Rmu_sc0021603.1_g000001

VAMP-like protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021603.1
Physical Location & Seq
Forward (+)
941 .. 1225
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021603.1_g000001.1.cds

Sequence Viewer

Length: 285 bp
atgatttcgaatccaagtctgatctactacgcctgcattgcccagaagatcagcaagattgagaaaaagcccgaaatcggagccatagctcataaatgcatcgagaaatccccaccgcaccattccttgtacacccacaccgtcagaaatcgaacctatgtcttctcaatggctgacccttttgtgatcttcggcattttcgatcaagatctcaatcaatctgaggcgcttttgttcttgaatagattgagatgcgacatcgagaggattaatggaaccgggtag

Protein Analysis

94

Amino Acids

10.74

Weight (kDa)

8.51

Isoelectric Point (pI)

54.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 116
AfaI GTAC 1 cut(s) 131
AfiI CCNNNNNNNGG 1 cut(s) 77
AgsI TTSAA 1 cut(s) 241
AluBI AGCT 1 cut(s) 89
AluI AGCT 1 cut(s) 89
AseI ATTAAT 1 cut(s) 270
AspLEI GCGC 1 cut(s) 229
AsuC2I CCSGG 1 cut(s) 280
AsuII TTCGAA 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 154
BcnI CCSGG 1 cut(s) 280
BfoI RGCGCY 1 cut(s) 230
BglII AGATCT 1 cut(s) 208
Bme1390I CCNGG 1 cut(s) 280
BmiI GGNNCC 2 cut(s) 82, 277
BmrFI CCNGG 1 cut(s) 280
BmsI GCATC 2 cut(s) 108, 242
BpiI GAAGAC 1 cut(s) 154
Bpu14I TTCGAA 1 cut(s) 8
BpuMI CCSGG 1 cut(s) 280
BsaBI GATNNNNATC 2 cut(s) 207, 213
Bsc4I CCNNNNNNNGG 1 cut(s) 77
Bse3DI GCAATG 1 cut(s) 36
Bse8I GATNNNNATC 2 cut(s) 207, 213
BseJI GATNNNNATC 2 cut(s) 207, 213
BseLI CCNNNNNNNGG 1 cut(s) 77
BseMI GCAATG 1 cut(s) 36
BseMII CTCAG 1 cut(s) 213
BsiSI CCGG 1 cut(s) 279
BslI CCNNNNNNNGG 1 cut(s) 77
Bsp119I TTCGAA 1 cut(s) 8
Bsp1407I TGTACA 1 cut(s) 129
Bsp143I GATC 5 cut(s) 21, 48, 186, 202, 208
BspACI CCGC 1 cut(s) 116
BspCNI CTCAG 1 cut(s) 214
BspLI GGNNCC 2 cut(s) 82, 277
BspT104I TTCGAA 1 cut(s) 8
BsrDI GCAATG 1 cut(s) 36
BsrGI TGTACA 1 cut(s) 129
BssMI GATC 5 cut(s) 21, 48, 186, 202, 208
Bst4CI ACNGT 1 cut(s) 142
BstAUI TGTACA 1 cut(s) 129
BstBI TTCGAA 1 cut(s) 8
BstC8I GCNNGC 1 cut(s) 34
BstDEI CTNAG 1 cut(s) 222
BstH2I RGCGCY 1 cut(s) 230
BstHHI GCGC 1 cut(s) 229
BstKTI GATC 5 cut(s) 24, 51, 189, 205, 211
BstMBI GATC 5 cut(s) 21, 48, 186, 202, 208
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstSCI CCNGG 1 cut(s) 278
BstV2I GAAGAC 1 cut(s) 154
BstX2I RGATCY 1 cut(s) 208
BstYI RGATCY 1 cut(s) 208
Cac8I GCNNGC 1 cut(s) 34
CfoI GCGC 1 cut(s) 229
Csp6I GTAC 1 cut(s) 130
CviJI RGCY 4 cut(s) 70, 83, 89, 173
CviKI_1 RGCY 4 cut(s) 70, 83, 89, 173
CviQI GTAC 1 cut(s) 130
DdeI CTNAG 1 cut(s) 222
DpnI GATC 5 cut(s) 23, 50, 188, 204, 210
DpnII GATC 5 cut(s) 21, 48, 186, 202, 208
EcoT22I ATGCAT 1 cut(s) 101
FaiI YATR 3 cut(s) 86, 93, 159
GlaI GCGC 1 cut(s) 228
HaeII RGCGCY 1 cut(s) 230
HapII CCGG 1 cut(s) 279
HhaI GCGC 1 cut(s) 229
Hin6I GCGC 1 cut(s) 227
HinP1I GCGC 1 cut(s) 227
HinfI GANTC 1 cut(s) 10
HpaII CCGG 1 cut(s) 279
Hpy166II GTNNAC 1 cut(s) 132
Hpy188I TCNGA 4 cut(s) 21, 80, 146, 223
Hpy188III TCNNGA 4 cut(s) 103, 206, 238, 262
Hpy8I GTNNAC 1 cut(s) 132
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4V TGCA 2 cut(s) 36, 99
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpyF3I CTNAG 1 cut(s) 222
HspAI GCGC 1 cut(s) 227
Kzo9I GATC 5 cut(s) 21, 48, 186, 202, 208
LmnI GCTCC 1 cut(s) 80
LpnPI CCDG 2 cut(s) 46, 56
LweI GCATC 2 cut(s) 108, 242
MalI GATC 5 cut(s) 23, 50, 188, 204, 210
MboI GATC 5 cut(s) 21, 48, 186, 202, 208
MboII GAAGA 3 cut(s) 58, 154, 181
MflI RGATCY 1 cut(s) 208
MnlI CCTC 2 cut(s) 217, 258
Mph1103I ATGCAT 1 cut(s) 101
MseI TTAA 1 cut(s) 270
MspI CCGG 1 cut(s) 279
MspR9I CCNGG 1 cut(s) 280
MwoI GCNNNNNNNGC 1 cut(s) 38
NciI CCSGG 1 cut(s) 280
NdeII GATC 5 cut(s) 21, 48, 186, 202, 208
NlaIV GGNNCC 2 cut(s) 82, 277
NsiI ATGCAT 1 cut(s) 101
NspV TTCGAA 1 cut(s) 8
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PfeI GAWTC 1 cut(s) 10
PshBI ATTAAT 1 cut(s) 270
PspN4I GGNNCC 2 cut(s) 82, 277
PsuI RGATCY 1 cut(s) 208
RsaI GTAC 1 cut(s) 131
RsaNI GTAC 1 cut(s) 130
SaqAI TTAA 1 cut(s) 270
Sau3AI GATC 5 cut(s) 21, 48, 186, 202, 208
ScrFI CCNGG 1 cut(s) 280
SetI ASST 2 cut(s) 91, 158
SfaNI GCATC 2 cut(s) 108, 242
SfuI TTCGAA 1 cut(s) 8
SsiI CCGC 1 cut(s) 116
StyD4I CCNGG 1 cut(s) 278
TaaI ACNGT 1 cut(s) 142
TaqI TCGA 5 cut(s) 8, 102, 151, 201, 261
TatI WGTACW 1 cut(s) 129
TfiI GAWTC 1 cut(s) 10
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
VspI ATTAAT 1 cut(s) 270
Zsp2I ATGCAT 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.