Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005292

Physical Location & Seq

Genomic Coordinates Forward (+)

1934942 .. 1936809

Gene Structure 1868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026291

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGATTTCGAATCCGAATCTGGTGTACTACGCCTGCATTGCCCAGAAGGAAACGATTCTCGGCGAGATTGGGAAGGAGCCCGGAATCGGAGCCCTAGCTCAGAAATGCATTGCGAAAACTCCACTGCACCACTCTATGTACACCCACACCATCAGAAAGCGGACCTATGTGTTCTTGATCGTCGACCCTTTTGTGTTCTTCGGCATTTTCGATCAAGATCTCGATCAGTCCGAGGCGCTTTCGTTCTTGAATCGATTGAGATGCGATTTCGAGAAGGTGAATGGAGTTGGGCCGGTCTTGGATGGAGGAGATTTCGAATCGCATTGTTTTCAAGCTGAGTTTGATTCGATTATGAGGGAGATGATGGCGTCGGAGATGGATTCGGCGGCGTCGCCGCCGGCGAGCCGGAATCTGAGCATGGATTCGAGTAGTAGTAAAGGGAAGAAATTGGTGCTGGCGCCGCTTCTGGGGAACCAGGGGTTGAAGAAGAAGAAGAGATTGTCTGGGGAGGTGAATGGGGAGCTGTGCAAGGATGCGGTGATGAGCACGATGGAGAAGAAGCTGGATGTGGGTGGTGAGGATGGAAGGGATTTCGCAATGCCGGCGGTGAAGAGTGGGGGTTTGCATCCGTGTGAGCGGCAGAAGGCCAAGCAGTCACTGTCTATATTTCCTTTTTCATGGCATGGAGAAGGTATCATAATTTTCAAAAGAGGTAAAGAGCCATTAACCAAATCAAACATCTACATTCAGTGCTTTACTTGGATCGTCAAAGAAAATGAAAAGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

263

Amino Acids

29.11

Weight (kDa)

8.09

Isoelectric Point (pI)

