Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0005292

Physical Location & Seq

Genomic Coordinates Reverse (-)

22723210 .. 22723962

Gene Structure 753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g31440.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGATTTCCAATCCGAGTCTTATCTACTACGCCTGCATTGCCCAGAAGGAAACAATCCTCGGCGAGATTGCGAAGGAGCCCGGAATCGGAGCCTTAGCTCAGAAATGCATCGAGAAAACGCCACCGCACCATTCTCTGTACACCCACACCGTCAGGAAACGGACTTACCTGTTCTCAATCGCTGACCCTTTTGTGTTCTTCGGTGTTTTCGATCAAGATCTCGATCAATCGGAGGCGGTTGCGTTCTTGAATCGGTTGCGTTGTGATTTCGAAAGGGTTAAGGGAGATAATGGGGTAGAGGTTGGGTCACATTGTTATCAGGCGGAGTTTGATTCGATTGTGAGGGAGATAATGGCGGCTAATTCGGAGGTGGATATGCCGCCGGCGAGTAGGAATCTGAGTATGGATTCGAGTAGTGGGAAGGGGAAGAGAATGGTACTGGCGCCGCTGCTGGGGAACCATGGGTTGAAGAAGAAGAAGAGATTGTCTGGGGAGGTGAATGGGGAGGTGTGTAAAGATGTGGCGATGAGCGCAACGGAGAAGAAGGTGGATGTGATGTGTGAGGATGGGAGGGATTTTGTAATGCCGGTGGCGCAGAAGAGCGGGGGTTTGGTTTCGAGTGAGAGGCAGAAGGCTAAGCAGGTGTGGAGGAAGCATGTGTGGGTGGTGCTGATGTTGGACTTGTTTGTGTGTGCTGTCTTGTTTGGGGTTTGGTTGTGGGTTTGCAGGGGGTTGAAGTGTATCGACAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

251

Amino Acids

27.85

Weight (kDa)

8.32

Isoelectric Point (pI)

