Prupe.2G319800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0006092
Physical Location & Seq
Forward (+)
29829156 .. 29830763
1608 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G319800.2

Sequence Viewer

Length: 858 bp
ATGGGCCTTCTGGGCCACTTTGCCGTATCGAATCTCAGTGTCTCAATTGATGCCGGTCCTCGTTTCCGTTTCGAAAAAGGAGCATGTCGTTTAATGATGTGGGATCGTGCGAGTCAAAGCGCCATTGTTCAGCGAAGAGGGCAGCATTCGGGGAAATTCGAAAAGATTCAAATCCTGGGTAACCAAAAGAGAGCGAGAGCGACAGAGAGAATGGGGGAAAGTGAAAACAACATGAAAGCGGTAAAGTTATCGAGCCCCTCAGGCCAGAAGAAGAAAAAGAGAGTCGCTCCGAGAACTTCGTCTTCTTCCTTGGAGGAAGATGGCAGCCCCGTCAGACACATTCTCTGTGTCAAAAACAAGGTCGATGTCAAGCAGTTCGAGGAAGTCGATGACTGTTTCATCTTAGATTTCGACCCATTTGAGCCCATTCAGTTATCCAAGTTATCCGTGTCCGATAATTTTGCTGGTCATAATGCTCCGGAGTCTCCTGACGTCGCCGTTGTTGCTGAGAAAGGCCAGGTTGTTTGTTTTCCCCATGACCCATTTGATGTCTCTCTCTGCTCTTTTCTTTTCAATCAATTTTCTTTCTCTGTTGCTCTGTTTGGTTGCTGTGGAAATCGTAACCCCATTTTGCCTGTTGCTTGTAGAGATTATCCACATTCAAGGCATCTCTGTTTGAAATTCCCTTTTGAAACAACGCCTCACGAAAGCTACTGTGAGCTGTGCTACTGCTATGTATGTGATTCAGCAGCTCCATGTGTGCTATGGAAATTAGCACATTGCCATGCTTCTGAGCACATTGGTGATTGGAAGTCCAGAAGATATTTAAGGAAGCAGCAAGCGGCTGCTAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

286

Amino Acids

32.02

Weight (kDa)

8.77

Isoelectric Point (pI)

