Rh1CG433800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0006092
Physical Location & Seq
Forward (+)
68949046 .. 68950109
1064 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG433800.1

Sequence Viewer

Length: 615 bp
ATGCCCCCAAAACGCAAAAGCCAACCCCCACAGAGAAGCAGCGAGAGATTGAAGATCAAAATGAGCAACACCAATGACAAGTCTCCGATCGATTTATCCACCCCAACTCCTCCGCCGGAGAAGAAGAACAAGCGGGCCGTCACTAACAAGAAGCCCACTTCGTCCGGCCCAGAAGAACAAGACGACGAGTCTCCGATCAGGCACCACCTCATTGTGACCAAGGAGGAAGATGTGAAGCATTTTGAGGAGCTCGATGACTGCTTCATTCTGGGGTTCGACCCAGTAGAGTCGATTGAGATGAAGAAGTTGTCTGTGGCGGATAAGGCTGCTGGGTCGCCGGAGATCGCCGTTGTTGCCGAGAAAGGCCAGGTGGCTTGCAGAGATTATCCACATCCGAGGCATCTCTGCGTTAAATTTCTGTTTGAGACAACACCGCATGAGACACATTGTGAGCTGTGTTACTGCTATGTGTGCGATACAGCAGCTCCGTGCAAGTCATGGTCATCTTCTAGTAACAATGCACTGCTATCACATTGTGATGCTTATGACAACAGTGGTGTTTGGAAGCGGGAAAGGACATTGAGGAAACAGCTATCAGCTGTGTTTAAGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

204

Amino Acids

23.05

Weight (kDa)

7.58

Isoelectric Point (pI)

