Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0005292

Physical Location & Seq

Genomic Coordinates Reverse (-)

34903229 .. 34903996

Gene Structure 768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1287600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGATTTCGAATCCGGATCTGATTTTCTACGCCTGCATTGCCCACAAGGTCATGATTCTCGGCGAGTTTTCGAAAGAGCCGGGTCTCGGAAAGTTAGCGCAGCAATGCGTGGAGGTAGCCCCTCCCCATCATTCCATGTTCAGTCACACGGTAAGAAAAAAGACTTACATTTTCTCATTTCATGACCCTTTTGTGTATTTCGCTATCTCCGATGCCGATCTCGATGACTCCGAGGCGCTTTCGTTCTTAAACCAGTTGAAATCCGGTTTTGAGGATGTTACTGGAAGTGGGTCGATCTTGGTTCGGGATAATTTTGCCCCCAATTGCTTGCAAGTCCAGTTTGATTCGATTATTCGAAAAGTAATGGCCTCGGACTTGCCCAATTCGCCGGCAGCCAGTCGGAATCTAAGCTTTGGTGCGAGTAAAGGGAAGAAAATGGTGCTGACACCGCTGCTTGGGAAGAATCCGAGCGAAGGGTTGAAGAAGAAGACGAGGTTATCTGGGGAGGTTAATGACGATCTTTGCAAAGATGTGACTGCAAAGGAGAAGAAGGTGGATCTGTGTGATGATGCTAATGGCGGCGGGTTTAGAGATTTTCCGTTGCCAACACAAAAGAGTGGTCTTTTGCATTCGGGTGACCGCCAAAAGGCCAAGCAAGTTTGGACGAGGCATGTTTGGGTTGTTTTGATCCTTGACTTGTTTGTTTGCGCCGTGTTGTTTGGGATTTGGTTGTGGGTTTGCAGGGGATTCAAGTGCATTGACAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

256

Amino Acids

28.26

Weight (kDa)

8.36

Isoelectric Point (pI)

