RLG00000026143

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0006092
Physical Location & Seq
Reverse (-)
786833 .. 787892
1060 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026143

Sequence Viewer

Length: 612 bp
ATGCCCCCAAAACGCAAAAGCAAACCCCCACAGAGAAGCAGCGAGAGATTGAAGATCAAAATGAGCAACACCAATGACAAGTCTCCGATCGATTTATCCACCCCAACTCCTCCGCCGGAGAAGAAGAACAAGCCGGCCGTCACTAACAAGAAGCCCACTTCGTCCGGCCCAGAAGAACAAGACGAGTCTCCGATCAGGCACCACCTCATTGTGACCAAAGAGGAAGATGTGAAGCGTTTTGAGGAGCTCGATGACTGCTTCATTCTGGGTTTCGACCCAGTTGAGTCGATTGAGATGAAGAAGTTGTCTGTGGCGGATAAGGCTGCTGGGTCGCCGGAGATCGCCGTTGTTGCCGAGAAAGGCCAGGTGGCTTGCAGAGATTATCCACATCCGAGGCATCTGTGCATTAAATTTCCGTTTGAGACAGCACCGCATGAGACACATTGTGAGCTGTGTTACTGCTATGTGTGCGATACAGCAGCTCCGTGCAAGTCATGGTCATCTTCTTGTAACAATGCACTGTTATCACATTGTGATGCTTATGACAACAGTGGTGTTTGGAAGCGGGAAAGGACATTGAGGAAACAGTTATCAGCTGTGTTTAAGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

204

Amino Acids

22.88

Weight (kDa)

8.28

Isoelectric Point (pI)

