Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0006092

Physical Location & Seq

Genomic Coordinates Forward (+)

23600518 .. 23602082

Gene Structure 1565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g33000.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGAGAAGAGACGAACCCCTTCAAAAAGAGCCCACAAATTCAAAGTCGTTTCTATTATTTCATCCAAGGCAGAAGAGAGGAGCAAGAACACCCCAAATTCAAAATAAACTATTCAAATCTTGTGTCCCCCCAATGCCCCCAAAACGCAAAACCCTCGCCCCTCAGAGAAGCAGTGAGAGATTGAAAATCAAAATGAGCAAAACCCTCGACAAATCTCCAGTTTCTCCGATCGATTTATCGACCCCAACTCCTCCTCTGCCGGAGAAGAAGAAACATAAGCATTATCGGGCCGTCACTACCAAGAAGCCCACTTCGTCCGGGCCGGAACAAGAGCAAGACGACGGGACTCCGATCAGGCACCACCTCATTGTGACCAGAGAGGACGATGTGAAGCGTTACGAGGAGCTCGATGATTGCTTCATTCTGGGTTTCGACCCGATTGGGATGAACAGGTGTTCTGTGGCGGATAAGGTTGCTGGGTCGCCGGAGATCGCCATTGTTGCAGAGAAAGGGCAGGTGGCTTGCAGAGATTTTCCACATTCGAGGCATATGTGCATTAAGTTCCCGTTTGAGACAACGGCGCATGAGAAATACTGTGAGCTGTGTTACTGCTATGTGTGCGACACAGCAGCTCCCTGCAAGTCATGGTCATCATCTAGCAACAATGCGTTGTTCTCACATTGTAATGCTTATGACAGCAATGGTGTCTGGAAGCAGGAAAGGATATTGAGAAAGCCGGTATCAGCTGTGCTTAAGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

254

Amino Acids

28.8

Weight (kDa)

9.32

Isoelectric Point (pI)