38.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27840 AT5G52990
fragaria_vesca	FvH4_7g31440
malus_domestica	MD01G1217900.v1.1 MD07G1287600.v1.1
prunus_persica	Prupe.2G309300_v2.0.a1
pyrus_communis	pycom01g22800 pycom07g26050
rosa_chinensis	RchiOBHm_Chr1g0359031 RchiOBHm_Chr1g0380501 RchiOBHm_Chr2g0122261
rosa_laevigata	RLG00000026291
rosa_multiflora	Rmu_co8212514.1_g000001 Rmu_sc0001733.1_g000002 Rmu_sc0006267.1_g000010 Rmu_sc0006712.1_g000003 Rmu_sc0021603.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279270
rosa_rugosa	Rorug01G0267400 Rorug01G0421300
rosa_samantha	Rh1AG280600 Rh1AG446400 Rh1BG247600 Rh1BG401600 Rh1CG415900 Rh1DG431800 Rh2BG305100 Rh2CG283500
rosa_wichuraiana	Rw1G038830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	457
AccBSI	CCGCTC	1 cut(s)	637
AccI	GTMKAC	1 cut(s)	183
AciI	CCGC	7 cut(s)	160, 386, 395, 461, 536, 605, 637
AclWI	GGATC	1 cut(s)	770
AcyI	GRCGYC	3 cut(s)	368, 389, 458
AfaI	GTAC	2 cut(s)	26, 140
AfiI	CCNNNNNNNGG	2 cut(s)	86, 467
AgsI	TTSAA	4 cut(s)	250, 332, 484, 706
AjnI	CCWGG	1 cut(s)	474
AluBI	AGCT	4 cut(s)	98, 335, 523, 562
AluI	AGCT	4 cut(s)	98, 335, 523, 562
Alw21I	GWGCWC	1 cut(s)	548
AlwI	GGATC	1 cut(s)	770
AlwNI	CAGNNNCTG	1 cut(s)	658
AoxI	GGCC	2 cut(s)	290, 645
Asp700I	GAANNNNTTC	1 cut(s)	54
AspLEI	GCGC	2 cut(s)	238, 460
AspS9I	GGNCC	2 cut(s)	162, 290
AsuC2I	CCSGG	1 cut(s)	81
AsuHPI	GGTGA	5 cut(s)	289, 523, 550, 587, 619
AsuII	TTCGAA	2 cut(s)	8, 315
AvaII	GGWCC	1 cut(s)	162
BanI	GGYRCC	1 cut(s)	457
BanII	GRGCYC	2 cut(s)	81, 94
Bbv12I	GWGCWC	1 cut(s)	548
BccI	CCATC	6 cut(s)	158, 296, 358, 370, 544, 575
BcgI	CGANNNNNNTGC	2 cut(s)	243, 277
BciT130I	CCWGG	1 cut(s)	476
BcnI	CCSGG	1 cut(s)	81
BfaI	CTAG	1 cut(s)	95
BfoI	RGCGCY	2 cut(s)	239, 461
BglII	AGATCT	1 cut(s)	217
BisI	GCNGC	4 cut(s)	387, 395, 461, 638
BlsI	GCNGC	4 cut(s)	388, 396, 462, 639
Bme1390I	CCNGG	2 cut(s)	81, 476
Bme18I	GGWCC	1 cut(s)	162
BmgT120I	GGNCC	2 cut(s)	162, 290
BmiI	GGNNCC	4 cut(s)	78, 91, 459, 473
BmrFI	CCNGG	2 cut(s)	81, 476
BmsI	GCATC	3 cut(s)	251, 523, 634
Bpu14I	TTCGAA	2 cut(s)	8, 315
BpuMI	CCSGG	1 cut(s)	81
Bsa29I	ATCGAT	1 cut(s)	253
BsaBI	GATNNNNATC	2 cut(s)	216, 222
BsaHI	GRCGYC	3 cut(s)	368, 389, 458
BsaJI	CCNNGG	2 cut(s)	231, 475
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 467
Bse118I	RCCGGY	3 cut(s)	292, 397, 601
Bse3DI	GCAATG	3 cut(s)	36, 108, 603