65.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 198
AciI CCGC 4 cut(s) 113, 314, 431, 565
AcoI YGGCCR 1 cut(s) 135
AcsI RAATTY 1 cut(s) 410
AdeI CACNNNGTG 2 cut(s) 446, 533
AgsI TTSAA 1 cut(s) 52
AjnI CCWGG 1 cut(s) 363
AluBI AGCT 4 cut(s) 247, 451, 482, 596
AluI AGCT 4 cut(s) 247, 451, 482, 596
Alw21I GWGCWC 1 cut(s) 249
Alw26I GTCTC 4 cut(s) 87, 192, 416, 431
AoxI GGCC 3 cut(s) 135, 166, 361
ApeKI GCWGC 3 cut(s) 39, 323, 479
ApoI RAATTY 1 cut(s) 410
AspS9I GGNCC 1 cut(s) 167
BanI GGYRCC 1 cut(s) 198
BanII GRGCYC 1 cut(s) 249
Bbv12I GWGCWC 1 cut(s) 249
BbvI GCAGC 3 cut(s) 51, 310, 491
BceAI ACGGC 2 cut(s) 122, 329
BciT130I CCWGG 1 cut(s) 365
BcoDI GTCTC 4 cut(s) 87, 192, 416, 431
BisI GCNGC 3 cut(s) 40, 324, 480
BlsI GCNGC 3 cut(s) 41, 325, 481
Bme1390I CCNGG 1 cut(s) 365
BmgT120I GGNCC 1 cut(s) 167
BmiI GGNNCC 1 cut(s) 200
BmrFI CCNGG 1 cut(s) 365
BmrI ACTGGG 1 cut(s) 272
BmsI GCATC 2 cut(s) 406, 526
BmuI ACTGGG 1 cut(s) 272
Bsa29I ATCGAT 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 392
BsaXI ACNNNNNCTCC 4 cut(s) 91, 121, 466, 496
Bse118I RCCGGY 1 cut(s) 133
Bse1I ACTGG 1 cut(s) 278
BseBI CCWGG 1 cut(s) 365
BseCI ATCGAT 1 cut(s) 90
BseDI CCNNGG 1 cut(s) 392
BseGI GGATG 1 cut(s) 388
BseNI ACTGG 1 cut(s) 278
BseRI GAGGAG 2 cut(s) 99, 257
BseX3I CGGCCG 1 cut(s) 135
BseXI GCAGC 3 cut(s) 51, 310, 491
BseYI CCCAGC 1 cut(s) 326
Bsh1285I CGRYCG 2 cut(s) 90, 138
BshFI GGCC 3 cut(s) 137, 168, 363
BshNI GGYRCC 1 cut(s) 198
BshVI ATCGAT 1 cut(s) 90
BsiEI CGRYCG 2 cut(s) 90, 138
BsiHKAI GWGCWC 1 cut(s) 249
BsiSI CCGG 4 cut(s) 116, 134, 165, 335
BsmAI GTCTC 4 cut(s) 87, 192, 416, 431
BsnI GGCC 3 cut(s) 137, 168, 363
Bsp1286I GDGCHC 1 cut(s) 249
Bsp143I GATC 4 cut(s) 54, 87, 192, 339
BspACI CCGC 4 cut(s) 113, 314, 431, 565
BspANI GGCC 3 cut(s) 137, 168, 363
BspDI ATCGAT 1 cut(s) 90
BspLI GGNNCC 1 cut(s) 200
BspT107I GGYRCC 1 cut(s) 198
BsrFI RCCGGY 1 cut(s) 133
BsrI ACTGG 1 cut(s) 278
BssAI RCCGGY 1 cut(s) 133
BssECI CCNNGG 1 cut(s) 392
BssMI GATC 4 cut(s) 54, 87, 192, 339
Bst2UI CCWGG 1 cut(s) 365
Bst4CI ACNGT 3 cut(s) 522, 551, 588
BstC8I GCNNGC 2 cut(s) 135, 373
BstF5I GGATG 1 cut(s) 388
BstKTI GATC 4 cut(s) 57, 90, 195, 342
BstMAI GTCTC 4 cut(s) 87, 192, 416, 431
BstMBI GATC 4 cut(s) 54, 87, 192, 339
BstMCI CGRYCG 2 cut(s) 90, 138
BstMWI GCNNNNNNNGC 3 cut(s) 320, 350, 468
BstNI CCWGG 1 cut(s) 365
BstSCI CCNGG 1 cut(s) 363
BstV1I GCAGC 3 cut(s) 51, 310, 491
BstZI CGGCCG 1 cut(s) 135
Bsu15I ATCGAT 1 cut(s) 90
BsuRI GGCC 3 cut(s) 137, 168, 363
BsuTUI ATCGAT 1 cut(s) 90
BtsCI GGATG 1 cut(s) 388
BtsIMutI CAGTG 2 cut(s) 518, 556
Cac8I GCNNGC 2 cut(s) 135, 373
Cfr10I RCCGGY 1 cut(s) 133
Cfr13I GGNCC 1 cut(s) 167
ClaI ATCGAT 1 cut(s) 90
CviAII CATG 2 cut(s) 434, 495
DpnI GATC 4 cut(s) 56, 89, 194, 341
DpnII GATC 4 cut(s) 54, 87, 192, 339
DraIII CACNNNGTG 2 cut(s) 446, 533
EaeI YGGCCR 1 cut(s) 135
EagI CGGCCG 1 cut(s) 135
EciI GGCGGA 2 cut(s) 102, 329
Ecl136II GAGCTC 1 cut(s) 247
EclXI CGGCCG 1 cut(s) 135
Eco24I GRGCYC 1 cut(s) 249