57.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27660 AT5G54148 AT5G54150
fragaria_vesca	FvH4_7g33000 FvH4_7g33000 FvH4_7g33000
malus_domestica	MD01G1229200.v1.1 MD07G1211900.v1.1 MD07G1300600.v1.1 MD07G1300800.v1.1
prunus_persica	Prupe.2G319800_v2.0.a1 Prupe.2G319800_v2.0.a1
pyrus_communis	pycom01g23710 pycom01g23730 pycom07g19510 pycom07g27340
rosa_chinensis	RchiOBHm_Chr1g0382971
rosa_laevigata	RLG00000026143
rosa_multiflora	Rmu_sc0000634.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277730
rosa_rugosa	Rorug01G0437500
rosa_samantha	Rh1AG463000 Rh1BG420000 Rh1CG433800 Rh1DG452000 Rh1DG452700
rosa_wichuraiana	Rw1G040900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	505
Acc36I	ACCTGC	1 cut(s)	505
AccB1I	GGYRCC	1 cut(s)	357
AciI	CCGC	1 cut(s)	464
AcsI	RAATTY	2 cut(s)	37, 96
AflII	CTTAAG	1 cut(s)	752
AgsI	TTSAA	5 cut(s)	23, 42, 101, 115, 184
AluBI	AGCT	4 cut(s)	406, 601, 632, 746
AluI	AGCT	4 cut(s)	406, 601, 632, 746
Alw21I	GWGCWC	1 cut(s)	408
Alw26I	GTCTC	2 cut(s)	3, 566
AoxI	GGCC	2 cut(s)	288, 320
ApeKI	GCWGC	1 cut(s)	629
ApoI	RAATTY	2 cut(s)	37, 96
ArsI	GACNNNNNNTTYG	4 cut(s)	29, 61, 108, 140
Asp700I	GAANNNNTTC	1 cut(s)	18
AspLEI	GCGC	1 cut(s)	583
AspS9I	GGNCC	2 cut(s)	288, 320
AsuC2I	CCSGG	1 cut(s)	319
BanI	GGYRCC	1 cut(s)	357
BanII	GRGCYC	2 cut(s)	33, 408
Bbv12I	GWGCWC	1 cut(s)	408
BbvI	GCAGC	1 cut(s)	641
BceAI	ACGGC	2 cut(s)	275, 594
BcgI	CGANNNNNNTGC	4 cut(s)	136, 170, 187, 221
BcnI	CCSGG	1 cut(s)	319
BcoDI	GTCTC	2 cut(s)	3, 566
BfaI	CTAG	1 cut(s)	657
BfrI	CTTAAG	1 cut(s)	752
BfuAI	ACCTGC	1 cut(s)	505
BisI	GCNGC	1 cut(s)	630
BlsI	GCNGC	1 cut(s)	631
Bme1390I	CCNGG	1 cut(s)	319
BmgT120I	GGNCC	2 cut(s)	288, 320
BmiI	GGNNCC	1 cut(s)	359
BmrFI	CCNGG	1 cut(s)	319
BpmI	CTGGAG	1 cut(s)	201
BpuMI	CCSGG	1 cut(s)	319
Bsa29I	ATCGAT	1 cut(s)	231
BsaJI	CCNNGG	1 cut(s)	65
BsaXI	ACNNNNNCTCC	4 cut(s)	232, 262, 616, 646
Bse118I	RCCGGY	1 cut(s)	736
Bse1I	ACTGG	1 cut(s)	218
Bse3DI	GCAATG	1 cut(s)	706
BseCI	ATCGAT	1 cut(s)	231
BseDI	CCNNGG	1 cut(s)	65
BseGI	GGATG	2 cut(s)	61, 450
BseMI	GCAATG	1 cut(s)	706
BseMII	CTCAG	1 cut(s)	176
BseNI	ACTGG	1 cut(s)	218
BseRI	GAGGAG	4 cut(s)	93, 240, 243, 416
BseXI	GCAGC	1 cut(s)	641
BseYI	CCCAGC	1 cut(s)	476
Bsh1285I	CGRYCG	1 cut(s)	231
BshFI	GGCC	2 cut(s)	290, 322
BshNI	GGYRCC	1 cut(s)	357
BshVI	ATCGAT	1 cut(s)	231
BsiEI	CGRYCG	1 cut(s)	231
BsiHKAI	GWGCWC	1 cut(s)	408
BsiSI	CCGG	5 cut(s)	260, 318, 323, 485, 737
BslFI	GGGAC	2 cut(s)	110, 358
