Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0006092

Physical Location & Seq

Genomic Coordinates Forward (+)

20963811 .. 20965572

Gene Structure 1762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g23710.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGGTGAAACCGGAATCGACGTCAGAGTGATTAATCAGCCTTCGTCGACGCCGTCGCGCGTGAAGAAGAAGAAGAGAGCGACAACCCAGAAATCTCCCCAGAAGGCTCCGCCGTCTTCTTCCGCGGAGGACGACGACGGGAGTCCAATCAGGCAAATTCTCTGTGTCAAAAACAAGGTTGATGTTAAACACTTCGAGGACGTCGAGGACTGCTTCATCTTGGATTTCGATCCCTCGGAGCTGGTGCAGTTGTTCAAGTTGTCCGTGTCGGATAATGGTGGTCGTGGTCACGATGGTTCCCCCGATATCGCTGTTGTTGCTGAGAAAGGACAGGTTGCTTGTAGAGACTATCCACATTCAAGGCACCTCTGCCTGAAATTTCCTTTCGGGACAACACCCCATGAGAGCTACTGTGATCTGTGCTACTGCTACGTTTGTGATTCTGCCGCTCCATGTGGGTTATGGAAACTATCACATTGCCATGCCGCTGGGCACATTGGTGATTGGAAGTCTAAAAGGATGTTGAGGAAGCAGCAAGCCGCGGTGAAGAATGCCTTTAGAATTATCTCTGTCTTAACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

194

Amino Acids

21.34

Weight (kDa)

8.5

Isoelectric Point (pI)

