Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0005292

Physical Location & Seq

Genomic Coordinates Reverse (-)

52560143 .. 52560898

Gene Structure 756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG401600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGATTTCGAATCCGGGTCTGGTGTACTACGCCTGCATTGCCCAGAAGGAAACGATTCTCGGCGAGATTGCGAAGGAGCCCGGAATCGGAGCCCTAGCTCAGAAATGCATTGCGAAAACCCCACTGCACCACTCCCTGTACACCCACACCGTCAGAAGGCGGACCTACGTGTTCTTGGTCGTCGACCCTTTTGTGTTCTTCGGCATTTTCGATCAAGATCTCGATCAGTCCGAGGCGCTTTCGTTCTTGAATCGATTGAGATGCGATTTCGAGAAGGTGAATGGAGTTGGGTCGGTCTTGGATGGAGGAGATTTCGAATCGCATTGTTTTCAAGCTGAGTTTGATTCGATTATGAGGGAGGTGATGGCGTCGGAGATGGATTCGGCGCCGGCGAGCCGGAATCTGAGCATGGATTCGAGTAGTAGTAAAGGGAAGAAATTGGTGCTGGCGCCGCTGCTGGGGAACCAGGGGTTGAAGAAGAAGAAGAGATTGTCTGGGGAGGTGAATGGGGAGCCGTGCAAAGATGTGGTGATGAGCACGATGGAGAAGAAGCTGGATGTGGGTGGTGAGGATGGAAGGGATTTCGCAATGCCGGCGCTGAAGAGTGGGGGTTTGCATCCGTGTGAGCGGCAGAAGGCCAAGCAGGTGTGGAGGAGGCATGTGTGGGTGGTGCTGGTGCTGGACTTGTTCGTGTGTGCCGTCTTGTTTGGGGTTTGGTTGTGGGTTTGTGGGGGGTTTAAGTGCATCGATAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

251

Amino Acids

27.81

Weight (kDa)

7.55

Isoelectric Point (pI)