Eco52I CGGCCG 1 cut(s) 135
Eco53kI GAGCTC 1 cut(s) 247
EcoICRI GAGCTC 1 cut(s) 247
EcoRII CCWGG 1 cut(s) 363
EcoT38I GRGCYC 1 cut(s) 249
FaeI CATG 2 cut(s) 437, 498
FaiI YATR 4 cut(s) 435, 465, 496, 543
FatI CATG 2 cut(s) 433, 494
FauI CCCGC 1 cut(s) 558
Fnu4HI GCNGC 3 cut(s) 40, 324, 480
FokI GGATG 1 cut(s) 375
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 3 cut(s) 40, 324, 480
GluI GCNGC 3 cut(s) 40, 324, 480
GsaI CCCAGC 1 cut(s) 330
HaeIII GGCC 3 cut(s) 137, 168, 363
HapII CCGG 4 cut(s) 116, 134, 165, 335
Hin1II CATG 2 cut(s) 437, 498
HinfI GANTC 2 cut(s) 185, 284
HpaII CCGG 4 cut(s) 116, 134, 165, 335
Hpy188I TCNGA 3 cut(s) 87, 192, 393
HpyCH4III ACNGT 3 cut(s) 522, 551, 588
HpyCH4V TGCA 4 cut(s) 375, 405, 489, 518
HpyF10VI GCNNNNNNNGC 3 cut(s) 320, 350, 468
Hsp92II CATG 2 cut(s) 437, 498
KroI GCCGGC 1 cut(s) 133
KroNI GCCGGC 1 cut(s) 135
Kzo9I GATC 4 cut(s) 54, 87, 192, 339
LmnI GCTCC 2 cut(s) 244, 487
Lsp1109I GCAGC 3 cut(s) 51, 310, 491
LweI GCATC 2 cut(s) 406, 526
MaeIII GTNAC 4 cut(s) 139, 211, 455, 509
MalI GATC 4 cut(s) 56, 89, 194, 341
MboI GATC 4 cut(s) 54, 87, 192, 339
MboII GAAGA 7 cut(s) 64, 133, 136, 185, 236, 310, 495
MhlI GDGCHC 1 cut(s) 249
MluCI AATT 1 cut(s) 410
MlyI GAGTC 2 cut(s) 194, 293
MnlI CCTC 6 cut(s) 120, 214, 215, 235, 387, 573
MroNI GCCGGC 1 cut(s) 133
MseI TTAA 2 cut(s) 408, 603
MslI CAYNNNNRTG 1 cut(s) 534
MspA1I CMGCKG 1 cut(s) 596
MspI CCGG 4 cut(s) 116, 134, 165, 335
MspR9I CCNGG 1 cut(s) 365
MvaI CCWGG 1 cut(s) 365
MwoI GCNNNNNNNGC 3 cut(s) 320, 350, 468
NaeI GCCGGC 1 cut(s) 135
NdeII GATC 4 cut(s) 54, 87, 192, 339
NgoMIV GCCGGC 1 cut(s) 133
NlaIII CATG 2 cut(s) 437, 498
NlaIV GGNNCC 1 cut(s) 200
NmeAIII GCCGAG 1 cut(s) 379
NmuCI GTSAC 2 cut(s) 139, 211
PdiI GCCGGC 1 cut(s) 135
PkrI GCNGC 3 cut(s) 41, 325, 481
Ple19I CGATCG 1 cut(s) 90
PleI GAGTC 2 cut(s) 193, 292
PpsI GAGTC 2 cut(s) 193, 292
Psp124BI GAGCTC 1 cut(s) 249
Psp6I CCWGG 1 cut(s) 363
PspFI CCCAGC 1 cut(s) 326
PspGI CCWGG 1 cut(s) 363
PspN4I GGNNCC 1 cut(s) 200
PspPI GGNCC 1 cut(s) 167
PvuI CGATCG 1 cut(s) 90
PvuII CAGCTG 1 cut(s) 596
RseI CAYNNNNRTG 1 cut(s) 534
SacI GAGCTC 1 cut(s) 249
SaqAI TTAA 2 cut(s) 408, 603
SatI GCNGC 3 cut(s) 40, 324, 480
Sau3AI GATC 4 cut(s) 54, 87, 192, 339
Sau96I GGNCC 1 cut(s) 167
SchI GAGTC 2 cut(s) 194, 293
ScrFI CCNGG 1 cut(s) 365
SduI GDGCHC 1 cut(s) 249
SetI ASST 6 cut(s) 207, 249, 369, 453, 484, 598
SfaNI GCATC 2 cut(s) 406, 526
SmiMI CAYNNNNRTG 1 cut(s) 534
Sse9I AATT 1 cut(s) 410
SsiI CCGC 4 cut(s) 113, 314, 431, 565
SstI GAGCTC 1 cut(s) 249
StyD4I CCNGG 1 cut(s) 363
TaaI ACNGT 3 cut(s) 522, 551, 588
TaqI TCGA 4 cut(s) 90, 249, 273, 287
TasI AATT 1 cut(s) 410
Tru1I TTAA 2 cut(s) 408, 603
Tru9I TTAA 2 cut(s) 408, 603
TscAI CASTG 2 cut(s) 525, 556
TseFI GTSAC 2 cut(s) 139, 211
TseI GCWGC 3 cut(s) 39, 323, 479
Tsp45I GTSAC 2 cut(s) 139, 211
TspDTI ATGAA 2 cut(s) 250, 311
TspGWI ACGGA 2 cut(s) 405, 474
TspRI CASTG 2 cut(s) 525, 556
XapI RAATTY 1 cut(s) 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.