Rmu_sc0000634.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000634.1
OG0006092
Physical Location & Seq
Forward (+)
2645 .. 3653
1009 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000634.1_g000001.1.cds

Sequence Viewer

Length: 555 bp
atgagcaacaccaatgacaagtctccgatcgatttatccaccccaactcctccgccggagaagaagaacaagccggccgtcactaacaagaagcccacttcgtccggcccagaagaacaagacgacgagtctcccatcaggcaccacctcattgtgaccaaagaggaagatgtgaagcgttttgaggagctcgatgactgcttcattctgggtttcgacccagttgagtcgattgagatgaagaagttgtctgtggcggataaggctgctgggtcgccggagatcgccgttgttgccgagaaaggccaggtggcttgcagagattatccacatccgaggcatctgtgcgttaaattaccgtttgagacaacaccgcatgagacacattgtgagctgtgttactgctatgtgtgcgatacagcagctccgtgcaagtcatggtcatcttcttgtaacaatgcactgttatcacattgtgatgcttatgacaacagtggtgtttggaagcgggaaaggacattgaggaaacagttatcacctgtgtttaagcagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

184

Amino Acids

20.63

Weight (kDa)

5.81

Isoelectric Point (pI)

61.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 141
AciI CCGC 4 cut(s) 53, 257, 374, 508
AcoI YGGCCR 1 cut(s) 75
AdeI CACNNNGTG 2 cut(s) 389, 476
AhdI GACNNNNNGTC 1 cut(s) 127
AjnI CCWGG 1 cut(s) 306
AluBI AGCT 3 cut(s) 190, 394, 425
AluI AGCT 3 cut(s) 190, 394, 425
Alw21I GWGCWC 1 cut(s) 192
Alw26I GTCTC 4 cut(s) 27, 135, 359, 374
AoxI GGCC 3 cut(s) 75, 106, 304
ApeKI GCWGC 2 cut(s) 266, 422
AspS9I GGNCC 1 cut(s) 107
AsuHPI GGTGA 1 cut(s) 528
BanI GGYRCC 1 cut(s) 141
BanII GRGCYC 1 cut(s) 192
Bbv12I GWGCWC 1 cut(s) 192
BbvI GCAGC 2 cut(s) 253, 434
BccI CCATC 1 cut(s) 143
BceAI ACGGC 2 cut(s) 62, 272
BciT130I CCWGG 1 cut(s) 308
BcoDI GTCTC 4 cut(s) 27, 135, 359, 374
BisI GCNGC 2 cut(s) 267, 423
BlsI GCNGC 2 cut(s) 268, 424
Bme1390I CCNGG 1 cut(s) 308
BmeRI GACNNNNNGTC 1 cut(s) 127
BmgT120I GGNCC 1 cut(s) 107
BmiI GGNNCC 1 cut(s) 143
BmrFI CCNGG 1 cut(s) 308
BmrI ACTGGG 1 cut(s) 215
BmsI GCATC 2 cut(s) 349, 469
BmuI ACTGGG 1 cut(s) 215
Bsa29I ATCGAT 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 335
BsaXI ACNNNNNCTCC 4 cut(s) 31, 61, 409, 439
Bse118I RCCGGY 1 cut(s) 73
Bse1I ACTGG 1 cut(s) 221
BseBI CCWGG 1 cut(s) 308
BseCI ATCGAT 1 cut(s) 30
BseDI CCNNGG 1 cut(s) 335
BseGI GGATG 1 cut(s) 331
BseNI ACTGG 1 cut(s) 221
BseRI GAGGAG 2 cut(s) 39, 200
BseX3I CGGCCG 1 cut(s) 75
BseXI GCAGC 2 cut(s) 253, 434
