Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005292

Physical Location & Seq

Genomic Coordinates Reverse (-)

13864919 .. 13866607

Gene Structure 1689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G27840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGACTTCGAATCAACGTATGTTGTTCTACTCCTGCATTGCGAAAGGAACAGTGATTCTCGCAGAATTCGCTTCAAAGGAAGAGCCAGGAATCGAAGATCTAGCTTTGAGATGCATTGAGAACGTACCTCCACATCATTCGATGATCTCTCACACAGTCCATAAGAGAACCTACGCTTTGATCATCGATGGATTGTTTTCGTATTTCGCGATTTTAGATGAGGTCGTAGCGAAATCGGAGTCTGTATGGCTATTCAATCGATTGAAATCAGCTACAGAGTCTCTAATGGAAGACGGATCTACTGCGGATTCGTTGGATAATCCGACTCAACACTGTCTCCAATCAAAGCTAGATCCAGTTTTCGCTGAGATTGCTGCTATTGGTGGTAATCATAATAAGGATTTGGAATTGGAGTTTGGATCACCGAGGAGTATAGCGAGGGAGATTAAGAGTAATAATCAGAGTTTGGATTCGTCCAAGGGACGAAAAGGCGGTGCGTTGATGCCGCTTTTAGGAAAGCCGTTGAGGGTGTTGAAGAACAAGAAGAGATTGCAGACGGAAGCGAAAAGTGAAGGTCATTGGAATGAGAAGAAGATGGACCTAGGAGGAGGAGGTAAAGGAGTGAGGAATGGTTTGATTCATGATCATCATCATAGACAAAAGGCAAAACAGATATGGAGGAAACATGTTTGGATTGTTTTGATGTTTGATCTCTGTATCTGCCTTGTTCTCTTTGGAATCTGGCTTTGGATTTGTCAAGGGTTTCAATGCATCGATGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

260

Amino Acids

29.2

Weight (kDa)

8.62

Isoelectric Point (pI)

