Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0005292

Physical Location & Seq

Genomic Coordinates Reverse (-)

31038784 .. 31039554

Gene Structure 771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1217900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGATTTCGAATCCAAATCTGATTTTCTACGCCTGCATTGCCCACAAGGTCACGATTCTCGGCGAGTTTTCGAAAGAGCCGGGTCTCGGAGACTTAGCGCAGCAATGCGTGGAGATAGCCCCTCCTCACCATTCCATGTTCACTCACACCGTAAGAAAAAGAACTTACATTTTCTCAATTCATGACCCTTTTGTGTATTTCGCTATCTACGATGCTGATCTCGATCAATCCGAGGCGCTTTCGTTCTTAAACCGGTTGAAATCGGATTTTGAGGAGGTTAGTGGAAGTGGGTCGATCTTGGTTCGGGATAATTTTGCCCCCAGTTGCTTGCAAGTCCAGTTCGATTCGATTATTCAGAAAATAATGGCCTCGGACTCGCCCAATTCACCGGCAGCCAGTCGGAATCTGAGCTTGAGTGCGAGTAAAGGGAAGAACATGGTGCTGACACCACTGCTTGGGAACAAGCCGAACGGAGGTTTGAAGAAGAAGAAGAAGAGGTTATCTGGAGAGGTTAATGGCGATCTTTGCAAAGATGTGACTGCAATGGAGAAGAAGGTGGATGTGTGCGACGATGCTAATGGCTGCGGGTTTAGGGATTTTTCGTTGCCAACGCAAAAGAGTGATCCTTTGCATTCGGGTGACCGCCAAAAGGCCAAGCAAGTTTGGAGGAGGCATGTTTGGGTGGTTTTGATGCTCGACTTGTTTGCTTGCGCCGTGTTGTTTGGGATTTGGTTGTGGGTTTGCAGGGGATTCAAGTGCCTTGCCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

257

Amino Acids

28.45

Weight (kDa)

8.68

Isoelectric Point (pI)

