Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0005292

Physical Location & Seq

Genomic Coordinates Reverse (-)

29304976 .. 29306605

Gene Structure 1630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G309300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGATTTCGAATCCAAATCTCATTTACTACGCCTGCATTGCCCATAAAACCACAATTATCGGCGAGTTCTCCAAAGAACCCGGTCTCGGAGCCTTGGCTCAACAATGCATCGAGATAACCCCACCTCACCATTCCATGTACACTCACACGGTGAGAAAAAGAACCTACACCTTCTTAATTCATGACCCTTTTGTCTATTTTGCTATATTCGATGATGATCTTGATCAGTCCGAGGCCCTTTCCTTCTTAAACCGCTTAAAATGCGATTTTGAGGAGGCTAATGGTAGTGGGTCGATATTGGTTCGTGATAATTATGCCTCCCATTGCTTCCAAGCTCAGTTTGATTCGATTATCCGAAAAATAATGGCCTCGGACTTGGAGTTGCCCAATTCTCCTCCAGCCAGTCGAAATCTCAGCTTGAGTTCGAGCAAAGGGAAGAAATTGGTCTTGACACCGCTGCTTGGGAAGAAGACCAGCGAAGGGTTGAAGAAGAAGAAGAGATTGTCTGGGGAGCTTAATGGGGATGCTGGCAAAGATGTGACCACAATGGAGAAGAAGGTGGATGTTTGTGATGACGTTAATGGTGGGTTTAGAGATTTTTCATTGCAAACACAAAAGAATGGTCCTTTGCTTTCAGGTGATCGCCAAAAGGCCAAGCAAGTTTGGAGGAAACATGTTTGGGTGGTGTTGATGCTCGACTTGTTTGTCTGTGCCATCTTGTTTGGGATTTGGTTGTGGGTTTGCAGGGGATTCAAGTGCATTGACGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

257

Amino Acids

28.75

Weight (kDa)

8.7

Isoelectric Point (pI)

