Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0005292

Physical Location & Seq

Genomic Coordinates Reverse (-)

26168232 .. 26168759

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g26050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGATTTCGAATCCGGATCTGATTTTCTACGCCTGCATTGCCCACAAGGTCACGATTCTCGGCGAGTTTTCGAAAGAGCCGGGTCTCGGAAACTTAGCGCAGCAATGCGTGGAGGTAGCCCCTCCCCACCATTCCATGTTCAGTCACACGGTAAGAAAAAGGACTTACATTTTCTCATGTCATGACCCTTTTGTGTATTTCGCTATCTGCGATGCCCATCTCGATGACTCCGAGGCGCTTTCGTTCTTAAACCAGTTGAAATCCGGTTTTGAGGATGTTAGTGGAAGTGGGTCGATCTTGGTTCGGGATAATTTTTCCCCCAGTTGCTTGCAAGTCCAGTTTGATTCGATTATTCGAAAAGTAATGGCCTCGGACTCGCCCAATTCGCCGGCAGCCAGTCGGAATCTAAGCTTTGGTGCGAGTAAAGGGAAGAAAATGGTGCTGACACCGCTGCTTGGGAAGAATCCGAGCGAAGGGTTGAAGAAGAAGAGGAGGTTATCTGGGGAGGTTAATGGCGATCCTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

176

Amino Acids

19.11

Weight (kDa)

8.22

Isoelectric Point (pI)