39.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27840 AT5G52990
fragaria_vesca	FvH4_7g31440
malus_domestica	MD01G1217900.v1.1 MD07G1287600.v1.1
prunus_persica	Prupe.2G309300_v2.0.a1
pyrus_communis	pycom01g22800 pycom07g26050
rosa_chinensis	RchiOBHm_Chr1g0359031 RchiOBHm_Chr1g0380501 RchiOBHm_Chr2g0122261
rosa_laevigata	RLG00000026291
rosa_multiflora	Rmu_co8212514.1_g000001 Rmu_sc0001733.1_g000002 Rmu_sc0006267.1_g000010 Rmu_sc0006712.1_g000003 Rmu_sc0021603.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279270
rosa_rugosa	Rorug01G0267400 Rorug01G0421300
rosa_samantha	Rh1AG280600 Rh1AG446400 Rh1BG247600 Rh1BG401600 Rh1CG415900 Rh1DG431800 Rh2BG305100 Rh2CG283500
rosa_wichuraiana	Rw1G038830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	455
AciI	CCGC	2 cut(s)	585, 643
AclWI	GGATC	1 cut(s)	617
AfiI	CCNNNNNNNGG	4 cut(s)	86, 455, 473, 649
AgeI	ACCGGT	1 cut(s)	252
AgsI	TTSAA	3 cut(s)	259, 481, 754
AluBI	AGCT	1 cut(s)	411
AluI	AGCT	1 cut(s)	411
Alw26I	GTCTC	2 cut(s)	84, 89
AlwI	GGATC	1 cut(s)	617
AoxI	GGCC	2 cut(s)	366, 651
ApeKI	GCWGC	3 cut(s)	100, 392, 582
AsiGI	ACCGGT	1 cut(s)	252
AspLEI	GCGC	3 cut(s)	100, 238, 713
AsuC2I	CCSGG	1 cut(s)	81
AsuHPI	GGTGA	3 cut(s)	119, 378, 650
AsuII	TTCGAA	2 cut(s)	8, 71
BbvI	GCAGC	3 cut(s)	112, 404, 569
BceAI	ACGGC	1 cut(s)	698
BcgI	CGANNNNNNTGC	2 cut(s)	686, 720
BcnI	CCSGG	1 cut(s)	81
BcoDI	GTCTC	2 cut(s)	84, 89
BfoI	RGCGCY	1 cut(s)	239
BisI	GCNGC	3 cut(s)	101, 393, 583
BlsI	GCNGC	3 cut(s)	102, 394, 584
Bme1390I	CCNGG	1 cut(s)	81
BmrFI	CCNGG	1 cut(s)	81
BmrI	ACTGGG	1 cut(s)	315
BmsI	GCATC	3 cut(s)	202, 562, 681
BmuI	ACTGGG	1 cut(s)	315
BpmI	CTGGAG	1 cut(s)	525
Bpu14I	TTCGAA	2 cut(s)	8, 71
BpuEI	CTTGAG	1 cut(s)	433
BpuMI	CCSGG	1 cut(s)	81
BsaBI	GATNNNNATC	2 cut(s)	216, 222
BsaI	GGTCTC	1 cut(s)	89
BsaJI	CCNNGG	2 cut(s)	231, 369
BsaWI	WCCGGW	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	4 cut(s)	86, 455, 473, 649
Bse118I	RCCGGY	2 cut(s)	252, 388
Bse1I	ACTGG	4 cut(s)	321, 337, 396, 765
Bse3DI	GCAATG	3 cut(s)	36, 110, 549
Bse8I	GATNNNNATC	2 cut(s)	216, 222
BseDI	CCNNGG	2 cut(s)	231, 369
BseGI	GGATG	1 cut(s)	565
BseJI	GATNNNNATC	2 cut(s)	216, 222
BseLI	CCNNNNNNNGG	4 cut(s)	86, 455, 473, 649
BseMI	GCAATG	3 cut(s)	36, 110, 549
BseMII	CTCAG	1 cut(s)	398
BseNI	ACTGG	4 cut(s)	321, 337, 396, 765
BseRI	GAGGAG	3 cut(s)	114, 287, 682
BseXI	GCAGC	3 cut(s)	112, 404, 569
BshFI	GGCC	2 cut(s)	368, 653
BshTI	ACCGGT	1 cut(s)	252
BsiSI	CCGG	3 cut(s)	80, 253, 389
BslI	CCNNNNNNNGG	4 cut(s)	86, 455, 473, 649
BsmAI	GTCTC	2 cut(s)	84, 89