28.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27840 AT5G52990
fragaria_vesca	FvH4_7g31440
malus_domestica	MD01G1217900.v1.1 MD07G1287600.v1.1
prunus_persica	Prupe.2G309300_v2.0.a1
pyrus_communis	pycom01g22800 pycom07g26050
rosa_chinensis	RchiOBHm_Chr1g0359031 RchiOBHm_Chr1g0380501 RchiOBHm_Chr2g0122261
rosa_laevigata	RLG00000026291
rosa_multiflora	Rmu_co8212514.1_g000001 Rmu_sc0001733.1_g000002 Rmu_sc0006267.1_g000010 Rmu_sc0006712.1_g000003 Rmu_sc0021603.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279270
rosa_rugosa	Rorug01G0267400 Rorug01G0421300
rosa_samantha	Rh1AG280600 Rh1AG446400 Rh1BG247600 Rh1BG401600 Rh1CG415900 Rh1DG431800 Rh2BG305100 Rh2CG283500
rosa_wichuraiana	Rw1G038830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	13
AciI	CCGC	4 cut(s)	449, 579, 582, 640
AclWI	GGATC	3 cut(s)	24, 564, 682
AfiI	CCNNNNNNNGG	4 cut(s)	86, 455, 473, 646
AgsI	TTSAA	3 cut(s)	259, 481, 751
AluBI	AGCT	1 cut(s)	411
AluI	AGCT	1 cut(s)	411
Alw26I	GTCTC	1 cut(s)	89
AlwI	GGATC	3 cut(s)	24, 564, 682
Aor13HI	TCCGGA	1 cut(s)	13
AoxI	GGCC	2 cut(s)	366, 648
ApeKI	GCWGC	3 cut(s)	100, 392, 451
ArsI	GACNNNNNNTTYG	2 cut(s)	604, 636
AspLEI	GCGC	3 cut(s)	100, 238, 710
AsuC2I	CCSGG	1 cut(s)	81
AsuHPI	GGTGA	1 cut(s)	647
AsuII	TTCGAA	3 cut(s)	8, 71, 355
BbsI	GAAGAC	1 cut(s)	494
BbvI	GCAGC	3 cut(s)	112, 404, 438
BccI	CCATC	1 cut(s)	135
BceAI	ACGGC	1 cut(s)	695
BcnI	CCSGG	1 cut(s)	81
BcoDI	GTCTC	1 cut(s)	89
BfoI	RGCGCY	1 cut(s)	239
BisI	GCNGC	4 cut(s)	101, 393, 452, 580
BlsI	GCNGC	4 cut(s)	102, 394, 453, 581
Bme1390I	CCNGG	1 cut(s)	81
BmrFI	CCNGG	1 cut(s)	81
BmsI	GCATC	2 cut(s)	202, 559
BpiI	GAAGAC	1 cut(s)	494
Bpu14I	TTCGAA	3 cut(s)	8, 71, 355
BpuMI	CCSGG	1 cut(s)	81
BsaBI	GATNNNNATC	1 cut(s)	216
BsaI	GGTCTC	1 cut(s)	89
BsaJI	CCNNGG	2 cut(s)	231, 369
BsaWI	WCCGGW	2 cut(s)	13, 263
Bsc4I	CCNNNNNNNGG	4 cut(s)	86, 455, 473, 646
Bse118I	RCCGGY	1 cut(s)	388
Bse1I	ACTGG	4 cut(s)	253, 286, 337, 396
Bse3DI	GCAATG	2 cut(s)	36, 110
Bse8I	GATNNNNATC	1 cut(s)	216
BseAI	TCCGGA	1 cut(s)	13
BseDI	CCNNGG	2 cut(s)	231, 369
BseGI	GGATG	1 cut(s)	280
BseJI	GATNNNNATC	1 cut(s)	216
BseLI	CCNNNNNNNGG	4 cut(s)	86, 455, 473, 646
BseMI	GCAATG	2 cut(s)	36, 110
BseNI	ACTGG	4 cut(s)	253, 286, 337, 396
BseXI	GCAGC	3 cut(s)	112, 404, 438
BshFI	GGCC	2 cut(s)	368, 650
BsiSI	CCGG	4 cut(s)	14, 80, 264, 389
BslI	CCNNNNNNNGG	4 cut(s)	86, 455, 473, 646
BsmAI	GTCTC	1 cut(s)	89
BsmI	GAATGC	1 cut(s)	628
BsnI	GGCC	2 cut(s)	368, 650
Bso31I	GGTCTC	1 cut(s)	89
Bsp119I	TTCGAA	3 cut(s)	8, 71, 355
Bsp13I	TCCGGA	1 cut(s)	13