BsmAI	GTCTC	2 cut(s)	3, 566
BsmBI	CGTCTC	1 cut(s)	3
BsmFI	GGGAC	2 cut(s)	110, 358
BsnI	GGCC	2 cut(s)	290, 322
Bsp1286I	GDGCHC	2 cut(s)	33, 408
Bsp143I	GATC	3 cut(s)	228, 351, 489
BspACI	CCGC	1 cut(s)	464
BspANI	GGCC	2 cut(s)	290, 322
BspCNI	CTCAG	1 cut(s)	175
BspDI	ATCGAT	1 cut(s)	231
BspLI	GGNNCC	1 cut(s)	359
BspMI	ACCTGC	1 cut(s)	505
BspT107I	GGYRCC	1 cut(s)	357
BspTI	CTTAAG	1 cut(s)	752
BsrDI	GCAATG	1 cut(s)	706
BsrFI	RCCGGY	1 cut(s)	736
BsrI	ACTGG	1 cut(s)	218
BssAI	RCCGGY	1 cut(s)	736
BssECI	CCNNGG	1 cut(s)	65
BssMI	GATC	3 cut(s)	228, 351, 489
BssT1I	CCWWGG	1 cut(s)	65
Bst4CI	ACNGT	1 cut(s)	596
Bst6I	CTCTTC	1 cut(s)	68
BstAFI	CTTAAG	1 cut(s)	752
BstC8I	GCNNGC	1 cut(s)	523
BstDEI	CTNAG	1 cut(s)	162
BstF5I	GGATG	2 cut(s)	61, 450
BstHHI	GCGC	1 cut(s)	583
BstKTI	GATC	3 cut(s)	231, 354, 492
BstMAI	GTCTC	2 cut(s)	3, 566
BstMBI	GATC	3 cut(s)	228, 351, 489
BstMCI	CGRYCG	1 cut(s)	231
BstMWI	GCNNNNNNNGC	2 cut(s)	500, 618
BstSCI	CCNGG	1 cut(s)	317
BstV1I	GCAGC	1 cut(s)	641
Bsu15I	ATCGAT	1 cut(s)	231
BsuRI	GGCC	2 cut(s)	290, 322
BsuTUI	ATCGAT	1 cut(s)	231
BtsCI	GGATG	2 cut(s)	61, 450
BtsI	GCAGTG	1 cut(s)	178
BtsIMutI	CAGTG	1 cut(s)	178
BveI	ACCTGC	1 cut(s)	505
Cac8I	GCNNGC	1 cut(s)	523
CfoI	GCGC	1 cut(s)	583
Cfr10I	RCCGGY	1 cut(s)	736
Cfr13I	GGNCC	2 cut(s)	288, 320
ClaI	ATCGAT	1 cut(s)	231
CviAII	CATG	2 cut(s)	584, 645
DdeI	CTNAG	1 cut(s)	162
DpnI	GATC	3 cut(s)	230, 353, 491
DpnII	GATC	3 cut(s)	228, 351, 489
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
EciI	GGCGGA	1 cut(s)	479
Ecl136II	GAGCTC	1 cut(s)	406
Eco130I	CCWWGG	1 cut(s)	65
Eco24I	GRGCYC	2 cut(s)	33, 408
Eco53kI	GAGCTC	1 cut(s)	406
EcoICRI	GAGCTC	1 cut(s)	406
EcoT14I	CCWWGG	1 cut(s)	65
EcoT38I	GRGCYC	2 cut(s)	33, 408
ErhI	CCWWGG	1 cut(s)	65
Esp3I	CGTCTC	1 cut(s)	3
FaeI	CATG	2 cut(s)	587, 648
FaiI	YATR	7 cut(s)	276, 549, 551, 585, 615, 646, 693
FaqI	GGGAC	2 cut(s)	110, 358
FatI	CATG	2 cut(s)	583, 644
FauNDI	CATATG	1 cut(s)	549
Fnu4HI	GCNGC	1 cut(s)	630
FokI	GGATG	2 cut(s)	48, 457
FriOI	GRGCYC	2 cut(s)	33, 408
Fsp4HI	GCNGC	1 cut(s)	630
FspBI	CTAG	1 cut(s)	657
GlaI	GCGC	1 cut(s)	582
GluI	GCNGC	1 cut(s)	630
GsaI	CCCAGC	1 cut(s)	480
GsuI	CTGGAG	1 cut(s)	201
HaeIII	GGCC	2 cut(s)	290, 322
HapII	CCGG	5 cut(s)	260, 318, 323, 485, 737
HhaI	GCGC	1 cut(s)	583
Hin1II	CATG	2 cut(s)	587, 648
Hin6I	GCGC	1 cut(s)	581
HinP1I	GCGC	1 cut(s)	581
HinfI	GANTC	1 cut(s)	346
HpaII	CCGG	5 cut(s)	260, 318, 323, 485, 737
