OliI	CACNNNNGTG	1 cut(s)	486
PfeI	GAWTC	2 cut(s)	15, 428
PflFI	GACNNNGTC	1 cut(s)	52
PkrI	GCNGC	2 cut(s)	475, 478
PleI	GAGTC	1 cut(s)	144
PpsI	GAGTC	1 cut(s)	144
PshAI	GACNNNNGTC	1 cut(s)	135
PshBI	ATTAAT	1 cut(s)	33
PstNI	CAGNNNCTG	1 cut(s)	492
PsyI	GACNNNGTC	1 cut(s)	52
RseI	CAYNNNNRTG	1 cut(s)	486
SalI	GTCGAC	1 cut(s)	43
SaqAI	TTAA	1 cut(s)	33
SatI	GCNGC	2 cut(s)	474, 477
SchI	GAGTC	1 cut(s)	145
SetI	ASST	7 cut(s)	103, 174, 198, 324, 357, 398, 408
SgrDI	CGTCGACG	1 cut(s)	43
SmiMI	CAYNNNNRTG	1 cut(s)	486
Sse9I	AATT	1 cut(s)	365
SsiI	CCGC	5 cut(s)	119, 282, 435, 444, 474
TaaI	ACNGT	3 cut(s)	301, 401, 529
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	6 cut(s)	18, 44, 174, 198, 222, 375
TasI	AATT	1 cut(s)	365
TauI	GCSGC	1 cut(s)	476
TfiI	GAWTC	2 cut(s)	15, 428
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TscAI	CASTG	2 cut(s)	304, 493
TseFI	GTSAC	3 cut(s)	54, 295, 488
TseI	GCWGC	1 cut(s)	476
Tsp45I	GTSAC	3 cut(s)	54, 295, 488
TspDTI	ATGAA	2 cut(s)	199, 527
TspGWI	ACGGA	2 cut(s)	93, 247
TspRI	CASTG	2 cut(s)	304, 493
Tth111I	GACNNNGTC	1 cut(s)	52
VspI	ATTAAT	1 cut(s)	33
XapI	RAATTY	1 cut(s)	365
XcmI	CCANNNNNNNNNTGG	1 cut(s)	447
XmiI	GTMKAC	1 cut(s)	44
ZraI	GACGTC	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.