Bsp143I	GATC	6 cut(s)	16, 217, 294, 517, 556, 687
BspACI	CCGC	4 cut(s)	449, 579, 582, 640
BspANI	GGCC	2 cut(s)	368, 650
BspEI	TCCGGA	1 cut(s)	13
BspHI	TCATGA	2 cut(s)	51, 181
BspPI	GGATC	3 cut(s)	24, 564, 682
BspT104I	TTCGAA	3 cut(s)	8, 71, 355
BspTNI	GGTCTC	1 cut(s)	89
BsrDI	GCAATG	2 cut(s)	36, 110
BsrFI	RCCGGY	1 cut(s)	388
BsrI	ACTGG	4 cut(s)	253, 286, 337, 396
BssAI	RCCGGY	1 cut(s)	388
BssECI	CCNNGG	2 cut(s)	231, 369
BssMI	GATC	6 cut(s)	16, 217, 294, 517, 556, 687
Bst4CI	ACNGT	2 cut(s)	151, 764
BstBI	TTCGAA	3 cut(s)	8, 71, 355
BstC8I	GCNNGC	3 cut(s)	34, 329, 390
BstDEI	CTNAG	1 cut(s)	407
BstEII	GGTNACC	1 cut(s)	635
BstF5I	GGATG	1 cut(s)	280
BstH2I	RGCGCY	1 cut(s)	239
BstHHI	GCGC	3 cut(s)	100, 238, 710
BstKTI	GATC	6 cut(s)	19, 220, 297, 520, 559, 690
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	6 cut(s)	16, 217, 294, 517, 556, 687
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 385, 448
BstNSI	RCATGY	1 cut(s)	674
BstPI	GGTNACC	1 cut(s)	635
BstSCI	CCNGG	1 cut(s)	79
BstV1I	GCAGC	3 cut(s)	112, 404, 438
BstV2I	GAAGAC	1 cut(s)	494
BstX2I	RGATCY	2 cut(s)	16, 556
BstYI	RGATCY	2 cut(s)	16, 556
BsuRI	GGCC	2 cut(s)	368, 650
BtsCI	GGATG	1 cut(s)	280
Cac8I	GCNNGC	3 cut(s)	34, 329, 390
CciI	TCATGA	2 cut(s)	51, 181
CfoI	GCGC	3 cut(s)	100, 238, 710
Cfr10I	RCCGGY	1 cut(s)	388
CviAII	CATG	4 cut(s)	52, 136, 182, 671
CviJI	RGCY	6 cut(s)	79, 119, 368, 395, 411, 650
CviKI_1	RGCY	6 cut(s)	79, 119, 368, 395, 411, 650
DdeI	CTNAG	1 cut(s)	407
DpnI	GATC	6 cut(s)	18, 219, 296, 519, 558, 689
DpnII	GATC	6 cut(s)	16, 217, 294, 517, 556, 687
Eco31I	GGTCTC	1 cut(s)	89
Eco91I	GGTNACC	1 cut(s)	635
EcoO65I	GGTNACC	1 cut(s)	635
FaeI	CATG	4 cut(s)	55, 139, 185, 674
FaiI	YATR	4 cut(s)	53, 137, 183, 672
FatI	CATG	4 cut(s)	51, 135, 181, 670
FauI	CCCGC	1 cut(s)	575
Fnu4HI	GCNGC	4 cut(s)	101, 393, 452, 580
FokI	GGATG	1 cut(s)	287
Fsp4HI	GCNGC	4 cut(s)	101, 393, 452, 580
GlaI	GCGC	3 cut(s)	99, 237, 709
GluI	GCNGC	4 cut(s)	101, 393, 452, 580
HaeII	RGCGCY	1 cut(s)	239
HaeIII	GGCC	2 cut(s)	368, 650
HapII	CCGG	4 cut(s)	14, 80, 264, 389
HhaI	GCGC	3 cut(s)	100, 238, 710
Hin1II	CATG	4 cut(s)	55, 139, 185, 674
Hin6I	GCGC	3 cut(s)	98, 236, 708
HinP1I	GCGC	3 cut(s)	98, 236, 708
HindIII	AAGCTT	1 cut(s)	409
HinfI	GANTC	7 cut(s)	10, 55, 227, 344, 403, 463, 747
HpaII	CCGG	4 cut(s)	14, 80, 264, 389
HphI	GGTGA	1 cut(s)	647
Hpy188I	TCNGA	7 cut(s)	21, 89, 211, 232, 373, 402, 468
Hpy188III	TCNNGA	5 cut(s)	14, 52, 182, 221, 305
HpyAV	CCTTC	2 cut(s)	467, 544
HpyCH4III	ACNGT	2 cut(s)	151, 764
HpyCH4V	TGCA	7 cut(s)	36, 331, 525, 539, 628, 741, 756