40.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27840 AT5G52990
fragaria_vesca	FvH4_7g31440
malus_domestica	MD01G1217900.v1.1 MD07G1287600.v1.1
prunus_persica	Prupe.2G309300_v2.0.a1
pyrus_communis	pycom01g22800 pycom07g26050
rosa_chinensis	RchiOBHm_Chr1g0359031 RchiOBHm_Chr1g0380501 RchiOBHm_Chr2g0122261
rosa_laevigata	RLG00000026291
rosa_multiflora	Rmu_co8212514.1_g000001 Rmu_sc0001733.1_g000002 Rmu_sc0006267.1_g000010 Rmu_sc0006712.1_g000003 Rmu_sc0021603.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279270
rosa_rugosa	Rorug01G0267400 Rorug01G0421300
rosa_samantha	Rh1AG280600 Rh1AG446400 Rh1BG247600 Rh1BG401600 Rh1CG415900 Rh1DG431800 Rh2BG305100 Rh2CG283500
rosa_wichuraiana	Rw1G038830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	634
Acc36I	ACCTGC	1 cut(s)	634
AccB1I	GGYRCC	2 cut(s)	385, 448
AccBSI	CCGCTC	1 cut(s)	628
AccI	GTMKAC	1 cut(s)	183
AciI	CCGC	3 cut(s)	160, 452, 628
AcuI	CTGAAG	1 cut(s)	620
AcyI	GRCGYC	3 cut(s)	368, 386, 449
AfaI	GTAC	2 cut(s)	26, 140
AfiI	CCNNNNNNNGG	3 cut(s)	86, 156, 458
AflIII	ACRYGT	1 cut(s)	168
AgsI	TTSAA	3 cut(s)	250, 332, 475
AjnI	CCWGG	1 cut(s)	465
AluBI	AGCT	3 cut(s)	98, 335, 553
AluI	AGCT	3 cut(s)	98, 335, 553
Alw21I	GWGCWC	1 cut(s)	539
AoxI	GGCC	1 cut(s)	636
ApeKI	GCWGC	1 cut(s)	454
Asp700I	GAANNNNTTC	1 cut(s)	54
AspLEI	GCGC	4 cut(s)	238, 388, 451, 598
AspS9I	GGNCC	1 cut(s)	162
AsuC2I	CCSGG	2 cut(s)	15, 81
AsuHPI	GGTGA	5 cut(s)	289, 373, 514, 541, 578
AsuII	TTCGAA	2 cut(s)	8, 315
AvaII	GGWCC	1 cut(s)	162
BanI	GGYRCC	2 cut(s)	385, 448
BanII	GRGCYC	2 cut(s)	81, 94
Bbv12I	GWGCWC	1 cut(s)	539
BbvI	GCAGC	1 cut(s)	441
BccI	CCATC	5 cut(s)	296, 358, 370, 535, 566
BceAI	ACGGC	2 cut(s)	499, 683
BcgI	CGANNNNNNTGC	2 cut(s)	243, 277
BciT130I	CCWGG	1 cut(s)	467
BcnI	CCSGG	2 cut(s)	15, 81
BfaI	CTAG	1 cut(s)	95
BfoI	RGCGCY	4 cut(s)	239, 389, 452, 599
BfuAI	ACCTGC	1 cut(s)	634
BglII	AGATCT	1 cut(s)	217
BisI	GCNGC	3 cut(s)	452, 455, 629
BlsI	GCNGC	3 cut(s)	453, 456, 630
Bme1390I	CCNGG	3 cut(s)	15, 81, 467
Bme18I	GGWCC	1 cut(s)	162
BmgT120I	GGNCC	1 cut(s)	162
BmiI	GGNNCC	6 cut(s)	78, 91, 387, 450, 464, 513
BmrFI	CCNGG	3 cut(s)	15, 81, 467
BmsI	GCATC	2 cut(s)	251, 625
Bpu14I	TTCGAA	2 cut(s)	8, 315
BpuMI	CCSGG	2 cut(s)	15, 81
Bsa29I	ATCGAT	2 cut(s)	253, 747
BsaAI	YACGTR	1 cut(s)	169
BsaBI	GATNNNNATC	2 cut(s)	216, 222
BsaHI	GRCGYC	3 cut(s)	368, 386, 449
BsaJI	CCNNGG	2 cut(s)	231, 466
Bsc4I	CCNNNNNNNGG	3 cut(s)	86, 156, 458
Bse118I	RCCGGY	2 cut(s)	388, 592
Bse3DI	GCAATG	3 cut(s)	36, 108, 594