33.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27840 AT5G52990
fragaria_vesca	FvH4_7g31440
malus_domestica	MD01G1217900.v1.1 MD07G1287600.v1.1
prunus_persica	Prupe.2G309300_v2.0.a1
pyrus_communis	pycom01g22800 pycom07g26050
rosa_chinensis	RchiOBHm_Chr1g0359031 RchiOBHm_Chr1g0380501 RchiOBHm_Chr2g0122261
rosa_laevigata	RLG00000026291
rosa_multiflora	Rmu_co8212514.1_g000001 Rmu_sc0001733.1_g000002 Rmu_sc0006267.1_g000010 Rmu_sc0006712.1_g000003 Rmu_sc0021603.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279270
rosa_rugosa	Rorug01G0267400 Rorug01G0421300
rosa_samantha	Rh1AG280600 Rh1AG446400 Rh1BG247600 Rh1BG401600 Rh1CG415900 Rh1DG431800 Rh2BG305100 Rh2CG283500
rosa_wichuraiana	Rw1G038830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	191, 704
AciI	CCGC	2 cut(s)	253, 455
AdeI	CACNNNGTG	1 cut(s)	151
AfaI	GTAC	1 cut(s)	140
AfiI	CCNNNNNNNGG	3 cut(s)	86, 461, 480
AflIII	ACRYGT	1 cut(s)	673
AgsI	TTSAA	2 cut(s)	487, 754
AluBI	AGCT	3 cut(s)	335, 417, 514
AluI	AGCT	3 cut(s)	335, 417, 514
Alw26I	GTCTC	1 cut(s)	89
AoxI	GGCC	3 cut(s)	234, 366, 651
ApeKI	GCWGC	1 cut(s)	457
ArsI	GACNNNNNNTTYG	2 cut(s)	607, 639
AspS9I	GGNCC	2 cut(s)	235, 623
AsuC2I	CCSGG	1 cut(s)	81
AsuHPI	GGTGA	3 cut(s)	119, 163, 650
AsuII	TTCGAA	1 cut(s)	8
AvaII	GGWCC	1 cut(s)	623
BbsI	GAAGAC	1 cut(s)	476
BbvI	GCAGC	1 cut(s)	444
BccI	CCATC	1 cut(s)	722
BclI	TGATCA	1 cut(s)	223
BcnI	CCSGG	1 cut(s)	81
BcoDI	GTCTC	1 cut(s)	89
BisI	GCNGC	1 cut(s)	458
BlsI	GCNGC	1 cut(s)	459
Bme1390I	CCNGG	1 cut(s)	81
Bme18I	GGWCC	1 cut(s)	623
BmgT120I	GGNCC	2 cut(s)	235, 623
BmiI	GGNNCC	1 cut(s)	91
BmrFI	CCNGG	1 cut(s)	81
BmsI	GCATC	3 cut(s)	117, 514, 681
BpiI	GAAGAC	1 cut(s)	476
BpmI	CTGGAG	1 cut(s)	381
Bpu14I	TTCGAA	1 cut(s)	8
BpuEI	CTTGAG	1 cut(s)	439
BpuMI	CCSGG	1 cut(s)	81
BsaBI	GATNNNNATC	2 cut(s)	216, 222
BsaI	GGTCTC	1 cut(s)	89
BsaJI	CCNNGG	3 cut(s)	93, 231, 369
Bsc4I	CCNNNNNNNGG	3 cut(s)	86, 461, 480
Bse1I	ACTGG	1 cut(s)	402
Bse3DI	GCAATG	3 cut(s)	36, 322, 602
Bse8I	GATNNNNATC	2 cut(s)	216, 222
BseDI	CCNNGG	3 cut(s)	93, 231, 369
BseGI	GGATG	2 cut(s)	529, 568
BseJI	GATNNNNATC	2 cut(s)	216, 222
BseLI	CCNNNNNNNGG	3 cut(s)	86, 461, 480
BseMI	GCAATG	3 cut(s)	36, 322, 602
BseMII	CTCAG	2 cut(s)	350, 427
BseNI	ACTGG	1 cut(s)	402
BseRI	GAGGAG	2 cut(s)	287, 384
BseXI	GCAGC	1 cut(s)	444
BshFI	GGCC	3 cut(s)	236, 368, 653
BsiSI	CCGG	1 cut(s)	81
BslI	CCNNNNNNNGG	3 cut(s)	86, 461, 480
BsmAI	GTCTC	1 cut(s)	89
BsnI	GGCC	3 cut(s)	236, 368, 653
Bso31I	GGTCTC	1 cut(s)	89
Bsp119I	TTCGAA	1 cut(s)	8
Bsp1407I	TGTACA	1 cut(s)	138
Bsp143I	GATC	3 cut(s)	217, 223, 640
BspACI	CCGC	2 cut(s)	253, 455
BspANI	GGCC	3 cut(s)	236, 368, 653
BspCNI	CTCAG	2 cut(s)	349, 426
BspHI	TCATGA	1 cut(s)	181
BspLI	GGNNCC	1 cut(s)	91
BspT104I	TTCGAA	1 cut(s)	8
BspTNI	GGTCTC	1 cut(s)	89
BsrDI	GCAATG	3 cut(s)	36, 322, 602
BsrGI	TGTACA	1 cut(s)	138
BsrI	ACTGG	1 cut(s)	402
BssECI	CCNNGG	3 cut(s)	93, 231, 369
BssMI	GATC	3 cut(s)	217, 223, 640
BssT1I	CCWWGG	1 cut(s)	93
Bst4CI	ACNGT	2 cut(s)	151, 767
Bst6I	CTCTTC	1 cut(s)	491
BstAUI	TGTACA	1 cut(s)	138
BstBI	TTCGAA	1 cut(s)	8
BstC8I	GCNNGC	2 cut(s)	34, 529
BstDEI	CTNAG	2 cut(s)	336, 413
BstF5I	GGATG	2 cut(s)	529, 568
BstKTI	GATC	3 cut(s)	220, 226, 643
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	3 cut(s)	217, 223, 640
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 261
BstNSI	RCATGY	1 cut(s)	677
BstSCI	CCNGG	1 cut(s)	79
BstV1I	GCAGC	1 cut(s)	444
BstV2I	GAAGAC	1 cut(s)	476
BsuRI	GGCC	3 cut(s)	236, 368, 653
BtsCI	GGATG	2 cut(s)	529, 568
Cac8I	GCNNGC	2 cut(s)	34, 529
CciI	TCATGA	1 cut(s)	181
Cfr13I	GGNCC	2 cut(s)	235, 623