52.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27660 AT5G54148 AT5G54150
fragaria_vesca	FvH4_7g33000 FvH4_7g33000 FvH4_7g33000
malus_domestica	MD01G1229200.v1.1 MD07G1211900.v1.1 MD07G1300600.v1.1 MD07G1300800.v1.1
prunus_persica	Prupe.2G319800_v2.0.a1 Prupe.2G319800_v2.0.a1
pyrus_communis	pycom01g23710 pycom01g23730 pycom07g19510 pycom07g27340
rosa_chinensis	RchiOBHm_Chr1g0382971
rosa_laevigata	RLG00000026143
rosa_multiflora	Rmu_sc0000634.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277730
rosa_rugosa	Rorug01G0437500
rosa_samantha	Rh1AG463000 Rh1BG420000 Rh1CG433800 Rh1DG452000 Rh1DG452700
rosa_wichuraiana	Rw1G040900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	24, 204
AccB1I	GGYRCC	1 cut(s)	363
AccBSI	CCGCTC	1 cut(s)	449
AccI	GTMKAC	1 cut(s)	47
AccII	CGCG	4 cut(s)	58, 60, 125, 542
AciI	CCGC	7 cut(s)	110, 123, 125, 447, 486, 540, 542
AclWI	GGATC	1 cut(s)	224
AcsI	RAATTY	2 cut(s)	156, 377
AcyI	GRCGYC	3 cut(s)	21, 50, 201
AgsI	TTSAA	2 cut(s)	256, 360
AleI	CACNNNNGTG	1 cut(s)	498
AluBI	AGCT	2 cut(s)	241, 408
AluI	AGCT	2 cut(s)	241, 408
Alw26I	GTCTC	1 cut(s)	339
AlwI	GGATC	1 cut(s)	224
ApeKI	GCWGC	1 cut(s)	532
ApoI	RAATTY	2 cut(s)	156, 377
AseI	ATTAAT	1 cut(s)	33
AspLEI	GCGC	1 cut(s)	60
AsuHPI	GGTGA	3 cut(s)	17, 512, 556
BaeGI	GKGCMC	1 cut(s)	495
BanI	GGYRCC	1 cut(s)	363
BbsI	GAAGAC	1 cut(s)	108
BbvI	GCAGC	1 cut(s)	544
BccI	CCATC	1 cut(s)	287
BceAI	ACGGC	2 cut(s)	37, 97
BcoDI	GTCTC	1 cut(s)	339
BisI	GCNGC	4 cut(s)	447, 486, 533, 540
BlsI	GCNGC	4 cut(s)	448, 487, 534, 541
BmiI	GGNNCC	3 cut(s)	108, 298, 365
BoxI	GACNNNNGTC	1 cut(s)	141
BpiI	GAAGAC	1 cut(s)	108
BsaBI	GATNNNNATC	1 cut(s)	228
BsaHI	GRCGYC	3 cut(s)	21, 50, 201
BsaJI	CCNNGG	3 cut(s)	123, 234, 540
BsaWI	WCCGGW	1 cut(s)	11
Bse3DI	GCAATG	1 cut(s)	475
Bse8I	GATNNNNATC	1 cut(s)	228
BseDI	CCNNGG	3 cut(s)	123, 234, 540
BseGI	GGATG	1 cut(s)	525
BseJI	GATNNNNATC	1 cut(s)	228
BseMI	GCAATG	1 cut(s)	475
BseMII	CTCAG	1 cut(s)	312
BseSI	GKGCMC	1 cut(s)	495
BseXI	GCAGC	1 cut(s)	544
BseYI	CCCAGC	1 cut(s)	488
BsgI	GTGCAG	1 cut(s)	266
Bsh1236I	CGCG	4 cut(s)	58, 60, 125, 542
BshNI	GGYRCC	1 cut(s)	363
BsiSI	CCGG	1 cut(s)	12
BslFI	GGGAC	1 cut(s)	403
BsmAI	GTCTC	1 cut(s)	339
BsmFI	GGGAC	1 cut(s)	403
BsmI	GAATGC	1 cut(s)	556
Bsp1286I	GDGCHC	1 cut(s)	495
Bsp143I	GATC	2 cut(s)	229, 415
BspACI	CCGC	7 cut(s)	110, 123, 125, 447, 486, 540, 542
BspCNI	CTCAG	1 cut(s)	313
BspFNI	CGCG	4 cut(s)	58, 60, 125, 542
BspLI	GGNNCC	3 cut(s)	108, 298, 365
