Rw1G040900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0006092
Physical Location & Seq
Reverse (-)
67970592 .. 67971988
1397 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G040900.1

Sequence Viewer

Length: 615 bp
ATGCCCCCAAAACGCAAAAGCCAACCCCCACAGAGAAGCAGCGAGAGATTGAAGATCAAAATGAGCAACACCAATGACAAGTCTCCGATCGATTTATCCACCCCAACTCCTCCGCCGGAGAAGAAGAACAAGCCGGCCGCCACTAACAAGAAGCCCACTTCGTCCGGCCCAGAAGAACAAGACGACGGGTCTCCGATCAGGCACCACCTCATTGTGACCAAAGAGGAAGATGTGAAGCGTTTTGAGGAGCTCGACGACTGCTTCATTCTGGGTTTCGACCCAGTTGAGTCGATTGAGATGAAGAAGTTGTCTGTGGCGGATAAGGCTGCTGGGTCGCCGGAGATCGCCGTTGTTGCCGAGAAAGGCCAGGTGGCTTGCAGAGACTATCCACATCCGAGGCATCTGTGCGTTAAATTACCGTTTGAGACAACACCGCATGAGACTCATTGTGAGCTGTGTTACTGCTATGTGTGCGATACAGCAGCTCCGTGCAAGTCATGGTCATCTTCTTGTAACAATGCACTGTTATCACATTGTGATGCTTATGACAACAGTGGTGTTTGGAAGCGGGAAAGGACATTGAGGAAACAGGTATCACCTGTGTTTAAGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

204

Amino Acids

22.89

Weight (kDa)

8.0

Isoelectric Point (pI)

