Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0005292

Physical Location & Seq

Genomic Coordinates Reverse (-)

67727583 .. 67728359

Gene Structure 777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG415900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGATTTCGAATCCGGGTCTGGTGTACTACGCCTGCATTGCCCAGAAGGAAACGATTCTCGGCGAGATTGCGAAGGAGCCCGGAATCGGAGCCCTAGCTCAGAAATGCATTGCGAAAACCCCACTTCACCACTCCCTGTACACCCACACCGTCAGAAAGCGGACCTACGTGTTCTTGGTCGTCGACCCTTTTGTGTTCTTCGGCATTTTCGATCAAGATCTCGATCAGTCCGAGGCGCTTTCGTTCTTGAATCGATTGAGATGCGATTTCGAGAAGGTGAATGGAGTTGGGTCGGTCTTGGATGGAGGAGATTTCGAATCGCATTGTTTTCAAGCTGAGTTTGATTCGATTATGAGGGAGGTGATGGCGTCGGAGATGGATTCGGCGGCGTCGCCGCCGGCGACGCCGCCGGCGAGTCGGAATCTGAGCATGGATTCGAGTAGTAGTAAAGGGAAGAAATTGGTGCTGGCGCCGCTGCTGGGGAACCAGGGGTTGAAGAAGAAGAAGAGATTGTCTGGGGAGGTGAATGGGGAGCTGTGCAAAGATGTGGTGATGAGCACGATGGAGAAGAAGCTGGATGTGGGTGGTGAGGATGGAAGGGATTTCGCAATGCCGGCGCTGAAGAGTGGGGGTTTGCATCCGTGTGAGCGGCAGAAGGCCAAGCAGGTGTGGAGGAGGCATGTGTGGGTGGTGCTGGTGCTGGACTTGTTCGTGTGTGCCGTCTTGTTTGGGGTTTGGTTGTGGGTTTGCAGGGGGTTTAAGTGCATCGACAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

258

Amino Acids

28.52

Weight (kDa)

8.04

Isoelectric Point (pI)