BspPI	GGATC	1 cut(s)	224
BspT107I	GGYRCC	1 cut(s)	363
BsrBI	CCGCTC	1 cut(s)	449
BsrDI	GCAATG	1 cut(s)	475
BssECI	CCNNGG	3 cut(s)	123, 234, 540
BssMI	GATC	2 cut(s)	229, 415
BssNI	GRCGYC	3 cut(s)	21, 50, 201
Bst4CI	ACNGT	1 cut(s)	413
Bst6I	CTCTTC	1 cut(s)	68
BstACI	GRCGYC	3 cut(s)	21, 50, 201
BstC8I	GCNNGC	1 cut(s)	537
BstDEI	CTNAG	1 cut(s)	321
BstDSI	CCRYGG	2 cut(s)	123, 540
BstF5I	GGATG	1 cut(s)	525
BstFNI	CGCG	4 cut(s)	58, 60, 125, 542
BstHHI	GCGC	1 cut(s)	60
BstKTI	GATC	2 cut(s)	232, 418
BstMAI	GTCTC	1 cut(s)	339
BstMBI	GATC	2 cut(s)	229, 415
BstMWI	GCNNNNNNNGC	1 cut(s)	317
BstPAI	GACNNNNGTC	1 cut(s)	141
BstSLI	GKGCMC	1 cut(s)	495
BstUI	CGCG	4 cut(s)	58, 60, 125, 542
BstV1I	GCAGC	1 cut(s)	544
BstV2I	GAAGAC	1 cut(s)	108
BstXI	CCANNNNNNTGG	1 cut(s)	488
BtgI	CCRYGG	2 cut(s)	123, 540
BtsCI	GGATG	1 cut(s)	525
Cac8I	GCNNGC	1 cut(s)	537
CfoI	GCGC	1 cut(s)	60
Cfr42I	CCGCGG	2 cut(s)	126, 543
CseI	GACGC	1 cut(s)	58
CviAII	CATG	3 cut(s)	401, 453, 482
CviJI	RGCY	5 cut(s)	40, 107, 241, 408, 539
CviKI_1	RGCY	5 cut(s)	40, 107, 241, 408, 539
DdeI	CTNAG	1 cut(s)	321
DpnI	GATC	2 cut(s)	231, 417
DpnII	GATC	2 cut(s)	229, 415
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
EciI	GGCGGA	1 cut(s)	99
Eco32I	GATATC	1 cut(s)	307
EcoRV	GATATC	1 cut(s)	307
FaeI	CATG	3 cut(s)	404, 456, 485
FaiI	YATR	4 cut(s)	402, 454, 463, 483
FalI	AAGNNNNNCTT	2 cut(s)	539, 571
FaqI	GGGAC	1 cut(s)	403
FatI	CATG	3 cut(s)	400, 452, 481
FblI	GTMKAC	1 cut(s)	47
Fnu4HI	GCNGC	4 cut(s)	447, 486, 533, 540
FokI	GGATG	1 cut(s)	532
Fsp4HI	GCNGC	4 cut(s)	447, 486, 533, 540
GlaI	GCGC	1 cut(s)	59
GluI	GCNGC	4 cut(s)	447, 486, 533, 540
GsaI	CCCAGC	1 cut(s)	492
HapII	CCGG	1 cut(s)	12
HgaI	GACGC	1 cut(s)	58
HhaI	GCGC	1 cut(s)	60
Hin1I	GRCGYC	3 cut(s)	21, 50, 201
Hin1II	CATG	3 cut(s)	404, 456, 485
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
HincII	GTYRAC	1 cut(s)	48
HindII	GTYRAC	1 cut(s)	48
HinfI	GANTC	3 cut(s)	15, 142, 440
HpaII	CCGG	1 cut(s)	12
HphI	GGTGA	3 cut(s)	17, 512, 556
Hpy166II	GTNNAC	1 cut(s)	48
Hpy188I	TCNGA	3 cut(s)	26, 238, 271
Hpy188III	TCNNGA	2 cut(s)	290, 388
Hpy8I	GTNNAC	1 cut(s)	48
Hpy99I	CGWCG	7 cut(s)	23, 49, 52, 58, 137, 140, 206
HpyAV	CCTTC	2 cut(s)	51, 97
HpyCH4III	ACNGT	1 cut(s)	413
HpyCH4IV	ACGT	4 cut(s)	21, 201, 432, 578
HpyCH4V	TGCA	1 cut(s)	247
HpyF10VI	GCNNNNNNNGC	1 cut(s)	317
HpyF3I	CTNAG	1 cut(s)	321
HpySE526I	ACGT	4 cut(s)	21, 201, 432, 578
Hsp92I	GRCGYC	3 cut(s)	21, 50, 201