62.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 201
AciI CCGC 5 cut(s) 113, 133, 317, 434, 568
AcsI RAATTY 1 cut(s) 413
AdeI CACNNNGTG 2 cut(s) 449, 536
AgsI TTSAA 1 cut(s) 52
AhdI GACNNNNNGTC 1 cut(s) 187
AjnI CCWGG 1 cut(s) 366
AluBI AGCT 5 cut(s) 250, 454, 485, 592, 599
AluI AGCT 5 cut(s) 250, 454, 485, 592, 599
Alw21I GWGCWC 1 cut(s) 252
Alw26I GTCTC 4 cut(s) 87, 195, 419, 434
AoxI GGCC 3 cut(s) 135, 166, 364
ApeKI GCWGC 3 cut(s) 39, 326, 482
ApoI RAATTY 1 cut(s) 413
AspS9I GGNCC 2 cut(s) 135, 167
BanI GGYRCC 1 cut(s) 201
BanII GRGCYC 1 cut(s) 252
Bbv12I GWGCWC 1 cut(s) 252
BbvI GCAGC 3 cut(s) 51, 313, 494
BceAI ACGGC 2 cut(s) 122, 332
BciT130I CCWGG 1 cut(s) 368
BcoDI GTCTC 4 cut(s) 87, 195, 419, 434
BfaI CTAG 1 cut(s) 510
BisI GCNGC 3 cut(s) 40, 327, 483
BlsI GCNGC 3 cut(s) 41, 328, 484
Bme1390I CCNGG 1 cut(s) 368
BmeRI GACNNNNNGTC 1 cut(s) 187
BmgT120I GGNCC 2 cut(s) 135, 167
BmiI GGNNCC 1 cut(s) 203
BmrFI CCNGG 1 cut(s) 368
BmrI ACTGGG 1 cut(s) 275
BmsI GCATC 2 cut(s) 409, 529
BmuI ACTGGG 1 cut(s) 275
Bsa29I ATCGAT 1 cut(s) 90
BsaJI CCNNGG 2 cut(s) 219, 395
BsaXI ACNNNNNCTCC 4 cut(s) 91, 121, 469, 499
Bse1I ACTGG 1 cut(s) 281
BseBI CCWGG 1 cut(s) 368
BseCI ATCGAT 1 cut(s) 90
BseDI CCNNGG 2 cut(s) 219, 395
BseGI GGATG 1 cut(s) 391
BseNI ACTGG 1 cut(s) 281
BseRI GAGGAG 2 cut(s) 99, 260
BseXI GCAGC 3 cut(s) 51, 313, 494
BseYI CCCAGC 1 cut(s) 329
Bsh1285I CGRYCG 1 cut(s) 90
BshFI GGCC 3 cut(s) 137, 168, 366
BshNI GGYRCC 1 cut(s) 201
BshVI ATCGAT 1 cut(s) 90
BsiEI CGRYCG 1 cut(s) 90
BsiHKAI GWGCWC 1 cut(s) 252
BsiSI CCGG 3 cut(s) 116, 165, 338
BsmAI GTCTC 4 cut(s) 87, 195, 419, 434
BsnI GGCC 3 cut(s) 137, 168, 366
Bsp1286I GDGCHC 1 cut(s) 252
Bsp143I GATC 4 cut(s) 54, 87, 195, 342
BspACI CCGC 5 cut(s) 113, 133, 317, 434, 568
BspANI GGCC 3 cut(s) 137, 168, 366
BspDI ATCGAT 1 cut(s) 90
BspLI GGNNCC 1 cut(s) 203
BspT107I GGYRCC 1 cut(s) 201
BsrI ACTGG 1 cut(s) 281
BssECI CCNNGG 2 cut(s) 219, 395
BssMI GATC 4 cut(s) 54, 87, 195, 342
BssT1I CCWWGG 1 cut(s) 219
Bst2UI CCWGG 1 cut(s) 368
Bst4CI ACNGT 1 cut(s) 554
BstC8I GCNNGC 2 cut(s) 135, 376
BstF5I GGATG 1 cut(s) 391
BstKTI GATC 4 cut(s) 57, 90, 198, 345
BstMAI GTCTC 4 cut(s) 87, 195, 419, 434
BstMBI GATC 4 cut(s) 54, 87, 195, 342
BstMCI CGRYCG 1 cut(s) 90
BstMWI GCNNNNNNNGC 3 cut(s) 323, 353, 471
BstNI CCWGG 1 cut(s) 368
BstSCI CCNGG 1 cut(s) 366
BstV1I GCAGC 3 cut(s) 51, 313, 494
Bsu15I ATCGAT 1 cut(s) 90
BsuRI GGCC 3 cut(s) 137, 168, 366
BsuTUI ATCGAT 1 cut(s) 90
BtsCI GGATG 1 cut(s) 391
BtsI GCAGTG 1 cut(s) 521
BtsIMutI CAGTG 2 cut(s) 521, 559
Cac8I GCNNGC 2 cut(s) 135, 376
Cfr13I GGNCC 2 cut(s) 135, 167
ClaI ATCGAT 1 cut(s) 90
CviAII CATG 2 cut(s) 437, 498
DpnI GATC 4 cut(s) 56, 89, 197, 344
DpnII GATC 4 cut(s) 54, 87, 195, 342
DraIII CACNNNGTG 2 cut(s) 449, 536
DriI GACNNNNNGTC 1 cut(s) 187
Eam1105I GACNNNNNGTC 1 cut(s) 187
EciI GGCGGA 2 cut(s) 102, 332
Ecl136II GAGCTC 1 cut(s) 250
Eco130I CCWWGG 1 cut(s) 219
Eco24I GRGCYC 1 cut(s) 252
Eco53kI GAGCTC 1 cut(s) 250