68.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 201
AciI CCGC 5 cut(s) 113, 138, 317, 434, 568
AcoI YGGCCR 1 cut(s) 135
AdeI CACNNNGTG 1 cut(s) 536
AgsI TTSAA 1 cut(s) 52
AhdI GACNNNNNGTC 1 cut(s) 187
AjnI CCWGG 1 cut(s) 366
AluBI AGCT 3 cut(s) 250, 454, 485
AluI AGCT 3 cut(s) 250, 454, 485
Alw21I GWGCWC 1 cut(s) 252
Alw26I GTCTC 5 cut(s) 87, 195, 375, 419, 434
AoxI GGCC 3 cut(s) 135, 166, 364
ApeKI GCWGC 3 cut(s) 39, 326, 482
AspS9I GGNCC 1 cut(s) 167
AsuHPI GGTGA 1 cut(s) 588
BanI GGYRCC 1 cut(s) 201
BanII GRGCYC 1 cut(s) 252
Bbv12I GWGCWC 1 cut(s) 252
BbvI GCAGC 3 cut(s) 51, 313, 494
BceAI ACGGC 1 cut(s) 332
BciT130I CCWGG 1 cut(s) 368
BcoDI GTCTC 5 cut(s) 87, 195, 375, 419, 434
BisI GCNGC 4 cut(s) 40, 138, 327, 483
BlsI GCNGC 4 cut(s) 41, 139, 328, 484
Bme1390I CCNGG 1 cut(s) 368
BmeRI GACNNNNNGTC 1 cut(s) 187
BmgT120I GGNCC 1 cut(s) 167
BmiI GGNNCC 1 cut(s) 203
BmrFI CCNGG 1 cut(s) 368
BmrI ACTGGG 1 cut(s) 275
BmsI GCATC 2 cut(s) 409, 529
BmuI ACTGGG 1 cut(s) 275
Bsa29I ATCGAT 1 cut(s) 90
BsaI GGTCTC 1 cut(s) 195
BsaJI CCNNGG 1 cut(s) 395
BsaXI ACNNNNNCTCC 4 cut(s) 91, 121, 469, 499
Bse118I RCCGGY 1 cut(s) 133
Bse1I ACTGG 1 cut(s) 281
BseBI CCWGG 1 cut(s) 368
BseCI ATCGAT 1 cut(s) 90
BseDI CCNNGG 1 cut(s) 395
BseGI GGATG 1 cut(s) 391
BseNI ACTGG 1 cut(s) 281
BseRI GAGGAG 2 cut(s) 99, 260
BseX3I CGGCCG 1 cut(s) 135
BseXI GCAGC 3 cut(s) 51, 313, 494
BseYI CCCAGC 1 cut(s) 329
Bsh1285I CGRYCG 2 cut(s) 90, 138
BshFI GGCC 3 cut(s) 137, 168, 366
BshNI GGYRCC 1 cut(s) 201
BshVI ATCGAT 1 cut(s) 90
BsiEI CGRYCG 2 cut(s) 90, 138
BsiHKAI GWGCWC 1 cut(s) 252
BsiSI CCGG 4 cut(s) 116, 134, 165, 338
BsmAI GTCTC 5 cut(s) 87, 195, 375, 419, 434
BsnI GGCC 3 cut(s) 137, 168, 366
Bso31I GGTCTC 1 cut(s) 195
Bsp1286I GDGCHC 1 cut(s) 252
Bsp143I GATC 4 cut(s) 54, 87, 195, 342
BspACI CCGC 5 cut(s) 113, 138, 317, 434, 568
BspANI GGCC 3 cut(s) 137, 168, 366
BspDI ATCGAT 1 cut(s) 90
BspLI GGNNCC 1 cut(s) 203
BspT107I GGYRCC 1 cut(s) 201
BspTNI GGTCTC 1 cut(s) 195
BsrFI RCCGGY 1 cut(s) 133
BsrI ACTGG 1 cut(s) 281
BssAI RCCGGY 1 cut(s) 133
BssECI CCNNGG 1 cut(s) 395
BssMI GATC 4 cut(s) 54, 87, 195, 342
Bst2UI CCWGG 1 cut(s) 368
Bst4CI ACNGT 3 cut(s) 420, 525, 554
BstC8I GCNNGC 2 cut(s) 135, 376
BstF5I GGATG 1 cut(s) 391
BstKTI GATC 4 cut(s) 57, 90, 198, 345
BstMAI GTCTC 5 cut(s) 87, 195, 375, 419, 434
BstMBI GATC 4 cut(s) 54, 87, 195, 342
BstMCI CGRYCG 2 cut(s) 90, 138
BstMWI GCNNNNNNNGC 3 cut(s) 323, 353, 471
BstNI CCWGG 1 cut(s) 368
BstSCI CCNGG 1 cut(s) 366
BstV1I GCAGC 3 cut(s) 51, 313, 494
BstZI CGGCCG 1 cut(s) 135
Bsu15I ATCGAT 1 cut(s) 90
BsuRI GGCC 3 cut(s) 137, 168, 366
BsuTUI ATCGAT 1 cut(s) 90
BtsCI GGATG 1 cut(s) 391
BtsIMutI CAGTG 2 cut(s) 521, 559
Cac8I GCNNGC 2 cut(s) 135, 376
Cfr10I RCCGGY 1 cut(s) 133
Cfr13I GGNCC 1 cut(s) 167
ClaI ATCGAT 1 cut(s) 90
CviAII CATG 2 cut(s) 437, 498
DpnI GATC 4 cut(s) 56, 89, 197, 344
DpnII GATC 4 cut(s) 54, 87, 195, 342
DraIII CACNNNGTG 1 cut(s) 536
DriI GACNNNNNGTC 1 cut(s) 187
EaeI YGGCCR 1 cut(s) 135
EagI CGGCCG 1 cut(s) 135
Eam1105I GACNNNNNGTC 1 cut(s) 187
EciI GGCGGA 2 cut(s) 102, 332
Ecl136II GAGCTC 1 cut(s) 250