40.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27840 AT5G52990
fragaria_vesca	FvH4_7g31440
malus_domestica	MD01G1217900.v1.1 MD07G1287600.v1.1
prunus_persica	Prupe.2G309300_v2.0.a1
pyrus_communis	pycom01g22800 pycom07g26050
rosa_chinensis	RchiOBHm_Chr1g0359031 RchiOBHm_Chr1g0380501 RchiOBHm_Chr2g0122261
rosa_laevigata	RLG00000026291
rosa_multiflora	Rmu_co8212514.1_g000001 Rmu_sc0001733.1_g000002 Rmu_sc0006267.1_g000010 Rmu_sc0006712.1_g000003 Rmu_sc0021603.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279270
rosa_rugosa	Rorug01G0267400 Rorug01G0421300
rosa_samantha	Rh1AG280600 Rh1AG446400 Rh1BG247600 Rh1BG401600 Rh1CG415900 Rh1DG431800 Rh2BG305100 Rh2CG283500
rosa_wichuraiana	Rw1G038830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	631
Acc36I	ACCTGC	1 cut(s)	631
AccB1I	GGYRCC	1 cut(s)	442
AccBSI	CCGCTC	1 cut(s)	603
AciI	CCGC	7 cut(s)	125, 236, 323, 356, 380, 446, 603
AcyI	GRCGYC	1 cut(s)	443
AfaI	GTAC	2 cut(s)	140, 438
AfiI	CCNNNNNNNGG	2 cut(s)	86, 452
AgsI	TTSAA	3 cut(s)	250, 469, 736
AluBI	AGCT	1 cut(s)	98
AluI	AGCT	1 cut(s)	98
ApeKI	GCWGC	1 cut(s)	448
AspLEI	GCGC	3 cut(s)	445, 533, 595
AsuC2I	CCSGG	1 cut(s)	81
AsuHPI	GGTGA	1 cut(s)	508
AsuII	TTCGAA	1 cut(s)	270
BanI	GGYRCC	1 cut(s)	442
BanII	GRGCYC	1 cut(s)	81
BbvI	GCAGC	1 cut(s)	435
BccI	CCATC	1 cut(s)	560
BcnI	CCSGG	1 cut(s)	81
BfoI	RGCGCY	1 cut(s)	446
BfuAI	ACCTGC	1 cut(s)	631
BglII	AGATCT	1 cut(s)	217
BisI	GCNGC	4 cut(s)	357, 380, 446, 449
BlpI	GCTNAGC	1 cut(s)	636
BlsI	GCNGC	4 cut(s)	358, 381, 447, 450
Bme1390I	CCNGG	1 cut(s)	81
BmiI	GGNNCC	4 cut(s)	78, 91, 444, 458
BmrFI	CCNGG	1 cut(s)	81
BmsI	GCATC	1 cut(s)	117
Bpu10I	CCTNAGC	1 cut(s)	94
Bpu1102I	GCTNAGC	1 cut(s)	636
Bpu14I	TTCGAA	1 cut(s)	270
BpuMI	CCSGG	1 cut(s)	81
BsaBI	GATNNNNATC	2 cut(s)	216, 222
BsaHI	GRCGYC	1 cut(s)	443
BsaJI	CCNNGG	2 cut(s)	58, 460
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 452
Bse118I	RCCGGY	2 cut(s)	382, 586
Bse1I	ACTGG	1 cut(s)	444
Bse3DI	GCAATG	1 cut(s)	36
Bse8I	GATNNNNATC	2 cut(s)	216, 222
BseDI	CCNNGG	2 cut(s)	58, 460
BseGI	GGATG	2 cut(s)	556, 571
BseJI	GATNNNNATC	2 cut(s)	216, 222
BseLI	CCNNNNNNNGG	2 cut(s)	86, 452
BseMI	GCAATG	1 cut(s)	36
BseMII	CTCAG	2 cut(s)	113, 389
BseNI	ACTGG	1 cut(s)	444
BseXI	GCAGC	1 cut(s)	435
BseYI	CCCAGC	1 cut(s)	451
BshNI	GGYRCC	1 cut(s)	442
BsiSI	CCGG	3 cut(s)	81, 383, 587
BslI	CCNNNNNNNGG	2 cut(s)	86, 452
Bsp119I	TTCGAA	1 cut(s)	270
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp1407I	TGTACA	1 cut(s)	138
Bsp143I	GATC	3 cut(s)	211, 217, 223
Bsp1720I	GCTNAGC	1 cut(s)	636
Bsp19I	CCATGG	1 cut(s)	460
BspACI	CCGC	7 cut(s)	125, 236, 323, 356, 380, 446, 603
BspCNI	CTCAG	2 cut(s)	112, 390
BspLI	GGNNCC	4 cut(s)	78, 91, 444, 458
BspMI	ACCTGC	1 cut(s)	631
BspQI	GCTCTTC	1 cut(s)	593