38.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27840 AT5G52990
fragaria_vesca	FvH4_7g31440
malus_domestica	MD01G1217900.v1.1 MD07G1287600.v1.1
prunus_persica	Prupe.2G309300_v2.0.a1
pyrus_communis	pycom01g22800 pycom07g26050
rosa_chinensis	RchiOBHm_Chr1g0359031 RchiOBHm_Chr1g0380501 RchiOBHm_Chr2g0122261
rosa_laevigata	RLG00000026291
rosa_multiflora	Rmu_co8212514.1_g000001 Rmu_sc0001733.1_g000002 Rmu_sc0006267.1_g000010 Rmu_sc0006712.1_g000003 Rmu_sc0021603.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279270
rosa_rugosa	Rorug01G0267400 Rorug01G0421300
rosa_samantha	Rh1AG280600 Rh1AG446400 Rh1BG247600 Rh1BG401600 Rh1CG415900 Rh1DG431800 Rh2BG305100 Rh2CG283500
rosa_wichuraiana	Rw1G038830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	655
Acc36I	ACCTGC	1 cut(s)	655
AccB1I	GGYRCC	1 cut(s)	469
AccBSI	CCGCTC	1 cut(s)	649
AccI	GTMKAC	1 cut(s)	183
AciI	CCGC	6 cut(s)	160, 386, 395, 407, 473, 649
AcuI	CTGAAG	1 cut(s)	641
AcyI	GRCGYC	4 cut(s)	368, 389, 404, 470
AfaI	GTAC	2 cut(s)	26, 140
AfiI	CCNNNNNNNGG	2 cut(s)	86, 479
AflIII	ACRYGT	1 cut(s)	168
AgsI	TTSAA	3 cut(s)	250, 332, 496
AjnI	CCWGG	1 cut(s)	486
AluBI	AGCT	4 cut(s)	98, 335, 535, 574
AluI	AGCT	4 cut(s)	98, 335, 535, 574
Alw21I	GWGCWC	1 cut(s)	560
AoxI	GGCC	1 cut(s)	657
ApeKI	GCWGC	1 cut(s)	475
Asp700I	GAANNNNTTC	1 cut(s)	54
AspLEI	GCGC	3 cut(s)	238, 472, 619
AspS9I	GGNCC	1 cut(s)	162
AsuC2I	CCSGG	2 cut(s)	15, 81
AsuHPI	GGTGA	6 cut(s)	119, 289, 373, 535, 562, 599
AsuII	TTCGAA	2 cut(s)	8, 315
AvaII	GGWCC	1 cut(s)	162
BanI	GGYRCC	1 cut(s)	469
BanII	GRGCYC	2 cut(s)	81, 94
Bbv12I	GWGCWC	1 cut(s)	560
BbvI	GCAGC	1 cut(s)	462
BccI	CCATC	5 cut(s)	296, 358, 370, 556, 587
BceAI	ACGGC	1 cut(s)	704
BcgI	CGANNNNNNTGC	2 cut(s)	243, 277
BciT130I	CCWGG	1 cut(s)	488
BcnI	CCSGG	2 cut(s)	15, 81
BfaI	CTAG	1 cut(s)	95
BfoI	RGCGCY	3 cut(s)	239, 473, 620
BfuAI	ACCTGC	1 cut(s)	655
BglII	AGATCT	1 cut(s)	217
BisI	GCNGC	6 cut(s)	387, 395, 407, 473, 476, 650
BlsI	GCNGC	6 cut(s)	388, 396, 408, 474, 477, 651
Bme1390I	CCNGG	3 cut(s)	15, 81, 488
Bme18I	GGWCC	1 cut(s)	162
BmgT120I	GGNCC	1 cut(s)	162
BmiI	GGNNCC	4 cut(s)	78, 91, 471, 485
BmrFI	CCNGG	3 cut(s)	15, 81, 488
BmsI	GCATC	2 cut(s)	251, 646
Bpu14I	TTCGAA	2 cut(s)	8, 315
BpuMI	CCSGG	2 cut(s)	15, 81
Bsa29I	ATCGAT	1 cut(s)	253
BsaAI	YACGTR	1 cut(s)	169
BsaBI	GATNNNNATC	2 cut(s)	216, 222
BsaHI	GRCGYC	4 cut(s)	368, 389, 404, 470
BsaJI	CCNNGG	2 cut(s)	231, 487
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 479
Bse118I	RCCGGY	3 cut(s)	397, 409, 613