53.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 495
AccIII TCCGGA 1 cut(s) 478
AciI CCGC 2 cut(s) 239, 842
AclWI GGATC 1 cut(s) 111
AcsI RAATTY 2 cut(s) 155, 680
AcyI GRCGYC 1 cut(s) 492
AgsI TTSAA 5 cut(s) 170, 574, 663, 679, 692
AjnI CCWGG 2 cut(s) 174, 516
AleI CACNNNNGTG 1 cut(s) 801
AluBI AGCT 3 cut(s) 711, 721, 752
AluI AGCT 3 cut(s) 711, 721, 752
Alw21I GWGCWC 1 cut(s) 798
Alw26I GTCTC 3 cut(s) 46, 489, 556
AlwI GGATC 1 cut(s) 111
Aor13HI TCCGGA 1 cut(s) 478
AoxI GGCC 4 cut(s) 4, 13, 262, 514
ApeKI GCWGC 5 cut(s) 142, 324, 749, 835, 845
ApoI RAATTY 2 cut(s) 155, 680
ArsI GACNNNNNNTTYG 2 cut(s) 345, 377
Asp700I GAANNNNTTC 1 cut(s) 165
AspLEI GCGC 1 cut(s) 122
AspS9I GGNCC 3 cut(s) 4, 13, 56
AsuHPI GGTGA 1 cut(s) 815
AsuII TTCGAA 2 cut(s) 72, 159
AvaII GGWCC 1 cut(s) 56
AxyI CCTNAGG 1 cut(s) 259
BanII GRGCYC 2 cut(s) 257, 426
BbsI GAAGAC 1 cut(s) 294
Bbv12I GWGCWC 1 cut(s) 798
BbvI GCAGC 5 cut(s) 154, 336, 761, 832, 847
BccI CCATC 1 cut(s) 314
BceAI ACGGC 2 cut(s) 8, 482
BcgI CGANNNNNNTGC 2 cut(s) 443, 477
BciT130I CCWGG 2 cut(s) 176, 518
BcoDI GTCTC 3 cut(s) 46, 489, 556
BfoI RGCGCY 1 cut(s) 123
BglI GCCNNNNNGGC 2 cut(s) 12, 261
BisI GCNGC 6 cut(s) 143, 325, 750, 836, 843, 846
BlsI GCNGC 6 cut(s) 144, 326, 751, 837, 844, 847
Bme1390I CCNGG 2 cut(s) 176, 518
Bme18I GGWCC 1 cut(s) 56
BmgT120I GGNCC 3 cut(s) 4, 13, 56
BmrFI CCNGG 2 cut(s) 176, 518
BmsI GCATC 2 cut(s) 40, 676
BpiI GAAGAC 1 cut(s) 294
BplI GAGNNNNNCTC 2 cut(s) 271, 303
Bpu14I TTCGAA 2 cut(s) 72, 159
BsaBI GATNNNNATC 1 cut(s) 170
BsaHI GRCGYC 1 cut(s) 492
BsaJI CCNNGG 2 cut(s) 175, 309
BsaWI WCCGGW 1 cut(s) 478
Bse118I RCCGGY 1 cut(s) 53
Bse21I CCTNAGG 1 cut(s) 259
Bse3DI GCAATG 1 cut(s) 778
Bse8I GATNNNNATC 1 cut(s) 170
BseAI TCCGGA 1 cut(s) 478
BseBI CCWGG 2 cut(s) 176, 518
BseDI CCNNGG 2 cut(s) 175, 309
BseJI GATNNNNATC 1 cut(s) 170
BseMI GCAATG 1 cut(s) 778
BseMII CTCAG 4 cut(s) 49, 273, 498, 783
BseXI GCAGC 5 cut(s) 154, 336, 761, 832, 847
BshFI GGCC 4 cut(s) 6, 15, 264, 516
BsiHKAI GWGCWC 1 cut(s) 798
BsiSI CCGG 2 cut(s) 54, 479
BsmAI GTCTC 3 cut(s) 46, 489, 556
BsmI GAATGC 1 cut(s) 145
BsnI GGCC 4 cut(s) 6, 15, 264, 516
Bsp119I TTCGAA 2 cut(s) 72, 159
Bsp1286I GDGCHC 3 cut(s) 257, 426, 798
Bsp13I TCCGGA 1 cut(s) 478
Bsp143I GATC 1 cut(s) 103
BspACI CCGC 2 cut(s) 239, 842
BspANI GGCC 4 cut(s) 6, 15, 264, 516
BspCNI CTCAG 4 cut(s) 48, 272, 499, 784
BspEI TCCGGA 1 cut(s) 478
BspPI GGATC 1 cut(s) 111
BspT104I TTCGAA 2 cut(s) 72, 159
BsrDI GCAATG 1 cut(s) 778
BsrFI RCCGGY 1 cut(s) 53
BssAI RCCGGY 1 cut(s) 53