Bse8I	GATNNNNATC	2 cut(s)	216, 222
BseBI	CCWGG	1 cut(s)	467
BseCI	ATCGAT	2 cut(s)	253, 747
BseDI	CCNNGG	2 cut(s)	231, 466
BseGI	GGATG	4 cut(s)	307, 562, 577, 616
BseJI	GATNNNNATC	2 cut(s)	216, 222
BseLI	CCNNNNNNNGG	3 cut(s)	86, 156, 458
BseMI	GCAATG	3 cut(s)	36, 108, 594
BseMII	CTCAG	3 cut(s)	113, 327, 395
BseRI	GAGGAG	2 cut(s)	321, 667
BseXI	GCAGC	1 cut(s)	441
BseYI	CCCAGC	1 cut(s)	457
BsgI	GTGCAG	1 cut(s)	110
BshFI	GGCC	1 cut(s)	638
BshNI	GGYRCC	2 cut(s)	385, 448
BshVI	ATCGAT	2 cut(s)	253, 747
BsiHKAI	GWGCWC	1 cut(s)	539
BsiSI	CCGG	5 cut(s)	14, 81, 389, 397, 593
BslI	CCNNNNNNNGG	3 cut(s)	86, 156, 458
BsnI	GGCC	1 cut(s)	638
Bsp119I	TTCGAA	2 cut(s)	8, 315
Bsp1286I	GDGCHC	3 cut(s)	81, 94, 539
Bsp1407I	TGTACA	1 cut(s)	138
Bsp143I	GATC	3 cut(s)	211, 217, 223
BspACI	CCGC	3 cut(s)	160, 452, 628
BspANI	GGCC	1 cut(s)	638
BspCNI	CTCAG	3 cut(s)	112, 328, 396
BspDI	ATCGAT	2 cut(s)	253, 747
BspLI	GGNNCC	6 cut(s)	78, 91, 387, 450, 464, 513
BspMI	ACCTGC	1 cut(s)	634
BspT104I	TTCGAA	2 cut(s)	8, 315
BspT107I	GGYRCC	2 cut(s)	385, 448
BsrBI	CCGCTC	1 cut(s)	628
BsrDI	GCAATG	3 cut(s)	36, 108, 594
BsrFI	RCCGGY	2 cut(s)	388, 592
BsrGI	TGTACA	1 cut(s)	138
BssAI	RCCGGY	2 cut(s)	388, 592
BssECI	CCNNGG	2 cut(s)	231, 466
BssMI	GATC	3 cut(s)	211, 217, 223
BssNI	GRCGYC	3 cut(s)	368, 386, 449
Bst2UI	CCWGG	1 cut(s)	467
Bst4CI	ACNGT	1 cut(s)	151
Bst6I	CTCTTC	2 cut(s)	479, 596
BstACI	GRCGYC	3 cut(s)	368, 386, 449
BstAUI	TGTACA	1 cut(s)	138
BstBAI	YACGTR	1 cut(s)	169
BstBI	TTCGAA	2 cut(s)	8, 315
BstC8I	GCNNGC	5 cut(s)	34, 390, 394, 447, 594
BstDEI	CTNAG	3 cut(s)	99, 336, 404
BstF5I	GGATG	4 cut(s)	307, 562, 577, 616
BstH2I	RGCGCY	4 cut(s)	239, 389, 452, 599
BstHHI	GCGC	4 cut(s)	238, 388, 451, 598
BstKTI	GATC	3 cut(s)	214, 220, 226
BstMBI	GATC	3 cut(s)	211, 217, 223
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 451, 593
BstNI	CCWGG	1 cut(s)	467
BstNSI	RCATGY	1 cut(s)	662
BstSCI	CCNGG	3 cut(s)	13, 79, 465
BstV1I	GCAGC	1 cut(s)	441
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
Bsu15I	ATCGAT	2 cut(s)	253, 747
BsuRI	GGCC	1 cut(s)	638
BsuTUI	ATCGAT	2 cut(s)	253, 747
BtsCI	GGATG	4 cut(s)	307, 562, 577, 616
BtsI	GCAGTG	1 cut(s)	122
BtsIMutI	CAGTG	1 cut(s)	122
BveI	ACCTGC	1 cut(s)	634
Cac8I	GCNNGC	5 cut(s)	34, 390, 394, 447, 594
CfoI	GCGC	4 cut(s)	238, 388, 451, 598
Cfr10I	RCCGGY	2 cut(s)	388, 592
Cfr13I	GGNCC	1 cut(s)	162
ClaI	ATCGAT	2 cut(s)	253, 747
CseI	GACGC	1 cut(s)	357
Csp6I	GTAC	2 cut(s)	25, 139
CviAII	CATG	2 cut(s)	409, 659
CviJI	RGCY	8 cut(s)	79, 92, 98, 335, 396, 514, 553, 638
