MD07G1211900.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0006092
Physical Location & Seq
Reverse (-)
29037790 .. 29038858
1069 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1211900.v1.1.491

Sequence Viewer

Length: 546 bp
ATGAGCGAAATCGGAATCGATGTCAAAGCGATTAATCTGTCGTCGAGGACGCCTTCGCGCGAGAAAAAGGGAGTGACAACCGAGAAGACTCCCCAGAATGGCCCGTCGTCTTCTTCCGCGGAGGACGAGGACGGGAGTCCAATCAGGCACATTGTCTGTGTCAAAAACAAGGTCGATGTCAAACGCTTTGAGGACGTCGAGGACTGCTTCATCTTGGATTTCGACCCTTTTGAGCCGGTGCAATCCAAGTTGTCCGTGTTGGATAATGGTGGTGGTGGTCACGCTGGTTCTCCCGATATCACTATTGTTGCTGAGAAAGGACAGGTTGCTTGTAGAGACTATCCACATTCAAGACACCTCTGCCTGAAATTTCCTTTCGAGACGACACCCCATGAGAGCTACTGTGAGCTGTGCTACTGCTATGTTTGCGATTCTGCCGCTCCATGCATGTTGTGGAAACTATCACATTGCCACGCCGCTGCGCACATTGGTGACTGGAAGTGCAAAAGGATGTTGATGAAGCAGCAAGCCGCGGTGAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

182

Amino Acids

20.06

Weight (kDa)

6.44

Isoelectric Point (pI)