52.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27840 AT5G52990
fragaria_vesca	FvH4_7g31440
malus_domestica	MD01G1217900.v1.1 MD07G1287600.v1.1
prunus_persica	Prupe.2G309300_v2.0.a1
pyrus_communis	pycom01g22800 pycom07g26050
rosa_chinensis	RchiOBHm_Chr1g0359031 RchiOBHm_Chr1g0380501 RchiOBHm_Chr2g0122261
rosa_laevigata	RLG00000026291
rosa_multiflora	Rmu_co8212514.1_g000001 Rmu_sc0001733.1_g000002 Rmu_sc0006267.1_g000010 Rmu_sc0006712.1_g000003 Rmu_sc0021603.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279270
rosa_rugosa	Rorug01G0267400 Rorug01G0421300
rosa_samantha	Rh1AG280600 Rh1AG446400 Rh1BG247600 Rh1BG401600 Rh1CG415900 Rh1DG431800 Rh2BG305100 Rh2CG283500
rosa_wichuraiana	Rw1G038830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	209
AciI	CCGC	3 cut(s)	305, 492, 506
AclWI	GGATC	3 cut(s)	304, 347, 427
AcsI	RAATTY	1 cut(s)	65
AfaI	GTAC	1 cut(s)	126
AfiI	CCNNNNNNNGG	1 cut(s)	512
AflIII	ACRYGT	1 cut(s)	685
AgsI	TTSAA	5 cut(s)	75, 256, 265, 535, 767
AjnI	CCWGG	1 cut(s)	85
AjuI	GAANNNNNNNTTGG	4 cut(s)	399, 431, 730, 762
AluBI	AGCT	3 cut(s)	104, 272, 349
AluI	AGCT	3 cut(s)	104, 272, 349
Alw26I	GTCTC	2 cut(s)	285, 341
AlwI	GGATC	3 cut(s)	304, 347, 427
ApeKI	GCWGC	1 cut(s)	374
ApoI	RAATTY	1 cut(s)	65
ArsI	GACNNNNNNTTYG	2 cut(s)	224, 256
AspA2I	CCTAGG	1 cut(s)	601
AspS9I	GGNCC	1 cut(s)	598
AsuHPI	GGTGA	1 cut(s)	414
AsuII	TTCGAA	1 cut(s)	8
AvaII	GGWCC	1 cut(s)	598
AvrII	CCTAGG	1 cut(s)	601
BbsI	GAAGAC	1 cut(s)	297
BbvI	GCAGC	1 cut(s)	361
BccI	CCATC	3 cut(s)	182, 589, 770
BceAI	ACGGC	1 cut(s)	505
BciT130I	CCWGG	1 cut(s)	87
BclI	TGATCA	2 cut(s)	180, 643
BcoDI	GTCTC	2 cut(s)	285, 341
BfaI	CTAG	3 cut(s)	101, 350, 602
BfmI	CTRYAG	1 cut(s)	273
BglII	AGATCT	1 cut(s)	97
BisI	GCNGC	2 cut(s)	375, 506
BlnI	CCTAGG	1 cut(s)	601
BlsI	GCNGC	2 cut(s)	376, 507
Bme1390I	CCNGG	1 cut(s)	87
Bme18I	GGWCC	1 cut(s)	598
BmgT120I	GGNCC	1 cut(s)	598
BmrFI	CCNGG	1 cut(s)	87
BmsI	GCATC	2 cut(s)	101, 492
BpiI	GAAGAC	1 cut(s)	297
Bpu14I	TTCGAA	1 cut(s)	8
Bsa29I	ATCGAT	3 cut(s)	186, 259, 774
BsaBI	GATNNNNATC	2 cut(s)	265, 648
BsaJI	CCNNGG	3 cut(s)	425, 477, 601
BsaXI	ACNNNNNCTCC	2 cut(s)	321, 351
Bsc4I	CCNNNNNNNGG	1 cut(s)	512
Bse1I	ACTGG	1 cut(s)	356
Bse3DI	GCAATG	1 cut(s)	36
Bse8I	GATNNNNATC	2 cut(s)	265, 648
BseBI	CCWGG	1 cut(s)	87
BseCI	ATCGAT	3 cut(s)	186, 259, 774
BseDI	CCNNGG	3 cut(s)	425, 477, 601
BseJI	GATNNNNATC	2 cut(s)	265, 648
BseLI	CCNNNNNNNGG	1 cut(s)	512
BseMI	GCAATG	1 cut(s)	36
BseMII	CTCAG	1 cut(s)	357
BseNI	ACTGG	1 cut(s)	356
BseRI	GAGGAG	3 cut(s)	442, 621, 624
BseXI	GCAGC	1 cut(s)	361
Bsh1236I	CGCG	1 cut(s)	209
BshVI	ATCGAT	3 cut(s)	186, 259, 774
BslFI	GGGAC	1 cut(s)	495
BslI	CCNNNNNNNGG	1 cut(s)	512