CviKI_1	RGCY	8 cut(s)	79, 92, 98, 335, 396, 514, 553, 638
CviQI	GTAC	2 cut(s)	25, 139
DdeI	CTNAG	3 cut(s)	99, 336, 404
DinI	GGCGCC	2 cut(s)	387, 450
DpnI	GATC	3 cut(s)	213, 219, 225
DpnII	GATC	3 cut(s)	211, 217, 223
Eam1104I	CTCTTC	2 cut(s)	479, 596
EarI	CTCTTC	2 cut(s)	479, 596
EciI	GGCGGA	1 cut(s)	175
Eco24I	GRGCYC	2 cut(s)	81, 94
Eco47I	GGWCC	1 cut(s)	162
Eco57I	CTGAAG	1 cut(s)	620
EcoRII	CCWGG	1 cut(s)	465
EcoT22I	ATGCAT	1 cut(s)	110
EcoT38I	GRGCYC	2 cut(s)	81, 94
EgeI	GGCGCC	2 cut(s)	387, 450
EheI	GGCGCC	2 cut(s)	387, 450
FaeI	CATG	2 cut(s)	412, 662
FaiI	YATR	3 cut(s)	353, 410, 660
FatI	CATG	2 cut(s)	408, 658
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	3 cut(s)	452, 455, 629
FokI	GGATG	4 cut(s)	314, 569, 584, 603
FriOI	GRGCYC	2 cut(s)	81, 94
Fsp4HI	GCNGC	3 cut(s)	452, 455, 629
FspBI	CTAG	1 cut(s)	95
GlaI	GCGC	4 cut(s)	237, 387, 450, 597
GluI	GCNGC	3 cut(s)	452, 455, 629
GsaI	CCCAGC	1 cut(s)	461
HaeII	RGCGCY	4 cut(s)	239, 389, 452, 599
HaeIII	GGCC	1 cut(s)	638
HapII	CCGG	5 cut(s)	14, 81, 389, 397, 593
HgaI	GACGC	1 cut(s)	357
HhaI	GCGC	4 cut(s)	238, 388, 451, 598
Hin1I	GRCGYC	3 cut(s)	368, 386, 449
Hin1II	CATG	2 cut(s)	412, 662
Hin6I	GCGC	4 cut(s)	236, 386, 449, 596
HinP1I	GCGC	4 cut(s)	236, 386, 449, 596
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HinfI	GANTC	9 cut(s)	10, 55, 84, 250, 317, 344, 380, 400, 413
HpaII	CCGG	5 cut(s)	14, 81, 389, 397, 593
HphI	GGTGA	5 cut(s)	289, 373, 514, 541, 578
Hpy166II	GTNNAC	3 cut(s)	25, 141, 184
Hpy188I	TCNGA	6 cut(s)	89, 102, 155, 232, 373, 405
Hpy188III	TCNNGA	4 cut(s)	215, 221, 247, 271
Hpy8I	GTNNAC	3 cut(s)	25, 141, 184
Hpy99I	CGWCG	2 cut(s)	185, 373
HpyAV	CCTTC	6 cut(s)	40, 67, 150, 268, 570, 628
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	6 cut(s)	36, 108, 127, 519, 616, 744
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 451, 593
HpyF3I	CTNAG	3 cut(s)	99, 336, 404
HpySE526I	ACGT	1 cut(s)	168
Hsp92I	GRCGYC	3 cut(s)	368, 386, 449
Hsp92II	CATG	2 cut(s)	412, 662
HspAI	GCGC	4 cut(s)	236, 386, 449, 596
KasI	GGCGCC	2 cut(s)	385, 448
KroI	GCCGGC	2 cut(s)	388, 592
KroNI	GCCGGC	2 cut(s)	390, 594
Kzo9I	GATC	3 cut(s)	211, 217, 223
LmnI	GCTCC	3 cut(s)	76, 89, 511
Lsp1109I	GCAGC	1 cut(s)	441
LweI	GCATC	2 cut(s)	251, 625
MaeI	CTAG	1 cut(s)	95
MaeII	ACGT	1 cut(s)	168
MalI	GATC	3 cut(s)	213, 219, 225
MbiI	CCGCTC	1 cut(s)	628
MboI	GATC	3 cut(s)	211, 217, 223
MboII	GAAGA	8 cut(s)	190, 445, 487, 490, 493, 496, 559, 613
MflI	RGATCY	1 cut(s)	217
MhlI	GDGCHC	3 cut(s)	81, 94, 539