64.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 198
Acc16I TGCGCA 1 cut(s) 483
AccBSI CCGCTC 1 cut(s) 440
AccII CGCG 4 cut(s) 58, 60, 119, 533
AciI CCGC 6 cut(s) 117, 119, 438, 477, 531, 533
AcsI RAATTY 1 cut(s) 368
AcyI GRCGYC 2 cut(s) 50, 195
AfiI CCNNNNNNNGG 1 cut(s) 98
AgsI TTSAA 1 cut(s) 351
AleI CACNNNNGTG 1 cut(s) 489
AluBI AGCT 2 cut(s) 399, 409
AluI AGCT 2 cut(s) 399, 409
Alw26I GTCTC 2 cut(s) 330, 374
AoxI GGCC 1 cut(s) 100
ApeKI GCWGC 2 cut(s) 479, 523
ApoI RAATTY 1 cut(s) 368
ArsI GACNNNNNNTTYG 2 cut(s) 156, 188
AseI ATTAAT 1 cut(s) 33
AspLEI GCGC 2 cut(s) 60, 484
AspS9I GGNCC 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 503
BbsI GAAGAC 2 cut(s) 92, 102
BbvI GCAGC 2 cut(s) 466, 535
BcoDI GTCTC 2 cut(s) 330, 374
BisI GCNGC 5 cut(s) 438, 477, 480, 524, 531
BlsI GCNGC 5 cut(s) 439, 478, 481, 525, 532
BmgT120I GGNCC 1 cut(s) 101
BoxI GACNNNNGTC 1 cut(s) 135
BpiI GAAGAC 2 cut(s) 92, 102
Bsa29I ATCGAT 1 cut(s) 18
BsaHI GRCGYC 2 cut(s) 50, 195
BsaJI CCNNGG 2 cut(s) 117, 531
Bsc4I CCNNNNNNNGG 1 cut(s) 98
Bse118I RCCGGY 1 cut(s) 235
Bse1I ACTGG 1 cut(s) 500
Bse3DI GCAATG 1 cut(s) 466
BseCI ATCGAT 1 cut(s) 18
BseDI CCNNGG 2 cut(s) 117, 531
BseGI GGATG 1 cut(s) 516
BseLI CCNNNNNNNGG 1 cut(s) 98
BseMI GCAATG 1 cut(s) 466
BseMII CTCAG 1 cut(s) 303
BseNI ACTGG 1 cut(s) 500
BseXI GCAGC 2 cut(s) 466, 535
Bsh1236I CGCG 4 cut(s) 58, 60, 119, 533
BshFI GGCC 1 cut(s) 102
BshVI ATCGAT 1 cut(s) 18
BsiSI CCGG 1 cut(s) 236
BslI CCNNNNNNNGG 1 cut(s) 98
BsmAI GTCTC 2 cut(s) 330, 374
BsmBI CGTCTC 1 cut(s) 374
BsnI GGCC 1 cut(s) 102
BspACI CCGC 6 cut(s) 117, 119, 438, 477, 531, 533
BspANI GGCC 1 cut(s) 102
BspCNI CTCAG 1 cut(s) 304
BspDI ATCGAT 1 cut(s) 18
BspFNI CGCG 4 cut(s) 58, 60, 119, 533
BsrBI CCGCTC 1 cut(s) 440
BsrDI GCAATG 1 cut(s) 466
BsrFI RCCGGY 1 cut(s) 235
BsrI ACTGG 1 cut(s) 500
BssAI RCCGGY 1 cut(s) 235
BssECI CCNNGG 2 cut(s) 117, 531
BssNI GRCGYC 2 cut(s) 50, 195
Bst4CI ACNGT 1 cut(s) 404
BstACI GRCGYC 2 cut(s) 50, 195
BstC8I GCNNGC 1 cut(s) 528
BstDEI CTNAG 1 cut(s) 312
BstDSI CCRYGG 2 cut(s) 117, 531
BstF5I GGATG 1 cut(s) 516
BstFNI CGCG 4 cut(s) 58, 60, 119, 533
BstHHI GCGC 2 cut(s) 60, 484
BstMAI GTCTC 2 cut(s) 330, 374
BstMWI GCNNNNNNNGC 1 cut(s) 426
BstNSI RCATGY 1 cut(s) 451
BstPAI GACNNNNGTC 1 cut(s) 135
BstUI CGCG 4 cut(s) 58, 60, 119, 533
BstV1I GCAGC 2 cut(s) 466, 535
BstV2I GAAGAC 2 cut(s) 92, 102
Bsu15I ATCGAT 1 cut(s) 18
BsuRI GGCC 1 cut(s) 102
BsuTUI ATCGAT 1 cut(s) 18
BtgI CCRYGG 2 cut(s) 117, 531
BtsCI GGATG 1 cut(s) 516
Cac8I GCNNGC 1 cut(s) 528
CfoI GCGC 2 cut(s) 60, 484
Cfr10I RCCGGY 1 cut(s) 235
Cfr13I GGNCC 1 cut(s) 101
Cfr42I CCGCGG 2 cut(s) 120, 534
ClaI ATCGAT 1 cut(s) 18
CseI GACGC 1 cut(s) 58
CviAII CATG 3 cut(s) 392, 444, 448
CviJI RGCY 5 cut(s) 102, 235, 399, 409, 530
CviKI_1 RGCY 5 cut(s) 102, 235, 399, 409, 530
DdeI CTNAG 1 cut(s) 312
Eco32I GATATC 1 cut(s) 298
EcoRV GATATC 1 cut(s) 298
EcoT22I ATGCAT 1 cut(s) 449
Esp3I CGTCTC 1 cut(s) 374
FaeI CATG 3 cut(s) 395, 447, 451