Bse3DI	GCAATG	3 cut(s)	36, 108, 615
Bse8I	GATNNNNATC	2 cut(s)	216, 222
BseBI	CCWGG	1 cut(s)	488
BseCI	ATCGAT	1 cut(s)	253
BseDI	CCNNGG	2 cut(s)	231, 487
BseGI	GGATG	4 cut(s)	307, 583, 598, 637
BseJI	GATNNNNATC	2 cut(s)	216, 222
BseLI	CCNNNNNNNGG	2 cut(s)	86, 479
BseMI	GCAATG	3 cut(s)	36, 108, 615
BseMII	CTCAG	3 cut(s)	113, 327, 416
BseRI	GAGGAG	2 cut(s)	321, 688
BseXI	GCAGC	1 cut(s)	462
BseYI	CCCAGC	1 cut(s)	478
BshFI	GGCC	1 cut(s)	659
BshNI	GGYRCC	1 cut(s)	469
BshVI	ATCGAT	1 cut(s)	253
BsiHKAI	GWGCWC	1 cut(s)	560
BsiSI	CCGG	5 cut(s)	14, 81, 398, 410, 614
BslI	CCNNNNNNNGG	2 cut(s)	86, 479
BsnI	GGCC	1 cut(s)	659
Bsp119I	TTCGAA	2 cut(s)	8, 315
Bsp1286I	GDGCHC	3 cut(s)	81, 94, 560
Bsp1407I	TGTACA	1 cut(s)	138
Bsp143I	GATC	3 cut(s)	211, 217, 223
BspACI	CCGC	6 cut(s)	160, 386, 395, 407, 473, 649
BspANI	GGCC	1 cut(s)	659
BspCNI	CTCAG	3 cut(s)	112, 328, 417
BspDI	ATCGAT	1 cut(s)	253
BspLI	GGNNCC	4 cut(s)	78, 91, 471, 485
BspMI	ACCTGC	1 cut(s)	655
BspT104I	TTCGAA	2 cut(s)	8, 315
BspT107I	GGYRCC	1 cut(s)	469
BsrBI	CCGCTC	1 cut(s)	649
BsrDI	GCAATG	3 cut(s)	36, 108, 615
BsrFI	RCCGGY	3 cut(s)	397, 409, 613
BsrGI	TGTACA	1 cut(s)	138
BssAI	RCCGGY	3 cut(s)	397, 409, 613
BssECI	CCNNGG	2 cut(s)	231, 487
BssMI	GATC	3 cut(s)	211, 217, 223
BssNI	GRCGYC	4 cut(s)	368, 389, 404, 470
Bst2UI	CCWGG	1 cut(s)	488
Bst4CI	ACNGT	2 cut(s)	151, 773
Bst6I	CTCTTC	2 cut(s)	500, 617
BstACI	GRCGYC	4 cut(s)	368, 389, 404, 470
BstAUI	TGTACA	1 cut(s)	138
BstBAI	YACGTR	1 cut(s)	169
BstBI	TTCGAA	2 cut(s)	8, 315
BstC8I	GCNNGC	5 cut(s)	34, 399, 411, 468, 615
BstDEI	CTNAG	3 cut(s)	99, 336, 425
BstF5I	GGATG	4 cut(s)	307, 583, 598, 637
BstH2I	RGCGCY	3 cut(s)	239, 473, 620
BstHHI	GCGC	3 cut(s)	238, 472, 619
BstKTI	GATC	3 cut(s)	214, 220, 226
BstMBI	GATC	3 cut(s)	211, 217, 223
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 403, 472, 614
BstNI	CCWGG	1 cut(s)	488
BstNSI	RCATGY	1 cut(s)	683
BstSCI	CCNGG	3 cut(s)	13, 79, 486
BstV1I	GCAGC	1 cut(s)	462
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
Bsu15I	ATCGAT	1 cut(s)	253
BsuRI	GGCC	1 cut(s)	659
BsuTUI	ATCGAT	1 cut(s)	253
BtsCI	GGATG	4 cut(s)	307, 583, 598, 637
BveI	ACCTGC	1 cut(s)	655
Cac8I	GCNNGC	5 cut(s)	34, 399, 411, 468, 615
CfoI	GCGC	3 cut(s)	238, 472, 619
Cfr10I	RCCGGY	3 cut(s)	397, 409, 613
Cfr13I	GGNCC	1 cut(s)	162
ClaI	ATCGAT	1 cut(s)	253
CseI	GACGC	3 cut(s)	357, 378, 412
Csp6I	GTAC	2 cut(s)	25, 139
CviAII	CATG	2 cut(s)	430, 680
CviJI	RGCY	7 cut(s)	79, 92, 98, 335, 535, 574, 659
CviKI_1	RGCY	7 cut(s)	79, 92, 98, 335, 535, 574, 659