EclXI CGGCCG 1 cut(s) 135
Eco24I GRGCYC 1 cut(s) 252
Eco31I GGTCTC 1 cut(s) 195
Eco52I CGGCCG 1 cut(s) 135
Eco53kI GAGCTC 1 cut(s) 250
EcoICRI GAGCTC 1 cut(s) 250
EcoRII CCWGG 1 cut(s) 366
EcoT38I GRGCYC 1 cut(s) 252
FaeI CATG 2 cut(s) 440, 501
FaiI YATR 4 cut(s) 438, 468, 499, 546
FatI CATG 2 cut(s) 436, 497
FauI CCCGC 1 cut(s) 561
Fnu4HI GCNGC 4 cut(s) 40, 138, 327, 483
FokI GGATG 1 cut(s) 378
FriOI GRGCYC 1 cut(s) 252
Fsp4HI GCNGC 4 cut(s) 40, 138, 327, 483
GluI GCNGC 4 cut(s) 40, 138, 327, 483
GsaI CCCAGC 1 cut(s) 333
HaeIII GGCC 3 cut(s) 137, 168, 366
HapII CCGG 4 cut(s) 116, 134, 165, 338
Hin1II CATG 2 cut(s) 440, 501
HinfI GANTC 2 cut(s) 287, 442
HpaII CCGG 4 cut(s) 116, 134, 165, 338
HphI GGTGA 1 cut(s) 588
Hpy188I TCNGA 3 cut(s) 87, 195, 396
Hpy99I CGWCG 2 cut(s) 188, 257
HpyCH4III ACNGT 3 cut(s) 420, 525, 554
HpyCH4V TGCA 3 cut(s) 378, 492, 521
HpyF10VI GCNNNNNNNGC 3 cut(s) 323, 353, 471
Hsp92II CATG 2 cut(s) 440, 501
KroI GCCGGC 1 cut(s) 133
KroNI GCCGGC 1 cut(s) 135
Kzo9I GATC 4 cut(s) 54, 87, 195, 342
LmnI GCTCC 2 cut(s) 247, 490
Lsp1109I GCAGC 3 cut(s) 51, 313, 494
LweI GCATC 2 cut(s) 409, 529
MaeIII GTNAC 3 cut(s) 214, 458, 512
MalI GATC 4 cut(s) 56, 89, 197, 344
MboI GATC 4 cut(s) 54, 87, 195, 342
MboII GAAGA 7 cut(s) 64, 133, 136, 185, 239, 313, 498
MhlI GDGCHC 1 cut(s) 252
MluCI AATT 1 cut(s) 413
MlyI GAGTC 2 cut(s) 296, 436
MnlI CCTC 6 cut(s) 120, 217, 218, 238, 390, 576
MroNI GCCGGC 1 cut(s) 133
MseI TTAA 2 cut(s) 411, 606
MslI CAYNNNNRTG 1 cut(s) 537
MspI CCGG 4 cut(s) 116, 134, 165, 338
MspR9I CCNGG 1 cut(s) 368
MvaI CCWGG 1 cut(s) 368
MwoI GCNNNNNNNGC 3 cut(s) 323, 353, 471
NaeI GCCGGC 1 cut(s) 135
NdeII GATC 4 cut(s) 54, 87, 195, 342
NgoMIV GCCGGC 1 cut(s) 133
NlaIII CATG 2 cut(s) 440, 501
NlaIV GGNNCC 1 cut(s) 203
NmeAIII GCCGAG 1 cut(s) 382
NmuCI GTSAC 1 cut(s) 214
PdiI GCCGGC 1 cut(s) 135
PkrI GCNGC 4 cut(s) 41, 139, 328, 484
Ple19I CGATCG 1 cut(s) 90
PleI GAGTC 2 cut(s) 295, 436
PpsI GAGTC 2 cut(s) 295, 436
Psp124BI GAGCTC 1 cut(s) 252
Psp6I CCWGG 1 cut(s) 366
PspFI CCCAGC 1 cut(s) 329
PspGI CCWGG 1 cut(s) 366
PspN4I GGNNCC 1 cut(s) 203
PspPI GGNCC 1 cut(s) 167
PvuI CGATCG 1 cut(s) 90
RseI CAYNNNNRTG 1 cut(s) 537
SacI GAGCTC 1 cut(s) 252
SaqAI TTAA 2 cut(s) 411, 606
SatI GCNGC 4 cut(s) 40, 138, 327, 483
Sau3AI GATC 4 cut(s) 54, 87, 195, 342
Sau96I GGNCC 1 cut(s) 167
SchI GAGTC 2 cut(s) 296, 436
ScrFI CCNGG 1 cut(s) 368
SduI GDGCHC 1 cut(s) 252
SetI ASST 7 cut(s) 210, 252, 372, 456, 487, 594, 601
SfaNI GCATC 2 cut(s) 409, 529
SmiMI CAYNNNNRTG 1 cut(s) 537
Sse9I AATT 1 cut(s) 413
SsiI CCGC 5 cut(s) 113, 138, 317, 434, 568
SstI GAGCTC 1 cut(s) 252
StyD4I CCNGG 1 cut(s) 366
TaaI ACNGT 3 cut(s) 420, 525, 554
TaqI TCGA 4 cut(s) 90, 252, 276, 290
TasI AATT 1 cut(s) 413
TauI GCSGC 1 cut(s) 140
Tru1I TTAA 2 cut(s) 411, 606
Tru9I TTAA 2 cut(s) 411, 606
TscAI CASTG 2 cut(s) 528, 559
TseFI GTSAC 1 cut(s) 214
TseI GCWGC 3 cut(s) 39, 326, 482
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 2 cut(s) 253, 314
TspGWI ACGGA 1 cut(s) 477
TspRI CASTG 2 cut(s) 528, 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.