FaiI YATR 4 cut(s) 393, 423, 445, 449
FatI CATG 3 cut(s) 391, 443, 447
Fnu4HI GCNGC 5 cut(s) 438, 477, 480, 524, 531
FokI GGATG 1 cut(s) 523
Fsp4HI GCNGC 5 cut(s) 438, 477, 480, 524, 531
FspI TGCGCA 1 cut(s) 483
GlaI GCGC 2 cut(s) 59, 483
GluI GCNGC 5 cut(s) 438, 477, 480, 524, 531
HaeIII GGCC 1 cut(s) 102
HapII CCGG 1 cut(s) 236
HgaI GACGC 1 cut(s) 58
HhaI GCGC 2 cut(s) 60, 484
Hin1I GRCGYC 2 cut(s) 50, 195
Hin1II CATG 3 cut(s) 395, 447, 451
Hin6I GCGC 2 cut(s) 58, 482
HinP1I GCGC 2 cut(s) 58, 482
HinfI GANTC 4 cut(s) 15, 88, 136, 431
HpaII CCGG 1 cut(s) 236
HphI GGTGA 1 cut(s) 503
Hpy188I TCNGA 1 cut(s) 14
Hpy188III TCNNGA 3 cut(s) 293, 351, 379
Hpy99I CGWCG 3 cut(s) 46, 109, 200
HpyAV CCTTC 1 cut(s) 63
HpyCH4III ACNGT 1 cut(s) 404
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 3 cut(s) 241, 447, 504
HpyF10VI GCNNNNNNNGC 1 cut(s) 426
HpyF3I CTNAG 1 cut(s) 312
HpySE526I ACGT 1 cut(s) 195
Hsp92I GRCGYC 2 cut(s) 50, 195
Hsp92II CATG 3 cut(s) 395, 447, 451
HspAI GCGC 2 cut(s) 58, 482
KspI CCGCGG 2 cut(s) 120, 534
LmnI GCTCC 1 cut(s) 445
LpnPI CCDG 7 cut(s) 107, 130, 249, 270, 308, 377, 481
Lsp1109I GCAGC 2 cut(s) 466, 535
MaeII ACGT 1 cut(s) 195
MaeIII GTNAC 3 cut(s) 73, 278, 491
MbiI CCGCTC 1 cut(s) 440
MboII GAAGA 3 cut(s) 97, 102, 105
MluCI AATT 1 cut(s) 368
MlyI GAGTC 2 cut(s) 82, 145
MmeI TCCRAC 1 cut(s) 240
MnlI CCTC 6 cut(s) 39, 115, 121, 184, 193, 368
Mph1103I ATGCAT 1 cut(s) 449
MseI TTAA 1 cut(s) 33
MslI CAYNNNNRTG 1 cut(s) 489
MspA1I CMGCKG 3 cut(s) 119, 479, 533
MspI CCGG 1 cut(s) 236
MvnI CGCG 4 cut(s) 58, 60, 119, 533
MwoI GCNNNNNNNGC 1 cut(s) 426
NlaIII CATG 3 cut(s) 395, 447, 451
NmuCI GTSAC 3 cut(s) 73, 278, 491
NsbI TGCGCA 1 cut(s) 483
NsiI ATGCAT 1 cut(s) 449
NspI RCATGY 1 cut(s) 451
OliI CACNNNNGTG 1 cut(s) 489
PfeI GAWTC 2 cut(s) 15, 431
PkrI GCNGC 5 cut(s) 439, 478, 481, 525, 532
PleI GAGTC 2 cut(s) 82, 144
PpsI GAGTC 2 cut(s) 82, 144
PshAI GACNNNNGTC 1 cut(s) 135
PshBI ATTAAT 1 cut(s) 33
PspPI GGNCC 1 cut(s) 101
RseI CAYNNNNRTG 1 cut(s) 489
SacII CCGCGG 2 cut(s) 120, 534
SaqAI TTAA 1 cut(s) 33
SatI GCNGC 5 cut(s) 438, 477, 480, 524, 531
Sau96I GGNCC 1 cut(s) 101
SchI GAGTC 2 cut(s) 82, 145
SetI ASST 6 cut(s) 174, 198, 327, 360, 401, 411
Sfr303I CCGCGG 2 cut(s) 120, 534
SgrBI CCGCGG 2 cut(s) 120, 534
SmiMI CAYNNNNRTG 1 cut(s) 489
Sse9I AATT 1 cut(s) 368
SsiI CCGC 6 cut(s) 117, 119, 438, 477, 531, 533
TaaI ACNGT 1 cut(s) 404
TaiI ACGT 1 cut(s) 198
TaqI TCGA 6 cut(s) 18, 44, 174, 198, 222, 378
TasI AATT 1 cut(s) 368
TauI GCSGC 3 cut(s) 440, 479, 533
TfiI GAWTC 2 cut(s) 15, 431
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TseFI GTSAC 3 cut(s) 73, 278, 491
TseI GCWGC 2 cut(s) 479, 523
Tsp45I GTSAC 3 cut(s) 73, 278, 491
TspDTI ATGAA 2 cut(s) 199, 533
TspGWI ACGGA 1 cut(s) 244
VspI ATTAAT 1 cut(s) 33
XapI RAATTY 1 cut(s) 368
XceI RCATGY 1 cut(s) 451
XcmI CCANNNNNNNNNTGG 1 cut(s) 450
ZraI GACGTC 1 cut(s) 196
Zsp2I ATGCAT 1 cut(s) 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.