EcoICRI GAGCTC 1 cut(s) 250
EcoRII CCWGG 1 cut(s) 366
EcoT14I CCWWGG 1 cut(s) 219
EcoT38I GRGCYC 1 cut(s) 252
ErhI CCWWGG 1 cut(s) 219
FaeI CATG 2 cut(s) 440, 501
FaiI YATR 4 cut(s) 438, 468, 499, 546
FatI CATG 2 cut(s) 436, 497
FauI CCCGC 2 cut(s) 126, 561
Fnu4HI GCNGC 3 cut(s) 40, 327, 483
FokI GGATG 1 cut(s) 378
FriOI GRGCYC 1 cut(s) 252
Fsp4HI GCNGC 3 cut(s) 40, 327, 483
FspBI CTAG 1 cut(s) 510
GluI GCNGC 3 cut(s) 40, 327, 483
GsaI CCCAGC 1 cut(s) 333
HaeIII GGCC 3 cut(s) 137, 168, 366
HapII CCGG 3 cut(s) 116, 165, 338
Hin1II CATG 2 cut(s) 440, 501
HinfI GANTC 2 cut(s) 188, 287
HpaII CCGG 3 cut(s) 116, 165, 338
Hpy188I TCNGA 3 cut(s) 87, 195, 396
Hpy99I CGWCG 1 cut(s) 188
HpyCH4III ACNGT 1 cut(s) 554
HpyCH4V TGCA 3 cut(s) 378, 492, 521
HpyF10VI GCNNNNNNNGC 3 cut(s) 323, 353, 471
Hsp92II CATG 2 cut(s) 440, 501
Kzo9I GATC 4 cut(s) 54, 87, 195, 342
LmnI GCTCC 2 cut(s) 247, 490
Lsp1109I GCAGC 3 cut(s) 51, 313, 494
LweI GCATC 2 cut(s) 409, 529
MaeI CTAG 1 cut(s) 510
MaeIII GTNAC 4 cut(s) 139, 214, 458, 512
MalI GATC 4 cut(s) 56, 89, 197, 344
MboI GATC 4 cut(s) 54, 87, 195, 342
MboII GAAGA 7 cut(s) 64, 133, 136, 185, 239, 313, 498
MhlI GDGCHC 1 cut(s) 252
MluCI AATT 1 cut(s) 413
MlyI GAGTC 2 cut(s) 197, 296
MnlI CCTC 6 cut(s) 120, 217, 218, 238, 390, 576
MseI TTAA 2 cut(s) 411, 606
MslI CAYNNNNRTG 1 cut(s) 537
MspA1I CMGCKG 1 cut(s) 599
MspI CCGG 3 cut(s) 116, 165, 338
MspR9I CCNGG 1 cut(s) 368
MvaI CCWGG 1 cut(s) 368
MwoI GCNNNNNNNGC 3 cut(s) 323, 353, 471
NdeII GATC 4 cut(s) 54, 87, 195, 342
NlaIII CATG 2 cut(s) 440, 501
NlaIV GGNNCC 1 cut(s) 203
NmeAIII GCCGAG 1 cut(s) 382
NmuCI GTSAC 2 cut(s) 139, 214
PkrI GCNGC 3 cut(s) 41, 328, 484
Ple19I CGATCG 1 cut(s) 90
PleI GAGTC 2 cut(s) 196, 295
PpsI GAGTC 2 cut(s) 196, 295
Psp124BI GAGCTC 1 cut(s) 252
Psp6I CCWGG 1 cut(s) 366
PspFI CCCAGC 1 cut(s) 329
PspGI CCWGG 1 cut(s) 366
PspN4I GGNNCC 1 cut(s) 203
PspPI GGNCC 2 cut(s) 135, 167
PvuI CGATCG 1 cut(s) 90
PvuII CAGCTG 1 cut(s) 599
RseI CAYNNNNRTG 1 cut(s) 537
SacI GAGCTC 1 cut(s) 252
SaqAI TTAA 2 cut(s) 411, 606
SatI GCNGC 3 cut(s) 40, 327, 483
Sau3AI GATC 4 cut(s) 54, 87, 195, 342
Sau96I GGNCC 2 cut(s) 135, 167
SchI GAGTC 2 cut(s) 197, 296
ScrFI CCNGG 1 cut(s) 368
SduI GDGCHC 1 cut(s) 252
SetI ASST 7 cut(s) 210, 252, 372, 456, 487, 594, 601
SfaNI GCATC 2 cut(s) 409, 529
SmiMI CAYNNNNRTG 1 cut(s) 537
Sse9I AATT 1 cut(s) 413
SsiI CCGC 5 cut(s) 113, 133, 317, 434, 568
SspMI CTAG 1 cut(s) 510
SstI GAGCTC 1 cut(s) 252
StyD4I CCNGG 1 cut(s) 366
StyI CCWWGG 1 cut(s) 219
TaaI ACNGT 1 cut(s) 554
TaqI TCGA 4 cut(s) 90, 252, 276, 290
TasI AATT 1 cut(s) 413
Tru1I TTAA 2 cut(s) 411, 606
Tru9I TTAA 2 cut(s) 411, 606
TscAI CASTG 2 cut(s) 528, 559
TseFI GTSAC 2 cut(s) 139, 214
TseI GCWGC 3 cut(s) 39, 326, 482
Tsp45I GTSAC 2 cut(s) 139, 214
TspDTI ATGAA 2 cut(s) 253, 314
TspGWI ACGGA 1 cut(s) 477
TspRI CASTG 2 cut(s) 528, 559
XapI RAATTY 1 cut(s) 413
XspI CTAG 1 cut(s) 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.