BseYI CCCAGC 1 cut(s) 269
Bsh1285I CGRYCG 2 cut(s) 30, 78
BshFI GGCC 3 cut(s) 77, 108, 306
BshNI GGYRCC 1 cut(s) 141
BshVI ATCGAT 1 cut(s) 30
BsiEI CGRYCG 2 cut(s) 30, 78
BsiHKAI GWGCWC 1 cut(s) 192
BsiSI CCGG 4 cut(s) 56, 74, 105, 278
BsmAI GTCTC 4 cut(s) 27, 135, 359, 374
BsnI GGCC 3 cut(s) 77, 108, 306
Bsp1286I GDGCHC 1 cut(s) 192
Bsp143I GATC 2 cut(s) 27, 282
BspACI CCGC 4 cut(s) 53, 257, 374, 508
BspANI GGCC 3 cut(s) 77, 108, 306
BspDI ATCGAT 1 cut(s) 30
BspLI GGNNCC 1 cut(s) 143
BspT107I GGYRCC 1 cut(s) 141
BsrFI RCCGGY 1 cut(s) 73
BsrI ACTGG 1 cut(s) 221
BssAI RCCGGY 1 cut(s) 73
BssECI CCNNGG 1 cut(s) 335
BssMI GATC 2 cut(s) 27, 282
Bst2UI CCWGG 1 cut(s) 308
Bst4CI ACNGT 4 cut(s) 360, 465, 494, 531
BstC8I GCNNGC 2 cut(s) 75, 316
BstF5I GGATG 1 cut(s) 331
BstKTI GATC 2 cut(s) 30, 285
BstMAI GTCTC 4 cut(s) 27, 135, 359, 374
BstMBI GATC 2 cut(s) 27, 282
BstMCI CGRYCG 2 cut(s) 30, 78
BstMWI GCNNNNNNNGC 3 cut(s) 263, 293, 411
BstNI CCWGG 1 cut(s) 308
BstSCI CCNGG 1 cut(s) 306
BstV1I GCAGC 2 cut(s) 253, 434
BstZI CGGCCG 1 cut(s) 75
Bsu15I ATCGAT 1 cut(s) 30
BsuRI GGCC 3 cut(s) 77, 108, 306
BsuTUI ATCGAT 1 cut(s) 30
BtsCI GGATG 1 cut(s) 331
BtsIMutI CAGTG 2 cut(s) 461, 499
Cac8I GCNNGC 2 cut(s) 75, 316
Cfr10I RCCGGY 1 cut(s) 73
Cfr13I GGNCC 1 cut(s) 107
ClaI ATCGAT 1 cut(s) 30
CviAII CATG 2 cut(s) 377, 438
DpnI GATC 2 cut(s) 29, 284
DpnII GATC 2 cut(s) 27, 282
DraIII CACNNNGTG 2 cut(s) 389, 476
DriI GACNNNNNGTC 1 cut(s) 127
EaeI YGGCCR 1 cut(s) 75
EagI CGGCCG 1 cut(s) 75
Eam1105I GACNNNNNGTC 1 cut(s) 127
EciI GGCGGA 2 cut(s) 42, 272
Ecl136II GAGCTC 1 cut(s) 190
EclXI CGGCCG 1 cut(s) 75
Eco24I GRGCYC 1 cut(s) 192
Eco52I CGGCCG 1 cut(s) 75
Eco53kI GAGCTC 1 cut(s) 190
EcoICRI GAGCTC 1 cut(s) 190
EcoRII CCWGG 1 cut(s) 306
EcoT38I GRGCYC 1 cut(s) 192
FaeI CATG 2 cut(s) 380, 441
FaiI YATR 4 cut(s) 378, 408, 439, 486
FatI CATG 2 cut(s) 376, 437
FauI CCCGC 1 cut(s) 501
Fnu4HI GCNGC 2 cut(s) 267, 423
FokI GGATG 1 cut(s) 318
FriOI GRGCYC 1 cut(s) 192
Fsp4HI GCNGC 2 cut(s) 267, 423
GluI GCNGC 2 cut(s) 267, 423
GsaI CCCAGC 1 cut(s) 273
HaeIII GGCC 3 cut(s) 77, 108, 306
HapII CCGG 4 cut(s) 56, 74, 105, 278
Hin1II CATG 2 cut(s) 380, 441
HinfI GANTC 2 cut(s) 128, 227
HpaII CCGG 4 cut(s) 56, 74, 105, 278
HphI GGTGA 1 cut(s) 528