BsmAI	GTCTC	2 cut(s)	285, 341
BsmFI	GGGAC	1 cut(s)	495
Bsp119I	TTCGAA	1 cut(s)	8
Bsp143I	GATC	8 cut(s)	97, 144, 180, 296, 352, 419, 643, 709
Bsp68I	TCGCGA	1 cut(s)	209
BspACI	CCGC	3 cut(s)	305, 492, 506
BspCNI	CTCAG	1 cut(s)	358
BspDI	ATCGAT	3 cut(s)	186, 259, 774
BspFNI	CGCG	1 cut(s)	209
BspHI	TCATGA	1 cut(s)	640
BspPI	GGATC	3 cut(s)	304, 347, 427
BspQI	GCTCTTC	1 cut(s)	75
BspT104I	TTCGAA	1 cut(s)	8
BsrDI	GCAATG	1 cut(s)	36
BsrI	ACTGG	1 cut(s)	356
BssECI	CCNNGG	3 cut(s)	425, 477, 601
BssMI	GATC	8 cut(s)	97, 144, 180, 296, 352, 419, 643, 709
BssT1I	CCWWGG	2 cut(s)	477, 601
Bst2UI	CCWGG	1 cut(s)	87
Bst4CI	ACNGT	3 cut(s)	52, 157, 335
Bst6I	CTCTTC	2 cut(s)	75, 539
BstBI	TTCGAA	1 cut(s)	8
BstDEI	CTNAG	1 cut(s)	366
BstFNI	CGCG	1 cut(s)	209
BstKTI	GATC	8 cut(s)	100, 147, 183, 299, 355, 422, 646, 712
BstMAI	GTCTC	2 cut(s)	285, 341
BstMBI	GATC	8 cut(s)	97, 144, 180, 296, 352, 419, 643, 709
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 371
BstNI	CCWGG	1 cut(s)	87
BstNSI	RCATGY	1 cut(s)	689
BstSCI	CCNGG	1 cut(s)	85
BstSFI	CTRYAG	1 cut(s)	273
BstUI	CGCG	1 cut(s)	209
BstV1I	GCAGC	1 cut(s)	361
BstV2I	GAAGAC	1 cut(s)	297
BstX2I	RGATCY	3 cut(s)	97, 296, 352
BstYI	RGATCY	3 cut(s)	97, 296, 352
Bsu15I	ATCGAT	3 cut(s)	186, 259, 774
BsuTUI	ATCGAT	3 cut(s)	186, 259, 774
BtsIMutI	CAGTG	2 cut(s)	57, 331
BtuMI	TCGCGA	1 cut(s)	209
CciI	TCATGA	1 cut(s)	640
Cfr13I	GGNCC	1 cut(s)	598
ClaI	ATCGAT	3 cut(s)	186, 259, 774
Csp6I	GTAC	1 cut(s)	125
CviAII	CATG	2 cut(s)	641, 686
CviJI	RGCY	7 cut(s)	85, 104, 250, 272, 349, 520, 745
CviKI_1	RGCY	7 cut(s)	85, 104, 250, 272, 349, 520, 745
CviQI	GTAC	1 cut(s)	125
DdeI	CTNAG	1 cut(s)	366
DpnI	GATC	8 cut(s)	99, 146, 182, 298, 354, 421, 645, 711
DpnII	GATC	8 cut(s)	97, 144, 180, 296, 352, 419, 643, 709
Eam1104I	CTCTTC	2 cut(s)	75, 539
EarI	CTCTTC	2 cut(s)	75, 539
Eco130I	CCWWGG	2 cut(s)	477, 601
Eco47I	GGWCC	1 cut(s)	598
EcoRI	GAATTC	1 cut(s)	65
EcoRII	CCWGG	1 cut(s)	85
EcoT14I	CCWWGG	2 cut(s)	477, 601
EcoT22I	ATGCAT	2 cut(s)	116, 773
ErhI	CCWWGG	2 cut(s)	477, 601
FaeI	CATG	2 cut(s)	644, 689
FaiI	YATR	9 cut(s)	20, 162, 247, 393, 434, 642, 654, 676, 687
FaqI	GGGAC	1 cut(s)	495
FatI	CATG	2 cut(s)	640, 685
FbaI	TGATCA	2 cut(s)	180, 643
Fnu4HI	GCNGC	2 cut(s)	375, 506
Fsp4HI	GCNGC	2 cut(s)	375, 506
FspBI	CTAG	3 cut(s)	101, 350, 602
GluI	GCNGC	2 cut(s)	375, 506
Hin1II	CATG	2 cut(s)	644, 689
HphI	GGTGA	1 cut(s)	414
Hpy188I	TCNGA	3 cut(s)	238, 324, 462
Hpy188III	TCNNGA	2 cut(s)	208, 641
HpyAV	CCTTC	1 cut(s)	566
HpyCH4III	ACNGT	3 cut(s)	52, 157, 335
HpyCH4IV	ACGT	2 cut(s)	16, 123
HpyCH4V	TGCA	4 cut(s)	36, 114, 553, 771
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 371
HpyF3I	CTNAG	1 cut(s)	366