Csp6I	GTAC	1 cut(s)	139
CviAII	CATG	3 cut(s)	136, 182, 674
CviQI	GTAC	1 cut(s)	139
DdeI	CTNAG	2 cut(s)	336, 413
DpnI	GATC	3 cut(s)	219, 225, 642
DpnII	GATC	3 cut(s)	217, 223, 640
DraIII	CACNNNGTG	1 cut(s)	151
DrdI	GACNNNNNNGTC	2 cut(s)	191, 704
DseDI	GACNNNNNNGTC	2 cut(s)	191, 704
Eam1104I	CTCTTC	1 cut(s)	491
EarI	CTCTTC	1 cut(s)	491
Eco130I	CCWWGG	1 cut(s)	93
Eco31I	GGTCTC	1 cut(s)	89
Eco47I	GGWCC	1 cut(s)	623
EcoO109I	RGGNCCY	1 cut(s)	235
EcoT14I	CCWWGG	1 cut(s)	93
EcoT22I	ATGCAT	1 cut(s)	110
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	3 cut(s)	139, 185, 677
FaiI	YATR	6 cut(s)	45, 137, 183, 206, 315, 675
FatI	CATG	3 cut(s)	135, 181, 673
FbaI	TGATCA	1 cut(s)	223
Fnu4HI	GCNGC	1 cut(s)	458
FokI	GGATG	2 cut(s)	536, 575
Fsp4HI	GCNGC	1 cut(s)	458
GluI	GCNGC	1 cut(s)	458
GsuI	CTGGAG	1 cut(s)	381
HaeIII	GGCC	3 cut(s)	236, 368, 653
HapII	CCGG	1 cut(s)	81
Hin1II	CATG	3 cut(s)	139, 185, 677
HinfI	GANTC	3 cut(s)	10, 344, 750
HpaII	CCGG	1 cut(s)	81
HphI	GGTGA	3 cut(s)	119, 163, 650
Hpy166II	GTNNAC	1 cut(s)	141
Hpy188I	TCNGA	4 cut(s)	89, 232, 356, 373
Hpy188III	TCNNGA	5 cut(s)	112, 182, 221, 305, 448
Hpy8I	GTNNAC	1 cut(s)	141
HpyAV	CCTTC	4 cut(s)	181, 253, 473, 550
HpyCH4III	ACNGT	2 cut(s)	151, 767
HpyCH4IV	ACGT	1 cut(s)	576
HpyCH4V	TGCA	5 cut(s)	36, 108, 607, 744, 759
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 261
HpyF3I	CTNAG	2 cut(s)	336, 413
HpySE526I	ACGT	1 cut(s)	576
Hsp92II	CATG	3 cut(s)	139, 185, 677
Ksp22I	TGATCA	1 cut(s)	223
Kzo9I	GATC	3 cut(s)	217, 223, 640
LmnI	GCTCC	2 cut(s)	89, 511
LpnPI	CCDG	9 cut(s)	46, 94, 411, 415, 487, 492, 513, 621, 730
Lsp1109I	GCAGC	1 cut(s)	444
LweI	GCATC	3 cut(s)	117, 514, 681
MaeII	ACGT	1 cut(s)	576
MaeIII	GTNAC	1 cut(s)	538
MalI	GATC	3 cut(s)	219, 225, 642
MboI	GATC	3 cut(s)	217, 223, 640
MboII	GAAGA	8 cut(s)	448, 478, 481, 499, 502, 505, 508, 565
MluCI	AATT	5 cut(s)	54, 177, 310, 388, 440
MnlI	CCTC	8 cut(s)	135, 226, 265, 268, 328, 379, 405, 660
Mph1103I	ATGCAT	1 cut(s)	110
MseI	TTAA	5 cut(s)	176, 248, 257, 516, 579
MspA1I	CMGCKG	1 cut(s)	457
MspI	CCGG	1 cut(s)	81
MspR9I	CCNGG	1 cut(s)	81
MwoI	GCNNNNNNNGC	2 cut(s)	38, 261
NciI	CCSGG	1 cut(s)	81
NdeII	GATC	3 cut(s)	217, 223, 640
NlaIII	CATG	3 cut(s)	139, 185, 677
NlaIV	GGNNCC	1 cut(s)	91
NmuCI	GTSAC	1 cut(s)	538
NsiI	ATGCAT	1 cut(s)	110
NspI	RCATGY	1 cut(s)	677
NspV	TTCGAA	1 cut(s)	8
PagI	TCATGA	1 cut(s)	181
PciI	ACATGT	1 cut(s)	673
PfeI	GAWTC	3 cut(s)	10, 344, 750
PkrI	GCNGC	1 cut(s)	459
PscI	ACATGT	1 cut(s)	673
PspN4I	GGNNCC	1 cut(s)	91
PspPI	GGNCC	2 cut(s)	235, 623
RsaI	GTAC	1 cut(s)	140
RsaNI	GTAC	1 cut(s)	139
SaqAI	TTAA	5 cut(s)	176, 248, 257, 516, 579
SatI	GCNGC	1 cut(s)	458
Sau3AI	GATC	3 cut(s)	217, 223, 640
Sau96I	GGNCC	2 cut(s)	235, 623
ScrFI	CCNGG	1 cut(s)	81
SetI	ASST	9 cut(s)	127, 167, 173, 337, 419, 516, 561, 579, 640
SfaNI	GCATC	3 cut(s)	117, 514, 681
SfuI	TTCGAA	1 cut(s)	8
SinI	GGWCC	1 cut(s)	623
SmlI	CTYRAG	1 cut(s)	418
SmoI	CTYRAG	1 cut(s)	418
Sse9I	AATT	5 cut(s)	54, 177, 310, 388, 440
SsiI	CCGC	2 cut(s)	253, 455
StyD4I	CCNGG	1 cut(s)	79
StyI	CCWWGG	1 cut(s)	93
TaaI	ACNGT	2 cut(s)	151, 767
TaiI	ACGT	1 cut(s)	579
TaqI	TCGA	8 cut(s)	8, 111, 210, 293, 347, 406, 425, 696
TasI	AATT	5 cut(s)	54, 177, 310, 388, 440
TatI	WGTACW	1 cut(s)	138
TfiI	GAWTC	3 cut(s)	10, 344, 750
Tru1I	TTAA	5 cut(s)	176, 248, 257, 516, 579
Tru9I	TTAA	5 cut(s)	176, 248, 257, 516, 579
TseFI	GTSAC	1 cut(s)	538
TseI	GCWGC	1 cut(s)	457
Tsp45I	GTSAC	1 cut(s)	538
TspDTI	ATGAA	2 cut(s)	170, 591
VpaK11BI	GGWCC	1 cut(s)	623
XceI	RCATGY	1 cut(s)	677
Zsp2I	ATGCAT	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.