BspT104I	TTCGAA	1 cut(s)	270
BspT107I	GGYRCC	1 cut(s)	442
BsrBI	CCGCTC	1 cut(s)	603
BsrDI	GCAATG	1 cut(s)	36
BsrFI	RCCGGY	2 cut(s)	382, 586
BsrGI	TGTACA	1 cut(s)	138
BsrI	ACTGG	1 cut(s)	444
BssAI	RCCGGY	2 cut(s)	382, 586
BssECI	CCNNGG	2 cut(s)	58, 460
BssMI	GATC	3 cut(s)	211, 217, 223
BssNI	GRCGYC	1 cut(s)	443
BssT1I	CCWWGG	1 cut(s)	460
Bst4CI	ACNGT	2 cut(s)	151, 749
Bst6I	CTCTTC	3 cut(s)	422, 473, 593
BstACI	GRCGYC	1 cut(s)	443
BstAUI	TGTACA	1 cut(s)	138
BstBI	TTCGAA	1 cut(s)	270
BstC8I	GCNNGC	2 cut(s)	34, 384
BstDEI	CTNAG	4 cut(s)	94, 99, 398, 636
BstDSI	CCRYGG	1 cut(s)	460
BstF5I	GGATG	2 cut(s)	556, 571
BstH2I	RGCGCY	1 cut(s)	446
BstHHI	GCGC	3 cut(s)	445, 533, 595
BstKTI	GATC	3 cut(s)	214, 220, 226
BstMBI	GATC	3 cut(s)	211, 217, 223
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 530, 592
BstNSI	RCATGY	1 cut(s)	659
BstSCI	CCNGG	1 cut(s)	79
BstV1I	GCAGC	1 cut(s)	435
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
BtgI	CCRYGG	1 cut(s)	460
BtgZI	GCGATG	1 cut(s)	539
BtsCI	GGATG	2 cut(s)	556, 571
BveI	ACCTGC	1 cut(s)	631
Cac8I	GCNNGC	2 cut(s)	34, 384
CfoI	GCGC	3 cut(s)	445, 533, 595
Cfr10I	RCCGGY	2 cut(s)	382, 586
Csp6I	GTAC	2 cut(s)	139, 437
CviAII	CATG	2 cut(s)	461, 656
CviJI	RGCY	5 cut(s)	79, 92, 98, 359, 635
CviKI_1	RGCY	5 cut(s)	79, 92, 98, 359, 635
CviQI	GTAC	2 cut(s)	139, 437
DdeI	CTNAG	4 cut(s)	94, 99, 398, 636
DinI	GGCGCC	1 cut(s)	444
DpnI	GATC	3 cut(s)	213, 219, 225
DpnII	GATC	3 cut(s)	211, 217, 223
Eam1104I	CTCTTC	3 cut(s)	422, 473, 593
EarI	CTCTTC	3 cut(s)	422, 473, 593
EciI	GGCGGA	1 cut(s)	338
Eco130I	CCWWGG	1 cut(s)	460
Eco24I	GRGCYC	1 cut(s)	81
EcoT14I	CCWWGG	1 cut(s)	460
EcoT22I	ATGCAT	1 cut(s)	110
EcoT38I	GRGCYC	1 cut(s)	81
EgeI	GGCGCC	1 cut(s)	444
EheI	GGCGCC	1 cut(s)	444
ErhI	CCWWGG	1 cut(s)	460
FaeI	CATG	2 cut(s)	464, 659
FaiI	YATR	4 cut(s)	377, 404, 462, 657
FatI	CATG	2 cut(s)	460, 655
FauI	CCCGC	1 cut(s)	596
Fnu4HI	GCNGC	4 cut(s)	357, 380, 446, 449
FokI	GGATG	2 cut(s)	563, 578
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	4 cut(s)	357, 380, 446, 449
GlaI	GCGC	3 cut(s)	444, 532, 594
GluI	GCNGC	4 cut(s)	357, 380, 446, 449
GsaI	CCCAGC	1 cut(s)	455
HaeII	RGCGCY	1 cut(s)	446
HapII	CCGG	3 cut(s)	81, 383, 587
HhaI	GCGC	3 cut(s)	445, 533, 595
Hin1I	GRCGYC	1 cut(s)	443
Hin1II	CATG	2 cut(s)	464, 659
Hin6I	GCGC	3 cut(s)	443, 531, 593
HinP1I	GCGC	3 cut(s)	443, 531, 593
HinfI	GANTC	6 cut(s)	16, 84, 250, 332, 394, 407
HpaII	CCGG	3 cut(s)	81, 383, 587
HphI	GGTGA	1 cut(s)	508
Hpy166II	GTNNAC	1 cut(s)	141
Hpy188I	TCNGA	6 cut(s)	15, 89, 102, 232, 367, 399
Hpy188III	TCNNGA	5 cut(s)	112, 154, 215, 221, 247
Hpy8I	GTNNAC	1 cut(s)	141
HpyAV	CCTTC	5 cut(s)	40, 67, 415, 538, 625
HpyCH4III	ACNGT	2 cut(s)	151, 749
HpyCH4V	TGCA	3 cut(s)	36, 108, 726