Hpy188I	TCNGA	3 cut(s)	165, 228, 351
Hpy188III	TCNNGA	1 cut(s)	709
Hpy99I	CGWCG	1 cut(s)	344
HpyAV	CCTTC	1 cut(s)	29
HpyCH4III	ACNGT	1 cut(s)	596
HpyCH4V	TGCA	4 cut(s)	503, 525, 555, 639
HpyF10VI	GCNNNNNNNGC	2 cut(s)	500, 618
HpyF3I	CTNAG	1 cut(s)	162
Hsp92II	CATG	2 cut(s)	587, 648
HspAI	GCGC	1 cut(s)	581
Kzo9I	GATC	3 cut(s)	228, 351, 489
LmnI	GCTCC	3 cut(s)	80, 403, 637
Lsp1109I	GCAGC	1 cut(s)	641
MaeI	CTAG	1 cut(s)	657
MaeIII	GTNAC	4 cut(s)	292, 370, 395, 605
MalI	GATC	3 cut(s)	230, 353, 491
MboI	GATC	3 cut(s)	228, 351, 489
MboII	GAAGA	4 cut(s)	18, 85, 277, 280
MhlI	GDGCHC	2 cut(s)	33, 408
MluCI	AATT	2 cut(s)	37, 96
MlyI	GAGTC	1 cut(s)	340
MroXI	GAANNNNTTC	1 cut(s)	18
MseI	TTAA	2 cut(s)	558, 753
MslI	CAYNNNNRTG	1 cut(s)	684
MspA1I	CMGCKG	1 cut(s)	746
MspCI	CTTAAG	1 cut(s)	752
MspI	CCGG	5 cut(s)	260, 318, 323, 485, 737
MspR9I	CCNGG	1 cut(s)	319
MwoI	GCNNNNNNNGC	2 cut(s)	500, 618
NciI	CCSGG	1 cut(s)	319
NdeI	CATATG	1 cut(s)	549
NdeII	GATC	3 cut(s)	228, 351, 489
NlaIII	CATG	2 cut(s)	587, 648
NlaIV	GGNNCC	1 cut(s)	359
NmuCI	GTSAC	2 cut(s)	292, 370
PaqCI	CACCTGC	1 cut(s)	505
PcsI	WCGNNNNNNNCGW	1 cut(s)	405
PdmI	GAANNNNTTC	1 cut(s)	18
PkrI	GCNGC	1 cut(s)	631
Ple19I	CGATCG	1 cut(s)	231
PleI	GAGTC	1 cut(s)	340
PpsI	GAGTC	1 cut(s)	340
Psp124BI	GAGCTC	1 cut(s)	408
PspFI	CCCAGC	1 cut(s)	476
PspN4I	GGNNCC	1 cut(s)	359
PspPI	GGNCC	2 cut(s)	288, 320
PvuI	CGATCG	1 cut(s)	231
PvuII	CAGCTG	1 cut(s)	746
RseI	CAYNNNNRTG	1 cut(s)	684
SacI	GAGCTC	1 cut(s)	408
SaqAI	TTAA	2 cut(s)	558, 753
SatI	GCNGC	1 cut(s)	630
Sau3AI	GATC	3 cut(s)	228, 351, 489
Sau96I	GGNCC	2 cut(s)	288, 320
SchI	GAGTC	1 cut(s)	340
ScrFI	CCNGG	1 cut(s)	319
SduI	GDGCHC	2 cut(s)	33, 408
SetI	ASST	8 cut(s)	366, 408, 455, 474, 519, 603, 634, 748
SmiMI	CAYNNNNRTG	1 cut(s)	684
SmlI	CTYRAG	1 cut(s)	752
SmoI	CTYRAG	1 cut(s)	752
Sse9I	AATT	2 cut(s)	37, 96
SsiI	CCGC	1 cut(s)	464
SspMI	CTAG	1 cut(s)	657
SstI	GAGCTC	1 cut(s)	408
StyD4I	CCNGG	1 cut(s)	317
StyI	CCWWGG	1 cut(s)	65
TaaI	ACNGT	1 cut(s)	596
TaqI	TCGA	6 cut(s)	207, 231, 239, 408, 432, 542
TasI	AATT	2 cut(s)	37, 96
Tru1I	TTAA	2 cut(s)	558, 753
Tru9I	TTAA	2 cut(s)	558, 753
TscAI	CASTG	1 cut(s)	178
TseFI	GTSAC	2 cut(s)	292, 370
TseI	GCWGC	1 cut(s)	629
Tsp45I	GTSAC	2 cut(s)	292, 370
TspDTI	ATGAA	3 cut(s)	50, 409, 461
TspRI	CASTG	1 cut(s)	178
Vha464I	CTTAAG	1 cut(s)	752
XapI	RAATTY	2 cut(s)	37, 96
XmnI	GAANNNNTTC	1 cut(s)	18
XspI	CTAG	1 cut(s)	657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.