Hsp92II	CATG	3 cut(s)	404, 456, 485
HspAI	GCGC	1 cut(s)	58
KspI	CCGCGG	2 cut(s)	126, 543
Kzo9I	GATC	2 cut(s)	229, 415
LmnI	GCTCC	3 cut(s)	112, 238, 454
LpnPI	CCDG	8 cut(s)	25, 101, 113, 136, 227, 317, 386, 474
Lsp1109I	GCAGC	1 cut(s)	544
MaeII	ACGT	4 cut(s)	21, 201, 432, 578
MaeIII	GTNAC	1 cut(s)	287
MalI	GATC	2 cut(s)	231, 417
MbiI	CCGCTC	1 cut(s)	449
MboI	GATC	2 cut(s)	229, 415
MboII	GAAGA	7 cut(s)	76, 79, 82, 85, 108, 111, 559
MhlI	GDGCHC	1 cut(s)	495
MluCI	AATT	3 cut(s)	156, 377, 561
MlyI	GAGTC	1 cut(s)	151
MmeI	TCCRAC	1 cut(s)	249
MnlI	CCTC	6 cut(s)	121, 190, 199, 244, 377, 519
MseI	TTAA	3 cut(s)	33, 186, 575
MslI	CAYNNNNRTG	2 cut(s)	480, 498
MspA1I	CMGCKG	3 cut(s)	125, 488, 542
MspI	CCGG	1 cut(s)	12
Mva1269I	GAATGC	1 cut(s)	556
MvnI	CGCG	4 cut(s)	58, 60, 125, 542
MwoI	GCNNNNNNNGC	1 cut(s)	317
NdeII	GATC	2 cut(s)	229, 415
NlaIII	CATG	3 cut(s)	404, 456, 485
NlaIV	GGNNCC	3 cut(s)	108, 298, 365
NmuCI	GTSAC	1 cut(s)	287
OliI	CACNNNNGTG	1 cut(s)	498
PcsI	WCGNNNNNNNCGW	2 cut(s)	50, 201
PctI	GAATGC	1 cut(s)	556
PfeI	GAWTC	2 cut(s)	15, 440
PflFI	GACNNNGTC	1 cut(s)	52
PkrI	GCNGC	4 cut(s)	448, 487, 534, 541
PleI	GAGTC	1 cut(s)	150
PpsI	GAGTC	1 cut(s)	150
PshAI	GACNNNNGTC	1 cut(s)	141
PshBI	ATTAAT	1 cut(s)	33
PspFI	CCCAGC	1 cut(s)	488
PspN4I	GGNNCC	3 cut(s)	108, 298, 365
PsyI	GACNNNGTC	1 cut(s)	52
RseI	CAYNNNNRTG	2 cut(s)	480, 498
SacII	CCGCGG	2 cut(s)	126, 543
SalI	GTCGAC	1 cut(s)	46
SaqAI	TTAA	3 cut(s)	33, 186, 575
SatI	GCNGC	4 cut(s)	447, 486, 533, 540
Sau3AI	GATC	2 cut(s)	229, 415
SchI	GAGTC	1 cut(s)	151
SduI	GDGCHC	1 cut(s)	495
SetI	ASST	9 cut(s)	24, 180, 204, 243, 336, 369, 410, 435, 581
Sfr303I	CCGCGG	2 cut(s)	126, 543
SgrBI	CCGCGG	2 cut(s)	126, 543
SgrDI	CGTCGACG	1 cut(s)	46
SmiMI	CAYNNNNRTG	2 cut(s)	480, 498
Sse9I	AATT	3 cut(s)	156, 377, 561
SsiI	CCGC	7 cut(s)	110, 123, 125, 447, 486, 540, 542
TaaI	ACNGT	1 cut(s)	413
TaiI	ACGT	4 cut(s)	24, 204, 435, 581
TaqI	TCGA	5 cut(s)	18, 47, 195, 204, 228
TasI	AATT	3 cut(s)	156, 377, 561
TauI	GCSGC	3 cut(s)	449, 488, 542
TfiI	GAWTC	2 cut(s)	15, 440
Tru1I	TTAA	3 cut(s)	33, 186, 575
Tru9I	TTAA	3 cut(s)	33, 186, 575
TseFI	GTSAC	1 cut(s)	287
TseI	GCWGC	1 cut(s)	532
Tsp45I	GTSAC	1 cut(s)	287
TspDTI	ATGAA	1 cut(s)	205
TspGWI	ACGGA	1 cut(s)	253
Tth111I	GACNNNGTC	1 cut(s)	52
VspI	ATTAAT	1 cut(s)	33
XapI	RAATTY	2 cut(s)	156, 377
XcmI	CCANNNNNNNNNTGG	1 cut(s)	459
XmiI	GTMKAC	1 cut(s)	47
ZraI	GACGTC	2 cut(s)	22, 202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.