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 530, 592
HpyF3I	CTNAG	4 cut(s)	94, 99, 398, 636
Hsp92I	GRCGYC	1 cut(s)	443
Hsp92II	CATG	2 cut(s)	464, 659
HspAI	GCGC	3 cut(s)	443, 531, 593
KasI	GGCGCC	1 cut(s)	442
KroI	GCCGGC	1 cut(s)	382
KroNI	GCCGGC	1 cut(s)	384
Kzo9I	GATC	3 cut(s)	211, 217, 223
LguI	GCTCTTC	1 cut(s)	593
LmnI	GCTCC	2 cut(s)	76, 89
Lsp1109I	GCAGC	1 cut(s)	435
LweI	GCATC	1 cut(s)	117
MaeIII	GTNAC	1 cut(s)	306
MalI	GATC	3 cut(s)	213, 219, 225
MbiI	CCGCTC	1 cut(s)	603
MboI	GATC	3 cut(s)	211, 217, 223
MboII	GAAGA	8 cut(s)	190, 439, 481, 484, 487, 490, 553, 610
MflI	RGATCY	1 cut(s)	217
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	1 cut(s)	361
Mly113I	GGCGCC	1 cut(s)	443
MlyI	GAGTC	1 cut(s)	25
MmeI	TCCRAC	1 cut(s)	657
Mph1103I	ATGCAT	1 cut(s)	110
MreI	CGCCGGCG	1 cut(s)	382
MroNI	GCCGGC	1 cut(s)	382
MseI	TTAA	1 cut(s)	279
MspA1I	CMGCKG	1 cut(s)	448
MspI	CCGG	3 cut(s)	81, 383, 587
MspR9I	CCNGG	1 cut(s)	81
MwoI	GCNNNNNNNGC	3 cut(s)	38, 530, 592
NaeI	GCCGGC	1 cut(s)	384
NarI	GGCGCC	1 cut(s)	443
NciI	CCSGG	1 cut(s)	81
NcoI	CCATGG	1 cut(s)	460
NdeII	GATC	3 cut(s)	211, 217, 223
NgoMIV	GCCGGC	1 cut(s)	382
NlaIII	CATG	2 cut(s)	464, 659
NlaIV	GGNNCC	4 cut(s)	78, 91, 444, 458
NmeAIII	GCCGAG	1 cut(s)	39
NmuCI	GTSAC	1 cut(s)	306
NsiI	ATGCAT	1 cut(s)	110
NspI	RCATGY	1 cut(s)	659
NspV	TTCGAA	1 cut(s)	270
PaqCI	CACCTGC	1 cut(s)	631
PciSI	GCTCTTC	1 cut(s)	593
PcsI	WCGNNNNNNNCGW	1 cut(s)	207
PdiI	GCCGGC	1 cut(s)	384
PfeI	GAWTC	5 cut(s)	84, 250, 332, 394, 407
PkrI	GCNGC	4 cut(s)	358, 381, 447, 450
PleI	GAGTC	1 cut(s)	24
PluTI	GGCGCC	1 cut(s)	446
PpsI	GAGTC	1 cut(s)	24
PspFI	CCCAGC	1 cut(s)	451
PspN4I	GGNNCC	4 cut(s)	78, 91, 444, 458
PsuI	RGATCY	1 cut(s)	217
RsaI	GTAC	2 cut(s)	140, 438
RsaNI	GTAC	2 cut(s)	139, 437
SapI	GCTCTTC	1 cut(s)	593
SaqAI	TTAA	1 cut(s)	279
SatI	GCNGC	4 cut(s)	357, 380, 446, 449
Sau3AI	GATC	3 cut(s)	211, 217, 223
SchI	GAGTC	1 cut(s)	25
ScrFI	CCNGG	1 cut(s)	81
SduI	GDGCHC	1 cut(s)	81
SetI	ASST	8 cut(s)	100, 171, 303, 372, 498, 510, 549, 645
SfaNI	GCATC	1 cut(s)	117
SfoI	GGCGCC	1 cut(s)	444
SfuI	TTCGAA	1 cut(s)	270
SgrAI	CRCCGGYG	1 cut(s)	382
Sse9I	AATT	1 cut(s)	361
SsiI	CCGC	7 cut(s)	125, 236, 323, 356, 380, 446, 603
SspDI	GGCGCC	1 cut(s)	442
StyD4I	CCNGG	1 cut(s)	79
StyI	CCWWGG	1 cut(s)	460
TaaI	ACNGT	2 cut(s)	151, 749
TaqI	TCGA	8 cut(s)	111, 210, 222, 270, 335, 410, 617, 744
TasI	AATT	1 cut(s)	361
TatI	WGTACW	1 cut(s)	138
TauI	GCSGC	3 cut(s)	359, 382, 448
TfiI	GAWTC	5 cut(s)	84, 250, 332, 394, 407
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TseFI	GTSAC	1 cut(s)	306
TseI	GCWGC	1 cut(s)	448
Tsp45I	GTSAC	1 cut(s)	306
TspGWI	ACGGA	2 cut(s)	175, 551
XceI	RCATGY	1 cut(s)	659
Zsp2I	ATGCAT	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.