BssECI CCNNGG 2 cut(s) 175, 309
BssMI GATC 1 cut(s) 103
BssNI GRCGYC 1 cut(s) 492
BssT1I CCWWGG 1 cut(s) 309
Bst2UI CCWGG 2 cut(s) 176, 518
Bst4CI ACNGT 2 cut(s) 395, 716
Bst6I CTCTTC 1 cut(s) 130
BstACI GRCGYC 1 cut(s) 492
BstBI TTCGAA 2 cut(s) 72, 159
BstC8I GCNNGC 1 cut(s) 840
BstDEI CTNAG 6 cut(s) 35, 259, 403, 507, 792, 849
BstEII GGTNACC 1 cut(s) 179
BstH2I RGCGCY 1 cut(s) 123
BstHHI GCGC 1 cut(s) 122
BstKTI GATC 1 cut(s) 106
BstMAI GTCTC 3 cut(s) 46, 489, 556
BstMBI GATC 1 cut(s) 103
BstMWI GCNNNNNNNGC 4 cut(s) 12, 139, 261, 503
BstNI CCWGG 2 cut(s) 176, 518
BstNSI RCATGY 1 cut(s) 87
BstPI GGTNACC 1 cut(s) 179
BstSCI CCNGG 2 cut(s) 174, 516
BstV1I GCAGC 5 cut(s) 154, 336, 761, 832, 847
BstV2I GAAGAC 1 cut(s) 294
Bsu36I CCTNAGG 1 cut(s) 259
BsuRI GGCC 4 cut(s) 6, 15, 264, 516
BtsIMutI CAGTG 1 cut(s) 43
Cac8I GCNNGC 1 cut(s) 840
CfoI GCGC 1 cut(s) 122
Cfr10I RCCGGY 1 cut(s) 53
Cfr13I GGNCC 3 cut(s) 4, 13, 56
CviAII CATG 5 cut(s) 84, 232, 536, 756, 785
DdeI CTNAG 6 cut(s) 35, 259, 403, 507, 792, 849
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
Eam1104I CTCTTC 1 cut(s) 130
EarI CTCTTC 1 cut(s) 130
Eco130I CCWWGG 1 cut(s) 309
Eco24I GRGCYC 2 cut(s) 257, 426
Eco47I GGWCC 1 cut(s) 56
Eco81I CCTNAGG 1 cut(s) 259
Eco91I GGTNACC 1 cut(s) 179
EcoO65I GGTNACC 1 cut(s) 179
EcoRII CCWGG 2 cut(s) 174, 516
EcoT14I CCWWGG 1 cut(s) 309
EcoT38I GRGCYC 2 cut(s) 257, 426
ErhI CCWWGG 1 cut(s) 309
FaeI CATG 5 cut(s) 87, 235, 539, 759, 788
FaiI YATR 9 cut(s) 85, 233, 471, 537, 735, 739, 757, 766, 786
FatI CATG 5 cut(s) 83, 231, 535, 755, 784
Fnu4HI GCNGC 6 cut(s) 143, 325, 750, 836, 843, 846
FriOI GRGCYC 2 cut(s) 257, 426
Fsp4HI GCNGC 6 cut(s) 143, 325, 750, 836, 843, 846
GlaI GCGC 1 cut(s) 121
GluI GCNGC 6 cut(s) 143, 325, 750, 836, 843, 846
HaeII RGCGCY 1 cut(s) 123
HaeIII GGCC 4 cut(s) 6, 15, 264, 516
HapII CCGG 2 cut(s) 54, 479
HhaI GCGC 1 cut(s) 122
Hin1I GRCGYC 1 cut(s) 492
Hin1II CATG 5 cut(s) 87, 235, 539, 759, 788
Hin6I GCGC 1 cut(s) 120
HinP1I GCGC 1 cut(s) 120
HinfI GANTC 6 cut(s) 31, 112, 166, 282, 482, 743
HpaII CCGG 2 cut(s) 54, 479
HphI GGTGA 1 cut(s) 815
Hpy188I TCNGA 4 cut(s) 291, 335, 454, 793
Hpy188III TCNNGA 4 cut(s) 479, 488, 704, 816
Hpy99I CGWCG 1 cut(s) 497
HpyAV CCTTC 1 cut(s) 17
HpyCH4III ACNGT 2 cut(s) 395, 716
HpyCH4IV ACGT 1 cut(s) 492
HpyF10VI GCNNNNNNNGC 4 cut(s) 12, 139, 261, 503
HpyF3I CTNAG 6 cut(s) 35, 259, 403, 507, 792, 849
HpySE526I ACGT 1 cut(s) 492
Hsp92I GRCGYC 1 cut(s) 492
Hsp92II CATG 5 cut(s) 87, 235, 539, 759, 788
HspAI GCGC 1 cut(s) 120