MluCI	AATT	1 cut(s)	437
Mly113I	GGCGCC	2 cut(s)	386, 449
MmeI	TCCRAC	1 cut(s)	351
MnlI	CCTC	8 cut(s)	226, 299, 348, 352, 493, 562, 645, 648
Mph1103I	ATGCAT	1 cut(s)	110
MreI	CGCCGGCG	1 cut(s)	388
MroNI	GCCGGC	2 cut(s)	388, 592
MroXI	GAANNNNTTC	1 cut(s)	54
MseI	TTAA	1 cut(s)	738
MslI	CAYNNNNRTG	1 cut(s)	621
MspA1I	CMGCKG	1 cut(s)	454
MspI	CCGG	5 cut(s)	14, 81, 389, 397, 593
MspR9I	CCNGG	3 cut(s)	15, 81, 467
MvaI	CCWGG	1 cut(s)	467
MwoI	GCNNNNNNNGC	3 cut(s)	38, 451, 593
NaeI	GCCGGC	2 cut(s)	390, 594
NarI	GGCGCC	2 cut(s)	386, 449
NciI	CCSGG	2 cut(s)	15, 81
NdeII	GATC	3 cut(s)	211, 217, 223
NgoMIV	GCCGGC	2 cut(s)	388, 592
NlaIII	CATG	2 cut(s)	412, 662
NlaIV	GGNNCC	6 cut(s)	78, 91, 387, 450, 464, 513
NmeAIII	GCCGAG	1 cut(s)	39
NsiI	ATGCAT	1 cut(s)	110
NspI	RCATGY	1 cut(s)	662
NspV	TTCGAA	2 cut(s)	8, 315
PaqCI	CACCTGC	1 cut(s)	634
PcsI	WCGNNNNNNNCGW	4 cut(s)	207, 228, 389, 696
PdiI	GCCGGC	2 cut(s)	390, 594
PdmI	GAANNNNTTC	1 cut(s)	54
PfeI	GAWTC	9 cut(s)	10, 55, 84, 250, 317, 344, 380, 400, 413
PkrI	GCNGC	3 cut(s)	453, 456, 630
PluTI	GGCGCC	2 cut(s)	389, 452
Ppu21I	YACGTR	1 cut(s)	169
Psp6I	CCWGG	1 cut(s)	465
PspFI	CCCAGC	1 cut(s)	457
PspGI	CCWGG	1 cut(s)	465
PspN4I	GGNNCC	6 cut(s)	78, 91, 387, 450, 464, 513
PspPI	GGNCC	1 cut(s)	162
PsuI	RGATCY	1 cut(s)	217
RsaI	GTAC	2 cut(s)	26, 140
RsaNI	GTAC	2 cut(s)	25, 139
RseI	CAYNNNNRTG	1 cut(s)	621
SalI	GTCGAC	1 cut(s)	182
SaqAI	TTAA	1 cut(s)	738
SatI	GCNGC	3 cut(s)	452, 455, 629
Sau3AI	GATC	3 cut(s)	211, 217, 223
Sau96I	GGNCC	1 cut(s)	162
ScrFI	CCNGG	3 cut(s)	15, 81, 467
SduI	GDGCHC	3 cut(s)	81, 94, 539
SetI	ASST	9 cut(s)	100, 167, 171, 279, 337, 363, 504, 555, 648
SfaNI	GCATC	2 cut(s)	251, 625
SfoI	GGCGCC	2 cut(s)	387, 450
SfuI	TTCGAA	2 cut(s)	8, 315
SgrAI	CRCCGGYG	1 cut(s)	388
SinI	GGWCC	1 cut(s)	162
SmiMI	CAYNNNNRTG	1 cut(s)	621
Sse9I	AATT	1 cut(s)	437
SsiI	CCGC	3 cut(s)	160, 452, 628
SspDI	GGCGCC	2 cut(s)	385, 448
SspMI	CTAG	1 cut(s)	95
StyD4I	CCNGG	3 cut(s)	13, 79, 465
TaaI	ACNGT	1 cut(s)	151
TaiI	ACGT	1 cut(s)	171
TaqII	GACCGA	1 cut(s)	283
TasI	AATT	1 cut(s)	437
TatI	WGTACW	2 cut(s)	24, 138
TauI	GCSGC	2 cut(s)	454, 631
TfiI	GAWTC	9 cut(s)	10, 55, 84, 250, 317, 344, 380, 400, 413
Tru1I	TTAA	1 cut(s)	738
Tru9I	TTAA	1 cut(s)	738
TscAI	CASTG	1 cut(s)	129
TseI	GCWGC	1 cut(s)	454
TspGWI	ACGGA	1 cut(s)	609
TspRI	CASTG	1 cut(s)	129
VpaK11BI	GGWCC	1 cut(s)	162
XceI	RCATGY	1 cut(s)	662
XmiI	GTMKAC	1 cut(s)	183
XmnI	GAANNNNTTC	1 cut(s)	54
XspI	CTAG	1 cut(s)	95
Zsp2I	ATGCAT	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.