CviQI	GTAC	2 cut(s)	25, 139
DdeI	CTNAG	3 cut(s)	99, 336, 425
DinI	GGCGCC	1 cut(s)	471
DpnI	GATC	3 cut(s)	213, 219, 225
DpnII	GATC	3 cut(s)	211, 217, 223
Eam1104I	CTCTTC	2 cut(s)	500, 617
EarI	CTCTTC	2 cut(s)	500, 617
Eco24I	GRGCYC	2 cut(s)	81, 94
Eco47I	GGWCC	1 cut(s)	162
Eco57I	CTGAAG	1 cut(s)	641
EcoRII	CCWGG	1 cut(s)	486
EcoT22I	ATGCAT	1 cut(s)	110
EcoT38I	GRGCYC	2 cut(s)	81, 94
EgeI	GGCGCC	1 cut(s)	471
EheI	GGCGCC	1 cut(s)	471
FaeI	CATG	2 cut(s)	433, 683
FaiI	YATR	3 cut(s)	353, 431, 681
FatI	CATG	2 cut(s)	429, 679
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	6 cut(s)	387, 395, 407, 473, 476, 650
FokI	GGATG	4 cut(s)	314, 590, 605, 624
FriOI	GRGCYC	2 cut(s)	81, 94
Fsp4HI	GCNGC	6 cut(s)	387, 395, 407, 473, 476, 650
FspBI	CTAG	1 cut(s)	95
GlaI	GCGC	3 cut(s)	237, 471, 618
GluI	GCNGC	6 cut(s)	387, 395, 407, 473, 476, 650
GsaI	CCCAGC	1 cut(s)	482
HaeII	RGCGCY	3 cut(s)	239, 473, 620
HaeIII	GGCC	1 cut(s)	659
HapII	CCGG	5 cut(s)	14, 81, 398, 410, 614
HgaI	GACGC	3 cut(s)	357, 378, 412
HhaI	GCGC	3 cut(s)	238, 472, 619
Hin1I	GRCGYC	4 cut(s)	368, 389, 404, 470
Hin1II	CATG	2 cut(s)	433, 683
Hin6I	GCGC	3 cut(s)	236, 470, 617
HinP1I	GCGC	3 cut(s)	236, 470, 617
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HpaII	CCGG	5 cut(s)	14, 81, 398, 410, 614
HphI	GGTGA	6 cut(s)	119, 289, 373, 535, 562, 599
Hpy166II	GTNNAC	3 cut(s)	25, 141, 184
Hpy188I	TCNGA	7 cut(s)	89, 102, 155, 232, 373, 420, 426
Hpy188III	TCNNGA	4 cut(s)	215, 221, 247, 271
Hpy8I	GTNNAC	3 cut(s)	25, 141, 184
Hpy99I	CGWCG	4 cut(s)	185, 373, 394, 406
HpyAV	CCTTC	5 cut(s)	40, 67, 268, 591, 649
HpyCH4III	ACNGT	2 cut(s)	151, 773
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	6 cut(s)	36, 108, 540, 637, 750, 765
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 403, 472, 614
HpyF3I	CTNAG	3 cut(s)	99, 336, 425
HpySE526I	ACGT	1 cut(s)	168
Hsp92I	GRCGYC	4 cut(s)	368, 389, 404, 470
Hsp92II	CATG	2 cut(s)	433, 683
HspAI	GCGC	3 cut(s)	236, 470, 617
KasI	GGCGCC	1 cut(s)	469
KroI	GCCGGC	3 cut(s)	397, 409, 613
KroNI	GCCGGC	3 cut(s)	399, 411, 615
Kzo9I	GATC	3 cut(s)	211, 217, 223
LmnI	GCTCC	3 cut(s)	76, 89, 532
Lsp1109I	GCAGC	1 cut(s)	462
LweI	GCATC	2 cut(s)	251, 646
MaeI	CTAG	1 cut(s)	95
MaeII	ACGT	1 cut(s)	168
MalI	GATC	3 cut(s)	213, 219, 225
MbiI	CCGCTC	1 cut(s)	649
MboI	GATC	3 cut(s)	211, 217, 223
MboII	GAAGA	8 cut(s)	190, 466, 508, 511, 514, 517, 580, 634
MflI	RGATCY	1 cut(s)	217
MhlI	GDGCHC	3 cut(s)	81, 94, 560
MluCI	AATT	1 cut(s)	458
Mly113I	GGCGCC	1 cut(s)	470