Hpy188I TCNGA 2 cut(s) 27, 336
Hpy99I CGWCG 1 cut(s) 128
HpyCH4III ACNGT 4 cut(s) 360, 465, 494, 531
HpyCH4V TGCA 3 cut(s) 318, 432, 461
HpyF10VI GCNNNNNNNGC 3 cut(s) 263, 293, 411
Hsp92II CATG 2 cut(s) 380, 441
KroI GCCGGC 1 cut(s) 73
KroNI GCCGGC 1 cut(s) 75
Kzo9I GATC 2 cut(s) 27, 282
LmnI GCTCC 2 cut(s) 187, 430
Lsp1109I GCAGC 2 cut(s) 253, 434
LweI GCATC 2 cut(s) 349, 469
MaeIII GTNAC 4 cut(s) 79, 154, 398, 452
MalI GATC 2 cut(s) 29, 284
MboI GATC 2 cut(s) 27, 282
MboII GAAGA 6 cut(s) 73, 76, 125, 179, 253, 438
MhlI GDGCHC 1 cut(s) 192
MluCI AATT 1 cut(s) 353
MlyI GAGTC 2 cut(s) 137, 236
MnlI CCTC 6 cut(s) 60, 157, 158, 178, 330, 516
MroNI GCCGGC 1 cut(s) 73
MseI TTAA 2 cut(s) 351, 546
MslI CAYNNNNRTG 1 cut(s) 477
MspI CCGG 4 cut(s) 56, 74, 105, 278
MspR9I CCNGG 1 cut(s) 308
MvaI CCWGG 1 cut(s) 308
MwoI GCNNNNNNNGC 3 cut(s) 263, 293, 411
NaeI GCCGGC 1 cut(s) 75
NdeII GATC 2 cut(s) 27, 282
NgoMIV GCCGGC 1 cut(s) 73
NlaIII CATG 2 cut(s) 380, 441
NlaIV GGNNCC 1 cut(s) 143
NmeAIII GCCGAG 1 cut(s) 322
NmuCI GTSAC 2 cut(s) 79, 154
PdiI GCCGGC 1 cut(s) 75
PkrI GCNGC 2 cut(s) 268, 424
Ple19I CGATCG 1 cut(s) 30
PleI GAGTC 2 cut(s) 136, 235
PpsI GAGTC 2 cut(s) 136, 235
Psp124BI GAGCTC 1 cut(s) 192
Psp6I CCWGG 1 cut(s) 306
PspFI CCCAGC 1 cut(s) 269
PspGI CCWGG 1 cut(s) 306
PspN4I GGNNCC 1 cut(s) 143
PspPI GGNCC 1 cut(s) 107
PvuI CGATCG 1 cut(s) 30
RseI CAYNNNNRTG 1 cut(s) 477
SacI GAGCTC 1 cut(s) 192
SaqAI TTAA 2 cut(s) 351, 546
SatI GCNGC 2 cut(s) 267, 423
Sau3AI GATC 2 cut(s) 27, 282
Sau96I GGNCC 1 cut(s) 107
SchI GAGTC 2 cut(s) 137, 236
ScrFI CCNGG 1 cut(s) 308
SduI GDGCHC 1 cut(s) 192
SetI ASST 6 cut(s) 150, 192, 312, 396, 427, 541
SfaNI GCATC 2 cut(s) 349, 469
SmiMI CAYNNNNRTG 1 cut(s) 477
Sse9I AATT 1 cut(s) 353
SsiI CCGC 4 cut(s) 53, 257, 374, 508
SstI GAGCTC 1 cut(s) 192
StyD4I CCNGG 1 cut(s) 306
TaaI ACNGT 4 cut(s) 360, 465, 494, 531
TaqI TCGA 4 cut(s) 30, 192, 216, 230
TasI AATT 1 cut(s) 353
Tru1I TTAA 2 cut(s) 351, 546
Tru9I TTAA 2 cut(s) 351, 546
TscAI CASTG 2 cut(s) 468, 499
TseFI GTSAC 2 cut(s) 79, 154
TseI GCWGC 2 cut(s) 266, 422
Tsp45I GTSAC 2 cut(s) 79, 154
TspDTI ATGAA 2 cut(s) 193, 254
TspGWI ACGGA 1 cut(s) 417
TspRI CASTG 2 cut(s) 468, 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.