BsmI	GAATGC	1 cut(s)	631
BsnI	GGCC	2 cut(s)	368, 653
Bso31I	GGTCTC	1 cut(s)	89
Bsp119I	TTCGAA	2 cut(s)	8, 71
Bsp143I	GATC	5 cut(s)	217, 223, 294, 520, 622
BspACI	CCGC	2 cut(s)	585, 643
BspANI	GGCC	2 cut(s)	368, 653
BspCNI	CTCAG	1 cut(s)	399
BspHI	TCATGA	1 cut(s)	181
BspPI	GGATC	1 cut(s)	617
BspT104I	TTCGAA	2 cut(s)	8, 71
BspTNI	GGTCTC	1 cut(s)	89
BsrDI	GCAATG	3 cut(s)	36, 110, 549
BsrFI	RCCGGY	2 cut(s)	252, 388
BsrI	ACTGG	4 cut(s)	321, 337, 396, 765
BssAI	RCCGGY	2 cut(s)	252, 388
BssECI	CCNNGG	2 cut(s)	231, 369
BssMI	GATC	5 cut(s)	217, 223, 294, 520, 622
Bst4CI	ACNGT	1 cut(s)	151
Bst6I	CTCTTC	1 cut(s)	488
BstBI	TTCGAA	2 cut(s)	8, 71
BstC8I	GCNNGC	3 cut(s)	34, 329, 709
BstDEI	CTNAG	2 cut(s)	94, 407
BstEII	GGTNACC	1 cut(s)	638
BstF5I	GGATG	1 cut(s)	565
BstH2I	RGCGCY	1 cut(s)	239
BstHHI	GCGC	3 cut(s)	100, 238, 713
BstKTI	GATC	5 cut(s)	220, 226, 297, 523, 625
BstMAI	GTCTC	2 cut(s)	84, 89
BstMBI	GATC	5 cut(s)	217, 223, 294, 520, 622
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 525
BstNSI	RCATGY	1 cut(s)	677
BstPI	GGTNACC	1 cut(s)	638
BstSCI	CCNGG	1 cut(s)	79
BstV1I	GCAGC	3 cut(s)	112, 404, 569
BsuRI	GGCC	2 cut(s)	368, 653
BtsCI	GGATG	1 cut(s)	565
BtsI	GCAGTG	1 cut(s)	449
BtsIMutI	CAGTG	1 cut(s)	449
Cac8I	GCNNGC	3 cut(s)	34, 329, 709
CciI	TCATGA	1 cut(s)	181
CfoI	GCGC	3 cut(s)	100, 238, 713
Cfr10I	RCCGGY	2 cut(s)	252, 388
CspAI	ACCGGT	1 cut(s)	252
CviAII	CATG	4 cut(s)	136, 182, 436, 674
CviJI	RGCY	8 cut(s)	79, 119, 368, 395, 411, 466, 582, 653
CviKI_1	RGCY	8 cut(s)	79, 119, 368, 395, 411, 466, 582, 653
DdeI	CTNAG	2 cut(s)	94, 407
DpnI	GATC	5 cut(s)	219, 225, 296, 522, 624
DpnII	GATC	5 cut(s)	217, 223, 294, 520, 622
Eam1104I	CTCTTC	1 cut(s)	488
EarI	CTCTTC	1 cut(s)	488
Eco31I	GGTCTC	1 cut(s)	89
Eco91I	GGTNACC	1 cut(s)	638
EcoO65I	GGTNACC	1 cut(s)	638
FaeI	CATG	4 cut(s)	139, 185, 439, 677
FaiI	YATR	4 cut(s)	137, 183, 437, 675
FatI	CATG	4 cut(s)	135, 181, 435, 673
FauI	CCCGC	1 cut(s)	578
Fnu4HI	GCNGC	3 cut(s)	101, 393, 583
FokI	GGATG	1 cut(s)	572
Fsp4HI	GCNGC	3 cut(s)	101, 393, 583
GlaI	GCGC	3 cut(s)	99, 237, 712
GluI	GCNGC	3 cut(s)	101, 393, 583
GsuI	CTGGAG	1 cut(s)	525
HaeII	RGCGCY	1 cut(s)	239
HaeIII	GGCC	2 cut(s)	368, 653
HapII	CCGG	3 cut(s)	80, 253, 389
HhaI	GCGC	3 cut(s)	100, 238, 713
Hin1II	CATG	4 cut(s)	139, 185, 439, 677
Hin6I	GCGC	3 cut(s)	98, 236, 711
HinP1I	GCGC	3 cut(s)	98, 236, 711
HinfI	GANTC	6 cut(s)	10, 55, 344, 374, 403, 750
HpaII	CCGG	3 cut(s)	80, 253, 389
HphI	GGTGA	3 cut(s)	119, 378, 650
Hpy166II	GTNNAC	1 cut(s)	141
Hpy188I	TCNGA	8 cut(s)	21, 89, 232, 265, 357, 373, 402, 408