MlyI	GAGTC	1 cut(s)	424
MmeI	TCCRAC	2 cut(s)	351, 398
MnlI	CCTC	8 cut(s)	226, 299, 348, 352, 514, 583, 666, 669
Mph1103I	ATGCAT	1 cut(s)	110
MreI	CGCCGGCG	2 cut(s)	397, 409
MroNI	GCCGGC	3 cut(s)	397, 409, 613
MroXI	GAANNNNTTC	1 cut(s)	54
MseI	TTAA	1 cut(s)	759
MslI	CAYNNNNRTG	1 cut(s)	642
MspA1I	CMGCKG	1 cut(s)	475
MspI	CCGG	5 cut(s)	14, 81, 398, 410, 614
MspR9I	CCNGG	3 cut(s)	15, 81, 488
MvaI	CCWGG	1 cut(s)	488
MwoI	GCNNNNNNNGC	4 cut(s)	38, 403, 472, 614
NaeI	GCCGGC	3 cut(s)	399, 411, 615
NarI	GGCGCC	1 cut(s)	470
NciI	CCSGG	2 cut(s)	15, 81
NdeII	GATC	3 cut(s)	211, 217, 223
NgoMIV	GCCGGC	3 cut(s)	397, 409, 613
NlaIII	CATG	2 cut(s)	433, 683
NlaIV	GGNNCC	4 cut(s)	78, 91, 471, 485
NmeAIII	GCCGAG	1 cut(s)	39
NsiI	ATGCAT	1 cut(s)	110
NspI	RCATGY	1 cut(s)	683
NspV	TTCGAA	2 cut(s)	8, 315
PaqCI	CACCTGC	1 cut(s)	655
PcsI	WCGNNNNNNNCGW	5 cut(s)	207, 228, 398, 410, 717
PdiI	GCCGGC	3 cut(s)	399, 411, 615
PdmI	GAANNNNTTC	1 cut(s)	54
PfeI	GAWTC	9 cut(s)	10, 55, 84, 250, 317, 344, 380, 421, 434
PkrI	GCNGC	6 cut(s)	388, 396, 408, 474, 477, 651
PleI	GAGTC	1 cut(s)	423
PluTI	GGCGCC	1 cut(s)	473
PpsI	GAGTC	1 cut(s)	423
Ppu21I	YACGTR	1 cut(s)	169
Psp6I	CCWGG	1 cut(s)	486
PspFI	CCCAGC	1 cut(s)	478
PspGI	CCWGG	1 cut(s)	486
PspN4I	GGNNCC	4 cut(s)	78, 91, 471, 485
PspPI	GGNCC	1 cut(s)	162
PsuI	RGATCY	1 cut(s)	217
RsaI	GTAC	2 cut(s)	26, 140
RsaNI	GTAC	2 cut(s)	25, 139
RseI	CAYNNNNRTG	1 cut(s)	642
SalI	GTCGAC	1 cut(s)	182
SaqAI	TTAA	1 cut(s)	759
SatI	GCNGC	6 cut(s)	387, 395, 407, 473, 476, 650
Sau3AI	GATC	3 cut(s)	211, 217, 223
Sau96I	GGNCC	1 cut(s)	162
SchI	GAGTC	1 cut(s)	424
ScrFI	CCNGG	3 cut(s)	15, 81, 488
SduI	GDGCHC	3 cut(s)	81, 94, 560
SfaNI	GCATC	2 cut(s)	251, 646
SfoI	GGCGCC	1 cut(s)	471
SfuI	TTCGAA	2 cut(s)	8, 315
SgrAI	CRCCGGYG	2 cut(s)	397, 409
SinI	GGWCC	1 cut(s)	162
SmiMI	CAYNNNNRTG	1 cut(s)	642
Sse9I	AATT	1 cut(s)	458
SsiI	CCGC	6 cut(s)	160, 386, 395, 407, 473, 649
SspDI	GGCGCC	1 cut(s)	469
SspMI	CTAG	1 cut(s)	95
StyD4I	CCNGG	3 cut(s)	13, 79, 486
TaaI	ACNGT	2 cut(s)	151, 773
TaiI	ACGT	1 cut(s)	171
TaqII	GACCGA	1 cut(s)	283
TasI	AATT	1 cut(s)	458
TatI	WGTACW	2 cut(s)	24, 138
TauI	GCSGC	5 cut(s)	389, 397, 409, 475, 652
TfiI	GAWTC	9 cut(s)	10, 55, 84, 250, 317, 344, 380, 421, 434
Tru1I	TTAA	1 cut(s)	759
Tru9I	TTAA	1 cut(s)	759
TseI	GCWGC	1 cut(s)	475
TspGWI	ACGGA	1 cut(s)	630
VpaK11BI	GGWCC	1 cut(s)	162
XceI	RCATGY	1 cut(s)	683
XmiI	GTMKAC	1 cut(s)	183
XmnI	GAANNNNTTC	1 cut(s)	54
XspI	CTAG	1 cut(s)	95
Zsp2I	ATGCAT	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.