Bse8I	GATNNNNATC	2 cut(s)	216, 222
BseBI	CCWGG	1 cut(s)	476
BseCI	ATCGAT	1 cut(s)	253
BseDI	CCNNGG	2 cut(s)	231, 475
BseGI	GGATG	5 cut(s)	307, 538, 571, 586, 625
BseJI	GATNNNNATC	2 cut(s)	216, 222
BseLI	CCNNNNNNNGG	2 cut(s)	86, 467
BseMI	GCAATG	3 cut(s)	36, 108, 603
BseMII	CTCAG	3 cut(s)	113, 327, 404
BseRI	GAGGAG	1 cut(s)	321
BsgI	GTGCAG	1 cut(s)	110
BshFI	GGCC	2 cut(s)	292, 647
BshNI	GGYRCC	1 cut(s)	457
BshVI	ATCGAT	1 cut(s)	253
BsiHKAI	GWGCWC	1 cut(s)	548
BsiSI	CCGG	5 cut(s)	81, 293, 398, 406, 602
BslI	CCNNNNNNNGG	2 cut(s)	86, 467
BsnI	GGCC	2 cut(s)	292, 647
Bsp119I	TTCGAA	2 cut(s)	8, 315
Bsp1286I	GDGCHC	3 cut(s)	81, 94, 548
Bsp1407I	TGTACA	1 cut(s)	138
Bsp143I	GATC	5 cut(s)	177, 211, 217, 223, 762
BspACI	CCGC	7 cut(s)	160, 386, 395, 461, 536, 605, 637
BspANI	GGCC	2 cut(s)	292, 647
BspCNI	CTCAG	3 cut(s)	112, 328, 405
BspDI	ATCGAT	1 cut(s)	253
BspLI	GGNNCC	4 cut(s)	78, 91, 459, 473
BspPI	GGATC	1 cut(s)	770
BspT104I	TTCGAA	2 cut(s)	8, 315
BspT107I	GGYRCC	1 cut(s)	457
BsrBI	CCGCTC	1 cut(s)	637
BsrDI	GCAATG	3 cut(s)	36, 108, 603
BsrFI	RCCGGY	3 cut(s)	292, 397, 601
BsrGI	TGTACA	1 cut(s)	138
BssAI	RCCGGY	3 cut(s)	292, 397, 601
BssECI	CCNNGG	2 cut(s)	231, 475
BssMI	GATC	5 cut(s)	177, 211, 217, 223, 762
BssNI	GRCGYC	3 cut(s)	368, 389, 458
Bst2UI	CCWGG	1 cut(s)	476
Bst4CI	ACNGT	1 cut(s)	660
Bst6I	CTCTTC	2 cut(s)	488, 605
BstACI	GRCGYC	3 cut(s)	368, 389, 458
BstAUI	TGTACA	1 cut(s)	138
BstBI	TTCGAA	2 cut(s)	8, 315
BstC8I	GCNNGC	5 cut(s)	34, 399, 403, 456, 603
BstDEI	CTNAG	3 cut(s)	99, 336, 413
BstF5I	GGATG	5 cut(s)	307, 538, 571, 586, 625
BstH2I	RGCGCY	2 cut(s)	239, 461
BstHHI	GCGC	2 cut(s)	238, 460
BstKTI	GATC	5 cut(s)	180, 214, 220, 226, 765
BstMBI	GATC	5 cut(s)	177, 211, 217, 223, 762
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 460, 602
BstNI	CCWGG	1 cut(s)	476
BstSCI	CCNGG	2 cut(s)	79, 474
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
Bsu15I	ATCGAT	1 cut(s)	253
BsuRI	GGCC	2 cut(s)	292, 647
BsuTUI	ATCGAT	1 cut(s)	253
BtsCI	GGATG	5 cut(s)	307, 538, 571, 586, 625
BtsI	GCAGTG	1 cut(s)	122
BtsIMutI	CAGTG	3 cut(s)	122, 656, 755
Cac8I	GCNNGC	5 cut(s)	34, 399, 403, 456, 603
CaiI	CAGNNNCTG	1 cut(s)	658
CfoI	GCGC	2 cut(s)	238, 460
Cfr10I	RCCGGY	3 cut(s)	292, 397, 601
Cfr13I	GGNCC	2 cut(s)	162, 290
ClaI	ATCGAT	1 cut(s)	253
CseI	GACGC	2 cut(s)	357, 378
Csp6I	GTAC	2 cut(s)	25, 139
CviAII	CATG	3 cut(s)	418, 678, 683