51.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27840 AT5G52990
fragaria_vesca	FvH4_7g31440
malus_domestica	MD01G1217900.v1.1 MD07G1287600.v1.1
prunus_persica	Prupe.2G309300_v2.0.a1
pyrus_communis	pycom01g22800 pycom07g26050
rosa_chinensis	RchiOBHm_Chr1g0359031 RchiOBHm_Chr1g0380501 RchiOBHm_Chr2g0122261
rosa_laevigata	RLG00000026291
rosa_multiflora	Rmu_co8212514.1_g000001 Rmu_sc0001733.1_g000002 Rmu_sc0006267.1_g000010 Rmu_sc0006712.1_g000003 Rmu_sc0021603.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279270
rosa_rugosa	Rorug01G0267400 Rorug01G0421300
rosa_samantha	Rh1AG280600 Rh1AG446400 Rh1BG247600 Rh1BG401600 Rh1CG415900 Rh1DG431800 Rh2BG305100 Rh2CG283500
rosa_wichuraiana	Rw1G038830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	13
AciI	CCGC	1 cut(s)	449
AclWI	GGATC	2 cut(s)	24, 512
AfiI	CCNNNNNNNGG	3 cut(s)	86, 455, 473
AgsI	TTSAA	2 cut(s)	259, 481
AluBI	AGCT	1 cut(s)	411
AluI	AGCT	1 cut(s)	411
Alw26I	GTCTC	1 cut(s)	89
AlwI	GGATC	2 cut(s)	24, 512
Aor13HI	TCCGGA	1 cut(s)	13
AoxI	GGCC	1 cut(s)	366
ApeKI	GCWGC	3 cut(s)	100, 392, 451
AspLEI	GCGC	2 cut(s)	100, 238
AsuC2I	CCSGG	1 cut(s)	81
AsuII	TTCGAA	3 cut(s)	8, 71, 355
BbvI	GCAGC	3 cut(s)	112, 404, 438
BccI	CCATC	1 cut(s)	225
BcnI	CCSGG	1 cut(s)	81
BcoDI	GTCTC	1 cut(s)	89
BfoI	RGCGCY	1 cut(s)	239
BisI	GCNGC	3 cut(s)	101, 393, 452
BlsI	GCNGC	3 cut(s)	102, 394, 453
Bme1390I	CCNGG	1 cut(s)	81
BmrFI	CCNGG	1 cut(s)	81
BmrI	ACTGGG	1 cut(s)	315
BmsI	GCATC	1 cut(s)	202
BmuI	ACTGGG	1 cut(s)	315
Bpu14I	TTCGAA	3 cut(s)	8, 71, 355
BpuMI	CCSGG	1 cut(s)	81
BsaBI	GATNNNNATC	1 cut(s)	216
BsaI	GGTCTC	1 cut(s)	89
BsaJI	CCNNGG	2 cut(s)	231, 369
BsaWI	WCCGGW	2 cut(s)	13, 263
Bsc4I	CCNNNNNNNGG	3 cut(s)	86, 455, 473
Bse118I	RCCGGY	1 cut(s)	388
Bse1I	ACTGG	4 cut(s)	253, 321, 337, 396
Bse3DI	GCAATG	2 cut(s)	36, 110
Bse8I	GATNNNNATC	1 cut(s)	216
BseAI	TCCGGA	1 cut(s)	13
BseDI	CCNNGG	2 cut(s)	231, 369
BseGI	GGATG	1 cut(s)	280
BseJI	GATNNNNATC	1 cut(s)	216
BseLI	CCNNNNNNNGG	3 cut(s)	86, 455, 473
BseMI	GCAATG	2 cut(s)	36, 110
BseNI	ACTGG	4 cut(s)	253, 321, 337, 396
BseRI	GAGGAG	1 cut(s)	505
BseXI	GCAGC	3 cut(s)	112, 404, 438
BshFI	GGCC	1 cut(s)	368
BsiSI	CCGG	4 cut(s)	14, 80, 264, 389
BslI	CCNNNNNNNGG	3 cut(s)	86, 455, 473
BsmAI	GTCTC	1 cut(s)	89
BsnI	GGCC	1 cut(s)	368
Bso31I	GGTCTC	1 cut(s)	89
Bsp119I	TTCGAA	3 cut(s)	8, 71, 355
Bsp13I	TCCGGA	1 cut(s)	13
Bsp143I	GATC	3 cut(s)	16, 294, 517
BspACI	CCGC	1 cut(s)	449
BspANI	GGCC	1 cut(s)	368
BspEI	TCCGGA	1 cut(s)	13
BspHI	TCATGA	1 cut(s)	181
BspPI	GGATC	2 cut(s)	24, 512
BspT104I	TTCGAA	3 cut(s)	8, 71, 355
BspTNI	GGTCTC	1 cut(s)	89
BsrDI	GCAATG	2 cut(s)	36, 110
BsrFI	RCCGGY	1 cut(s)	388
BsrI	ACTGG	4 cut(s)	253, 321, 337, 396
BssAI	RCCGGY	1 cut(s)	388
BssECI	CCNNGG	2 cut(s)	231, 369
BssMI	GATC	3 cut(s)	16, 294, 517
Bst4CI	ACNGT	1 cut(s)	151
Bst6I	CTCTTC	1 cut(s)	482
BstBI	TTCGAA	3 cut(s)	8, 71, 355
BstC8I	GCNNGC	3 cut(s)	34, 329, 390
BstDEI	CTNAG	2 cut(s)	94, 407
BstF5I	GGATG	1 cut(s)	280
BstH2I	RGCGCY	1 cut(s)	239
BstHHI	GCGC	2 cut(s)	100, 238
BstKTI	GATC	3 cut(s)	19, 297, 520
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	3 cut(s)	16, 294, 517
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 385, 448, 522
BstSCI	CCNGG	1 cut(s)	79
BstV1I	GCAGC	3 cut(s)	112, 404, 438
BstX2I	RGATCY	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	16
BsuRI	GGCC	1 cut(s)	368