HpySE526I	ACGT	2 cut(s)	16, 123
Hsp92II	CATG	2 cut(s)	644, 689
Ksp22I	TGATCA	2 cut(s)	180, 643
Kzo9I	GATC	8 cut(s)	97, 144, 180, 296, 352, 419, 643, 709
LguI	GCTCTTC	1 cut(s)	75
LpnPI	CCDG	5 cut(s)	46, 72, 99, 369, 727
Lsp1109I	GCAGC	1 cut(s)	361
LweI	GCATC	2 cut(s)	101, 492
MaeI	CTAG	3 cut(s)	101, 350, 602
MaeII	ACGT	2 cut(s)	16, 123
MalI	GATC	8 cut(s)	99, 146, 182, 298, 354, 421, 645, 711
MboI	GATC	8 cut(s)	97, 144, 180, 296, 352, 419, 643, 709
MboII	GAAGA	7 cut(s)	92, 107, 302, 547, 556, 601, 604
MflI	RGATCY	3 cut(s)	97, 296, 352
MluCI	AATT	2 cut(s)	65, 407
MlyI	GAGTC	3 cut(s)	248, 287, 319
MmeI	TCCRAC	2 cut(s)	294, 347
Mph1103I	ATGCAT	2 cut(s)	116, 773
MseI	TTAA	1 cut(s)	447
MslI	CAYNNNNRTG	1 cut(s)	582
MspR9I	CCNGG	1 cut(s)	87
MvaI	CCWGG	1 cut(s)	87
MvnI	CGCG	1 cut(s)	209
MwoI	GCNNNNNNNGC	2 cut(s)	68, 371
NdeII	GATC	8 cut(s)	97, 144, 180, 296, 352, 419, 643, 709
NlaIII	CATG	2 cut(s)	644, 689
NruI	TCGCGA	1 cut(s)	209
NsiI	ATGCAT	2 cut(s)	116, 773
NspI	RCATGY	1 cut(s)	689
NspV	TTCGAA	1 cut(s)	8
PagI	TCATGA	1 cut(s)	640
PciI	ACATGT	1 cut(s)	685
PciSI	GCTCTTC	1 cut(s)	75
PcsI	WCGNNNNNNNCGW	1 cut(s)	206
PfeI	GAWTC	7 cut(s)	10, 55, 90, 308, 470, 637, 738
PkrI	GCNGC	2 cut(s)	376, 507
PleI	GAGTC	3 cut(s)	247, 286, 319
PpsI	GAGTC	3 cut(s)	247, 286, 319
PscI	ACATGT	1 cut(s)	685
Psp6I	CCWGG	1 cut(s)	85
PspGI	CCWGG	1 cut(s)	85
PspPI	GGNCC	1 cut(s)	598
PsuI	RGATCY	3 cut(s)	97, 296, 352
RruI	TCGCGA	1 cut(s)	209
RsaI	GTAC	1 cut(s)	126
RsaNI	GTAC	1 cut(s)	125
RseI	CAYNNNNRTG	1 cut(s)	582
SapI	GCTCTTC	1 cut(s)	75
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	2 cut(s)	375, 506
Sau3AI	GATC	8 cut(s)	97, 144, 180, 296, 352, 419, 643, 709
Sau96I	GGNCC	1 cut(s)	598
SchI	GAGTC	3 cut(s)	248, 287, 319
ScrFI	CCNGG	1 cut(s)	87
SfaNI	GCATC	2 cut(s)	101, 492
SfcI	CTRYAG	1 cut(s)	273
SfuI	TTCGAA	1 cut(s)	8
SinI	GGWCC	1 cut(s)	598
SmiMI	CAYNNNNRTG	1 cut(s)	582
Sse9I	AATT	2 cut(s)	65, 407
SsiI	CCGC	3 cut(s)	305, 492, 506
SspMI	CTAG	3 cut(s)	101, 350, 602
StyD4I	CCNGG	1 cut(s)	85
StyI	CCWWGG	2 cut(s)	477, 601
TaaI	ACNGT	3 cut(s)	52, 157, 335
TaiI	ACGT	2 cut(s)	19, 126
TaqI	TCGA	6 cut(s)	8, 93, 140, 186, 259, 774
TasI	AATT	2 cut(s)	65, 407
TauI	GCSGC	1 cut(s)	508
TfiI	GAWTC	7 cut(s)	10, 55, 90, 308, 470, 637, 738
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TscAI	CASTG	2 cut(s)	57, 338
TseI	GCWGC	1 cut(s)	374
TspDTI	ATGAA	1 cut(s)	629
TspGWI	ACGGA	2 cut(s)	309, 572
TspRI	CASTG	2 cut(s)	57, 338
VpaK11BI	GGWCC	1 cut(s)	598
XapI	RAATTY	1 cut(s)	65
XceI	RCATGY	1 cut(s)	689
XmaJI	CCTAGG	1 cut(s)	601
XspI	CTAG	3 cut(s)	101, 350, 602
Zsp2I	ATGCAT	2 cut(s)	116, 773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.