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 385, 448
HpyF3I	CTNAG	1 cut(s)	407
Hsp92II	CATG	4 cut(s)	55, 139, 185, 674
HspAI	GCGC	3 cut(s)	98, 236, 708
Kpn2I	TCCGGA	1 cut(s)	13
KroI	GCCGGC	1 cut(s)	388
KroNI	GCCGGC	1 cut(s)	390
Kzo9I	GATC	6 cut(s)	16, 217, 294, 517, 556, 687
Lsp1109I	GCAGC	3 cut(s)	112, 404, 438
LweI	GCATC	2 cut(s)	202, 559
MaeIII	GTNAC	4 cut(s)	143, 277, 532, 635
MalI	GATC	6 cut(s)	18, 219, 296, 519, 558, 689
MboI	GATC	6 cut(s)	16, 217, 294, 517, 556, 687
MboII	GAAGA	6 cut(s)	442, 472, 493, 496, 499, 559
MfeI	CAATTG	1 cut(s)	322
MflI	RGATCY	2 cut(s)	16, 556
MluCI	AATT	3 cut(s)	310, 322, 382
MlyI	GAGTC	1 cut(s)	221
MmeI	TCCRAC	1 cut(s)	380
MnlI	CCTC	8 cut(s)	106, 132, 226, 265, 379, 486, 499, 660
MroI	TCCGGA	1 cut(s)	13
MroNI	GCCGGC	1 cut(s)	388
MseI	TTAA	2 cut(s)	248, 510
MslI	CAYNNNNRTG	1 cut(s)	633
MspA1I	CMGCKG	1 cut(s)	451
MspI	CCGG	4 cut(s)	14, 80, 264, 389
MspR9I	CCNGG	1 cut(s)	81
MunI	CAATTG	1 cut(s)	322
Mva1269I	GAATGC	1 cut(s)	628
MwoI	GCNNNNNNNGC	3 cut(s)	38, 385, 448
NaeI	GCCGGC	1 cut(s)	390
NciI	CCSGG	1 cut(s)	81
NdeII	GATC	6 cut(s)	16, 217, 294, 517, 556, 687
NgoMIV	GCCGGC	1 cut(s)	388
NlaIII	CATG	4 cut(s)	55, 139, 185, 674
NmeAIII	GCCGAG	1 cut(s)	39
NmuCI	GTSAC	3 cut(s)	143, 532, 635
NspI	RCATGY	1 cut(s)	674
NspV	TTCGAA	3 cut(s)	8, 71, 355
PagI	TCATGA	2 cut(s)	51, 181
PcsI	WCGNNNNNNNCGW	2 cut(s)	207, 228
PctI	GAATGC	1 cut(s)	628
PdiI	GCCGGC	1 cut(s)	390
PfeI	GAWTC	6 cut(s)	10, 55, 344, 403, 463, 747
PkrI	GCNGC	4 cut(s)	102, 394, 453, 581
PleI	GAGTC	1 cut(s)	221
PpsI	GAGTC	1 cut(s)	221
PspEI	GGTNACC	1 cut(s)	635
PsuI	RGATCY	2 cut(s)	16, 556
RseI	CAYNNNNRTG	1 cut(s)	633
SaqAI	TTAA	2 cut(s)	248, 510
SatI	GCNGC	4 cut(s)	101, 393, 452, 580
Sau3AI	GATC	6 cut(s)	16, 217, 294, 517, 556, 687
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	1 cut(s)	81
SetI	ASST	6 cut(s)	51, 117, 413, 497, 510, 555
SfaNI	GCATC	2 cut(s)	202, 559
SfuI	TTCGAA	3 cut(s)	8, 71, 355
SmiMI	CAYNNNNRTG	1 cut(s)	633
Sse9I	AATT	3 cut(s)	310, 322, 382
SsiI	CCGC	4 cut(s)	449, 579, 582, 640
StyD4I	CCNGG	1 cut(s)	79
TaaI	ACNGT	2 cut(s)	151, 764
TaqI	TCGA	6 cut(s)	8, 71, 222, 293, 347, 355
TasI	AATT	3 cut(s)	310, 322, 382
TauI	GCSGC	1 cut(s)	582
TfiI	GAWTC	6 cut(s)	10, 55, 344, 403, 463, 747
Tru1I	TTAA	2 cut(s)	248, 510
Tru9I	TTAA	2 cut(s)	248, 510
TseFI	GTSAC	3 cut(s)	143, 532, 635
TseI	GCWGC	3 cut(s)	100, 392, 451
Tsp45I	GTSAC	3 cut(s)	143, 532, 635
TspDTI	ATGAA	1 cut(s)	170
TspGWI	ACGGA	1 cut(s)	588
XceI	RCATGY	1 cut(s)	674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.