Kpn2I TCCGGA 1 cut(s) 478
Kzo9I GATC 1 cut(s) 103
LmnI GCTCC 4 cut(s) 80, 292, 481, 757
Lsp1109I GCAGC 5 cut(s) 154, 336, 761, 832, 847
LweI GCATC 2 cut(s) 40, 676
MaeII ACGT 1 cut(s) 492
MaeIII GTNAC 2 cut(s) 179, 620
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MboII GAAGA 7 cut(s) 147, 280, 283, 294, 297, 329, 831
MfeI CAATTG 1 cut(s) 45
MhlI GDGCHC 3 cut(s) 257, 426, 798
MluCI AATT 6 cut(s) 45, 155, 457, 578, 680, 770
MlyI GAGTC 3 cut(s) 121, 291, 491
MnlI CCTC 6 cut(s) 69, 131, 268, 307, 373, 711
MroI TCCGGA 1 cut(s) 478
MroXI GAANNNNTTC 1 cut(s) 165
MseI TTAA 2 cut(s) 92, 827
MslI CAYNNNNRTG 2 cut(s) 783, 801
MspI CCGG 2 cut(s) 54, 479
MspR9I CCNGG 2 cut(s) 176, 518
MunI CAATTG 1 cut(s) 45
Mva1269I GAATGC 1 cut(s) 145
MvaI CCWGG 2 cut(s) 176, 518
MwoI GCNNNNNNNGC 4 cut(s) 12, 139, 261, 503
NdeII GATC 1 cut(s) 103
NlaIII CATG 5 cut(s) 87, 235, 539, 759, 788
NspI RCATGY 1 cut(s) 87
NspV TTCGAA 2 cut(s) 72, 159
OliI CACNNNNGTG 1 cut(s) 801
PcsI WCGNNNNNNNCGW 1 cut(s) 384
PctI GAATGC 1 cut(s) 145
PdmI GAANNNNTTC 1 cut(s) 165
PfeI GAWTC 3 cut(s) 31, 166, 743
PkrI GCNGC 6 cut(s) 144, 326, 751, 837, 844, 847
PleI GAGTC 3 cut(s) 120, 290, 490
PpsI GAGTC 3 cut(s) 120, 290, 490
Psp6I CCWGG 2 cut(s) 174, 516
PspEI GGTNACC 1 cut(s) 179
PspGI CCWGG 2 cut(s) 174, 516
PspPI GGNCC 3 cut(s) 4, 13, 56
RseI CAYNNNNRTG 2 cut(s) 783, 801
SaqAI TTAA 2 cut(s) 92, 827
SatI GCNGC 6 cut(s) 143, 325, 750, 836, 843, 846
Sau3AI GATC 1 cut(s) 103
Sau96I GGNCC 3 cut(s) 4, 13, 56
SchI GAGTC 3 cut(s) 121, 291, 491
ScrFI CCNGG 2 cut(s) 176, 518
SduI GDGCHC 3 cut(s) 257, 426, 798
SetI ASST 6 cut(s) 363, 495, 522, 713, 723, 754
SfaNI GCATC 2 cut(s) 40, 676
SfiI GGCCNNNNNGGCC 1 cut(s) 12
SfuI TTCGAA 2 cut(s) 72, 159
SinI GGWCC 1 cut(s) 56
SmiMI CAYNNNNRTG 2 cut(s) 783, 801
Sse9I AATT 6 cut(s) 45, 155, 457, 578, 680, 770
SsiI CCGC 2 cut(s) 239, 842
StyD4I CCNGG 2 cut(s) 174, 516
StyI CCWWGG 1 cut(s) 309
TaaI ACNGT 2 cut(s) 395, 716
TaiI ACGT 1 cut(s) 495
TaqI TCGA 8 cut(s) 29, 72, 159, 251, 363, 378, 387, 411
TasI AATT 6 cut(s) 45, 155, 457, 578, 680, 770
TauI GCSGC 1 cut(s) 845
TfiI GAWTC 3 cut(s) 31, 166, 743
Tru1I TTAA 2 cut(s) 92, 827
Tru9I TTAA 2 cut(s) 92, 827
TscAI CASTG 1 cut(s) 43
TseI GCWGC 5 cut(s) 142, 324, 749, 835, 845
TspDTI ATGAA 2 cut(s) 248, 388
TspGWI ACGGA 2 cut(s) 56, 436
TspRI CASTG 1 cut(s) 43
VpaK11BI GGWCC 1 cut(s) 56
XapI RAATTY 2 cut(s) 155, 680
XceI RCATGY 1 cut(s) 87
XcmI CCANNNNNNNNNTGG 1 cut(s) 762
XmnI GAANNNNTTC 1 cut(s) 165
ZraI GACGTC 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.