BtgZI	GCGATG	1 cut(s)	225
BtsCI	GGATG	1 cut(s)	280
Cac8I	GCNNGC	3 cut(s)	34, 329, 390
CciI	TCATGA	1 cut(s)	181
CfoI	GCGC	2 cut(s)	100, 238
Cfr10I	RCCGGY	1 cut(s)	388
CviAII	CATG	3 cut(s)	136, 177, 182
CviJI	RGCY	5 cut(s)	79, 119, 368, 395, 411
CviKI_1	RGCY	5 cut(s)	79, 119, 368, 395, 411
DdeI	CTNAG	2 cut(s)	94, 407
DpnI	GATC	3 cut(s)	18, 296, 519
DpnII	GATC	3 cut(s)	16, 294, 517
Eam1104I	CTCTTC	1 cut(s)	482
EarI	CTCTTC	1 cut(s)	482
Eco31I	GGTCTC	1 cut(s)	89
FaeI	CATG	3 cut(s)	139, 180, 185
FaiI	YATR	3 cut(s)	137, 178, 183
FatI	CATG	3 cut(s)	135, 176, 181
Fnu4HI	GCNGC	3 cut(s)	101, 393, 452
FokI	GGATG	1 cut(s)	287
Fsp4HI	GCNGC	3 cut(s)	101, 393, 452
GlaI	GCGC	2 cut(s)	99, 237
GluI	GCNGC	3 cut(s)	101, 393, 452
HaeII	RGCGCY	1 cut(s)	239
HaeIII	GGCC	1 cut(s)	368
HapII	CCGG	4 cut(s)	14, 80, 264, 389
HhaI	GCGC	2 cut(s)	100, 238
Hin1II	CATG	3 cut(s)	139, 180, 185
Hin6I	GCGC	2 cut(s)	98, 236
HinP1I	GCGC	2 cut(s)	98, 236
HindIII	AAGCTT	1 cut(s)	409
HinfI	GANTC	7 cut(s)	10, 55, 227, 344, 374, 403, 463
HpaII	CCGG	4 cut(s)	14, 80, 264, 389
Hpy188I	TCNGA	6 cut(s)	21, 89, 232, 373, 402, 468
Hpy188III	TCNNGA	5 cut(s)	14, 52, 182, 221, 305
HpyAV	CCTTC	1 cut(s)	467
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4V	TGCA	2 cut(s)	36, 331
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 385, 448, 522
HpyF3I	CTNAG	2 cut(s)	94, 407
Hsp92II	CATG	3 cut(s)	139, 180, 185
HspAI	GCGC	2 cut(s)	98, 236
Kpn2I	TCCGGA	1 cut(s)	13
KroI	GCCGGC	1 cut(s)	388
KroNI	GCCGGC	1 cut(s)	390
Kzo9I	GATC	3 cut(s)	16, 294, 517
Lsp1109I	GCAGC	3 cut(s)	112, 404, 438
LweI	GCATC	1 cut(s)	202
MaeIII	GTNAC	2 cut(s)	49, 143
MalI	GATC	3 cut(s)	18, 296, 519
MboI	GATC	3 cut(s)	16, 294, 517
MboII	GAAGA	5 cut(s)	442, 472, 493, 496, 499
MflI	RGATCY	1 cut(s)	16
MluCI	AATT	2 cut(s)	310, 382
MlyI	GAGTC	2 cut(s)	221, 368
MmeI	TCCRAC	1 cut(s)	380
MnlI	CCTC	8 cut(s)	106, 132, 226, 265, 379, 483, 486, 499
MroI	TCCGGA	1 cut(s)	13
MroNI	GCCGGC	1 cut(s)	388
MseI	TTAA	2 cut(s)	248, 510
MslI	CAYNNNNRTG	1 cut(s)	222
MspA1I	CMGCKG	1 cut(s)	451
MspI	CCGG	4 cut(s)	14, 80, 264, 389
MspR9I	CCNGG	1 cut(s)	81
MwoI	GCNNNNNNNGC	4 cut(s)	38, 385, 448, 522
NaeI	GCCGGC	1 cut(s)	390
NciI	CCSGG	1 cut(s)	81
NdeII	GATC	3 cut(s)	16, 294, 517
NgoMIV	GCCGGC	1 cut(s)	388
NlaIII	CATG	3 cut(s)	139, 180, 185
NmeAIII	GCCGAG	1 cut(s)	39
NmuCI	GTSAC	2 cut(s)	49, 143
NspV	TTCGAA	3 cut(s)	8, 71, 355
PagI	TCATGA	1 cut(s)	181
PcsI	WCGNNNNNNNCGW	2 cut(s)	207, 228
PdiI	GCCGGC	1 cut(s)	390
PfeI	GAWTC	5 cut(s)	10, 55, 344, 403, 463
PkrI	GCNGC	3 cut(s)	102, 394, 453
PleI	GAGTC	2 cut(s)	221, 368
PpsI	GAGTC	2 cut(s)	221, 368
PsuI	RGATCY	1 cut(s)	16
RseI	CAYNNNNRTG	1 cut(s)	222
SaqAI	TTAA	2 cut(s)	248, 510
SatI	GCNGC	3 cut(s)	101, 393, 452
Sau3AI	GATC	3 cut(s)	16, 294, 517
SchI	GAGTC	2 cut(s)	221, 368
ScrFI	CCNGG	1 cut(s)	81
SetI	ASST	5 cut(s)	51, 117, 413, 497, 510
SfaNI	GCATC	1 cut(s)	202
SfuI	TTCGAA	3 cut(s)	8, 71, 355
SmiMI	CAYNNNNRTG	1 cut(s)	222
Sse9I	AATT	2 cut(s)	310, 382
SsiI	CCGC	1 cut(s)	449
StyD4I	CCNGG	1 cut(s)	79
TaaI	ACNGT	1 cut(s)	151
TaqI	TCGA	6 cut(s)	8, 71, 222, 293, 347, 355
TasI	AATT	2 cut(s)	310, 382
TfiI	GAWTC	5 cut(s)	10, 55, 344, 403, 463
Tru1I	TTAA	2 cut(s)	248, 510
Tru9I	TTAA	2 cut(s)	248, 510
TseFI	GTSAC	2 cut(s)	49, 143
TseI	GCWGC	3 cut(s)	100, 392, 451
Tsp45I	GTSAC	2 cut(s)	49, 143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.