CviQI	GTAC	2 cut(s)	25, 139
DdeI	CTNAG	3 cut(s)	99, 336, 413
DinI	GGCGCC	1 cut(s)	459
DpnI	GATC	5 cut(s)	179, 213, 219, 225, 764
DpnII	GATC	5 cut(s)	177, 211, 217, 223, 762
Eam1104I	CTCTTC	2 cut(s)	488, 605
EarI	CTCTTC	2 cut(s)	488, 605
Eco24I	GRGCYC	2 cut(s)	81, 94
Eco47I	GGWCC	1 cut(s)	162
EcoRII	CCWGG	1 cut(s)	474
EcoT22I	ATGCAT	1 cut(s)	110
EcoT38I	GRGCYC	2 cut(s)	81, 94
EgeI	GGCGCC	1 cut(s)	459
EheI	GGCGCC	1 cut(s)	459
FaeI	CATG	3 cut(s)	421, 681, 686
FaiI	YATR	8 cut(s)	137, 168, 353, 419, 665, 679, 684, 698
FatI	CATG	3 cut(s)	417, 677, 682
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	4 cut(s)	387, 395, 461, 638
FokI	GGATG	5 cut(s)	314, 545, 578, 593, 612
FriOI	GRGCYC	2 cut(s)	81, 94
Fsp4HI	GCNGC	4 cut(s)	387, 395, 461, 638
FspBI	CTAG	1 cut(s)	95
GlaI	GCGC	2 cut(s)	237, 459
GluI	GCNGC	4 cut(s)	387, 395, 461, 638
HaeII	RGCGCY	2 cut(s)	239, 461
HaeIII	GGCC	2 cut(s)	292, 647
HapII	CCGG	5 cut(s)	81, 293, 398, 406, 602
HgaI	GACGC	2 cut(s)	357, 378
HhaI	GCGC	2 cut(s)	238, 460
Hin1I	GRCGYC	3 cut(s)	368, 389, 458
Hin1II	CATG	3 cut(s)	421, 681, 686
Hin6I	GCGC	2 cut(s)	236, 458
HinP1I	GCGC	2 cut(s)	236, 458
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HpaII	CCGG	5 cut(s)	81, 293, 398, 406, 602
HphI	GGTGA	5 cut(s)	289, 523, 550, 587, 619
Hpy166II	GTNNAC	3 cut(s)	25, 141, 184
Hpy188I	TCNGA	7 cut(s)	15, 89, 102, 155, 232, 373, 414
Hpy188III	TCNNGA	5 cut(s)	175, 215, 221, 247, 271
Hpy8I	GTNNAC	3 cut(s)	25, 141, 184
Hpy99I	CGWCG	3 cut(s)	185, 373, 394
HpyAV	CCTTC	6 cut(s)	40, 67, 268, 579, 637, 683
HpyCH4III	ACNGT	1 cut(s)	660
HpyCH4V	TGCA	5 cut(s)	36, 108, 127, 528, 625
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 460, 602
HpyF3I	CTNAG	3 cut(s)	99, 336, 413
Hsp92I	GRCGYC	3 cut(s)	368, 389, 458
Hsp92II	CATG	3 cut(s)	421, 681, 686
HspAI	GCGC	2 cut(s)	236, 458
KasI	GGCGCC	1 cut(s)	457
KroI	GCCGGC	2 cut(s)	397, 601
KroNI	GCCGGC	2 cut(s)	399, 603
Kzo9I	GATC	5 cut(s)	177, 211, 217, 223, 762
LmnI	GCTCC	3 cut(s)	76, 89, 520
LweI	GCATC	3 cut(s)	251, 523, 634
MaeI	CTAG	1 cut(s)	95
MaeIII	GTNAC	1 cut(s)	654
MalI	GATC	5 cut(s)	179, 213, 219, 225, 764
MbiI	CCGCTC	1 cut(s)	637
MboI	GATC	5 cut(s)	177, 211, 217, 223, 762
MboII	GAAGA	8 cut(s)	190, 454, 496, 499, 502, 505, 568, 622
MflI	RGATCY	1 cut(s)	217
MhlI	GDGCHC	3 cut(s)	81, 94, 548
MluCI	AATT	2 cut(s)	446, 699
Mly113I	GGCGCC	1 cut(s)	458