Hpy188III	TCNNGA	5 cut(s)	52, 182, 221, 305, 504
Hpy8I	GTNNAC	1 cut(s)	141
Hpy99I	CGWCG	1 cut(s)	572
HpyAV	CCTTC	1 cut(s)	547
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4V	TGCA	6 cut(s)	36, 331, 528, 542, 631, 744
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 525
HpyF3I	CTNAG	2 cut(s)	94, 407
Hsp92II	CATG	4 cut(s)	139, 185, 439, 677
HspAI	GCGC	3 cut(s)	98, 236, 711
Kzo9I	GATC	5 cut(s)	217, 223, 294, 520, 622
LpnPI	CCDG	9 cut(s)	46, 93, 266, 334, 350, 402, 409, 489, 730
Lsp1109I	GCAGC	3 cut(s)	112, 404, 569
LweI	GCATC	3 cut(s)	202, 562, 681
MaeIII	GTNAC	3 cut(s)	49, 535, 638
MalI	GATC	5 cut(s)	219, 225, 296, 522, 624
MboI	GATC	5 cut(s)	217, 223, 294, 520, 622
MboII	GAAGA	7 cut(s)	442, 493, 496, 499, 502, 505, 562
MluCI	AATT	3 cut(s)	177, 310, 382
MlyI	GAGTC	1 cut(s)	368
MmeI	TCCRAC	1 cut(s)	380
MseI	TTAA	2 cut(s)	248, 513
MslI	CAYNNNNRTG	1 cut(s)	636
MspI	CCGG	3 cut(s)	80, 253, 389
MspR9I	CCNGG	1 cut(s)	81
Mva1269I	GAATGC	1 cut(s)	631
MwoI	GCNNNNNNNGC	2 cut(s)	38, 525
NciI	CCSGG	1 cut(s)	81
NdeII	GATC	5 cut(s)	217, 223, 294, 520, 622
NlaIII	CATG	4 cut(s)	139, 185, 439, 677
NmeAIII	GCCGAG	1 cut(s)	39
NmuCI	GTSAC	3 cut(s)	49, 535, 638
NspI	RCATGY	1 cut(s)	677
NspV	TTCGAA	2 cut(s)	8, 71
PagI	TCATGA	1 cut(s)	181
PcsI	WCGNNNNNNNCGW	2 cut(s)	207, 228
PctI	GAATGC	1 cut(s)	631
PfeI	GAWTC	5 cut(s)	10, 55, 344, 403, 750
PflMI	CCANNNNNTGG	1 cut(s)	455
PinAI	ACCGGT	1 cut(s)	252
PkrI	GCNGC	3 cut(s)	102, 394, 584
PleI	GAGTC	1 cut(s)	368
PpsI	GAGTC	1 cut(s)	368
PspEI	GGTNACC	1 cut(s)	638
RseI	CAYNNNNRTG	1 cut(s)	636
SaqAI	TTAA	2 cut(s)	248, 513
SatI	GCNGC	3 cut(s)	101, 393, 583
Sau3AI	GATC	5 cut(s)	217, 223, 294, 520, 622
SchI	GAGTC	1 cut(s)	368
ScrFI	CCNGG	1 cut(s)	81
SetI	ASST	7 cut(s)	51, 279, 413, 478, 500, 513, 558
SfaNI	GCATC	3 cut(s)	202, 562, 681
SfuI	TTCGAA	2 cut(s)	8, 71
SmiMI	CAYNNNNRTG	1 cut(s)	636
SmlI	CTYRAG	1 cut(s)	412
SmoI	CTYRAG	1 cut(s)	412
Sse9I	AATT	3 cut(s)	177, 310, 382
SsiI	CCGC	2 cut(s)	585, 643
StyD4I	CCNGG	1 cut(s)	79
TaaI	ACNGT	1 cut(s)	151
TaqI	TCGA	7 cut(s)	8, 71, 222, 293, 342, 347, 696
TasI	AATT	3 cut(s)	177, 310, 382
TfiI	GAWTC	5 cut(s)	10, 55, 344, 403, 750
Tru1I	TTAA	2 cut(s)	248, 513
Tru9I	TTAA	2 cut(s)	248, 513
TscAI	CASTG	1 cut(s)	456
TseFI	GTSAC	3 cut(s)	49, 535, 638
TseI	GCWGC	3 cut(s)	100, 392, 582
Tsp45I	GTSAC	3 cut(s)	49, 535, 638
TspDTI	ATGAA	1 cut(s)	170
TspGWI	ACGGA	1 cut(s)	486
TspRI	CASTG	1 cut(s)	456
Van91I	CCANNNNNTGG	1 cut(s)	455
XceI	RCATGY	1 cut(s)	677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.