MmeI	TCCRAC	1 cut(s)	351
MnlI	CCTC	6 cut(s)	226, 299, 348, 502, 571, 704
Mph1103I	ATGCAT	1 cut(s)	110
MreI	CGCCGGCG	1 cut(s)	397
MroNI	GCCGGC	2 cut(s)	397, 601
MroXI	GAANNNNTTC	1 cut(s)	54
MseI	TTAA	2 cut(s)	725, 787
MslI	CAYNNNNRTG	1 cut(s)	630
MspI	CCGG	5 cut(s)	81, 293, 398, 406, 602
MspR9I	CCNGG	2 cut(s)	81, 476
MvaI	CCWGG	1 cut(s)	476
MwoI	GCNNNNNNNGC	3 cut(s)	38, 460, 602
NaeI	GCCGGC	2 cut(s)	399, 603
NarI	GGCGCC	1 cut(s)	458
NciI	CCSGG	1 cut(s)	81
NdeII	GATC	5 cut(s)	177, 211, 217, 223, 762
NgoMIV	GCCGGC	2 cut(s)	397, 601
NlaIII	CATG	3 cut(s)	421, 681, 686
NlaIV	GGNNCC	4 cut(s)	78, 91, 459, 473
NmeAIII	GCCGAG	1 cut(s)	39
NmuCI	GTSAC	1 cut(s)	654
NsiI	ATGCAT	1 cut(s)	110
NspV	TTCGAA	2 cut(s)	8, 315
PcsI	WCGNNNNNNNCGW	3 cut(s)	207, 228, 398
PdiI	GCCGGC	2 cut(s)	399, 603
PdmI	GAANNNNTTC	1 cut(s)	54
PkrI	GCNGC	4 cut(s)	388, 396, 462, 639
PluTI	GGCGCC	1 cut(s)	461
Psp6I	CCWGG	1 cut(s)	474
PspGI	CCWGG	1 cut(s)	474
PspN4I	GGNNCC	4 cut(s)	78, 91, 459, 473
PspPI	GGNCC	2 cut(s)	162, 290
PstNI	CAGNNNCTG	1 cut(s)	658
PsuI	RGATCY	1 cut(s)	217
RsaI	GTAC	2 cut(s)	26, 140
RsaNI	GTAC	2 cut(s)	25, 139
RseI	CAYNNNNRTG	1 cut(s)	630
SalI	GTCGAC	1 cut(s)	182
SaqAI	TTAA	2 cut(s)	725, 787
SatI	GCNGC	4 cut(s)	387, 395, 461, 638
Sau3AI	GATC	5 cut(s)	177, 211, 217, 223, 762
Sau96I	GGNCC	2 cut(s)	162, 290
ScrFI	CCNGG	2 cut(s)	81, 476
SduI	GDGCHC	3 cut(s)	81, 94, 548
SetI	ASST	9 cut(s)	100, 167, 279, 337, 513, 525, 564, 694, 715
SfaNI	GCATC	3 cut(s)	251, 523, 634
SfoI	GGCGCC	1 cut(s)	459
SfuI	TTCGAA	2 cut(s)	8, 315
SgrAI	CRCCGGYG	1 cut(s)	397
SinI	GGWCC	1 cut(s)	162
SmiMI	CAYNNNNRTG	1 cut(s)	630
Sse9I	AATT	2 cut(s)	446, 699
SsiI	CCGC	7 cut(s)	160, 386, 395, 461, 536, 605, 637
SspDI	GGCGCC	1 cut(s)	457
SspMI	CTAG	1 cut(s)	95
StyD4I	CCNGG	2 cut(s)	79, 474
TaaI	ACNGT	1 cut(s)	660
TaqI	TCGA	9 cut(s)	8, 183, 210, 222, 253, 270, 315, 347, 425
TasI	AATT	2 cut(s)	446, 699
TatI	WGTACW	2 cut(s)	24, 138
TauI	GCSGC	4 cut(s)	389, 397, 463, 640
Tru1I	TTAA	2 cut(s)	725, 787
Tru9I	TTAA	2 cut(s)	725, 787
TscAI	CASTG	3 cut(s)	129, 663, 755
TseFI	GTSAC	1 cut(s)	654
Tsp45I	GTSAC	1 cut(s)	654
TspDTI	ATGAA	1 cut(s)	666
TspGWI	ACGGA	1 cut(s)	618
TspRI	CASTG	3 cut(s)	129, 663, 755
VpaK11BI	GGWCC	1 cut(s)	162
XmiI	GTMKAC	1 cut(s)	183
XmnI	GAANNNNTTC	1 cut(s)	54
XspI	CTAG	1 cut(s)	95
Zsp2I	ATGCAT	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.