Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0005292

Physical Location & Seq

Genomic Coordinates Reverse (-)

37478794 .. 37479665

Gene Structure 872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG247600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGATTTCGAATCTGAGTCTGATTTACTACGCCTGCATTGCCCAGAAGATCGGCAAGATTGCGAAAAAGCTCGAAATCGGAGCCCTAGCTCGGAAATGCATCGAGAAATCCCCACCGCACCATTCCTTGTACACCCACACCGTCATAAAGCGAATCTATATCTTCTCAATGGCTGACCCTTTTGTGATATTCGGCATTTTCGATCAAGATCTCAATCAATCTGAGGTACTTTTGTTCTTGAATAGATTGAGATGCGATGTCAAGAGGATTAATGGAACTGGGTCGGTCTCGGATGGTGGAGATTTCCCCTCCCATTACTTCCAAGCTGAGTTTGATTCGATTATGAGGGAAGTAATGGCATCGGATTTGATTTGCCCACTTCGCCGCTGGCAAGTCGAAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

134

Amino Acids

15.33

Weight (kDa)

8.37

Isoelectric Point (pI)

54.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27840 AT5G52990
fragaria_vesca	FvH4_7g31440
malus_domestica	MD01G1217900.v1.1 MD07G1287600.v1.1
prunus_persica	Prupe.2G309300_v2.0.a1
pyrus_communis	pycom01g22800 pycom07g26050
rosa_chinensis	RchiOBHm_Chr1g0359031 RchiOBHm_Chr1g0380501 RchiOBHm_Chr2g0122261
rosa_laevigata	RLG00000026291
rosa_multiflora	Rmu_co8212514.1_g000001 Rmu_sc0001733.1_g000002 Rmu_sc0006267.1_g000010 Rmu_sc0006712.1_g000003 Rmu_sc0021603.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279270
rosa_rugosa	Rorug01G0267400 Rorug01G0421300
rosa_samantha	Rh1AG280600 Rh1AG446400 Rh1BG247600 Rh1BG401600 Rh1CG415900 Rh1DG431800 Rh2BG305100 Rh2CG283500
rosa_wichuraiana	Rw1G038830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	116, 385
AfaI	GTAC	2 cut(s)	131, 228
AfiI	CCNNNNNNNGG	1 cut(s)	90
AgsI	TTSAA	1 cut(s)	241
AluBI	AGCT	3 cut(s)	70, 89, 326
AluI	AGCT	3 cut(s)	70, 89, 326
Alw26I	GTCTC	1 cut(s)	292
AseI	ATTAAT	1 cut(s)	270
AsuII	TTCGAA	1 cut(s)	8
BaeI	ACNNNNGTAYC	2 cut(s)	218, 251
BanII	GRGCYC	1 cut(s)	85
BccI	CCATC	1 cut(s)	287
BcoDI	GTCTC	1 cut(s)	292
BfaI	CTAG	1 cut(s)	86
BglII	AGATCT	1 cut(s)	208
BisI	GCNGC	1 cut(s)	385
BlsI	GCNGC	1 cut(s)	386
BmiI	GGNNCC	1 cut(s)	82
BmrI	ACTGGG	1 cut(s)	288
BmsI	GCATC	3 cut(s)	108, 242, 368
BmuI	ACTGGG	1 cut(s)	288
Bpu14I	TTCGAA	1 cut(s)	8
BsaBI	GATNNNNATC	2 cut(s)	207, 213
BsaI	GGTCTC	1 cut(s)	292
Bsc4I	CCNNNNNNNGG	1 cut(s)	90
Bse1I	ACTGG	1 cut(s)	283
Bse3DI	GCAATG	1 cut(s)	36
Bse8I	GATNNNNATC	2 cut(s)	207, 213
BseGI	GGATG	1 cut(s)	298
BseJI	GATNNNNATC	2 cut(s)	207, 213
BseLI	CCNNNNNNNGG	1 cut(s)	90
BseMI	GCAATG	1 cut(s)	36
BseMII	CTCAG	3 cut(s)	5, 213, 318
BseNI	ACTGG	1 cut(s)	283
BslI	CCNNNNNNNGG	1 cut(s)	90
BsmAI	GTCTC	1 cut(s)	292
Bso31I	GGTCTC	1 cut(s)	292
Bsp119I	TTCGAA	1 cut(s)	8
Bsp1286I	GDGCHC	1 cut(s)	85
Bsp1407I	TGTACA	1 cut(s)	129
Bsp143I	GATC	3 cut(s)	48, 202, 208
BspACI	CCGC	2 cut(s)	116, 385
BspCNI	CTCAG	3 cut(s)	6, 214, 319
BspLI	GGNNCC	1 cut(s)	82
BspT104I	TTCGAA	1 cut(s)	8
BspTNI	GGTCTC	1 cut(s)	292
BsrDI	GCAATG	1 cut(s)	36
BsrGI	TGTACA	1 cut(s)	129
BsrI	ACTGG	1 cut(s)	283
BssMI	GATC	3 cut(s)	48, 202, 208
Bst4CI	ACNGT	1 cut(s)	142
BstAUI	TGTACA	1 cut(s)	129
BstBI	TTCGAA	1 cut(s)	8
BstC8I	GCNNGC	2 cut(s)	34, 389
BstDEI	CTNAG	3 cut(s)	14, 222, 327
BstF5I	GGATG	1 cut(s)	298
BstKTI	GATC	3 cut(s)	51, 205, 211
BstMAI	GTCTC	1 cut(s)	292
BstMBI	GATC	3 cut(s)	48, 202, 208
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 381
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
BtgZI	GCGATG	1 cut(s)	270
BtsCI	GGATG	1 cut(s)	298
Cac8I	GCNNGC	2 cut(s)	34, 389
Csp6I	GTAC	2 cut(s)	130, 227
CviJI	RGCY	5 cut(s)	70, 83, 89, 173, 326
CviKI_1	RGCY	5 cut(s)	70, 83, 89, 173, 326
CviQI	GTAC	2 cut(s)	130, 227
DdeI	CTNAG	3 cut(s)	14, 222, 327
DpnI	GATC	3 cut(s)	50, 204, 210
DpnII	GATC	3 cut(s)	48, 202, 208
Eco24I	GRGCYC	1 cut(s)	85
Eco31I	GGTCTC	1 cut(s)	292
EcoT22I	ATGCAT	1 cut(s)	101
EcoT38I	GRGCYC	1 cut(s)	85
FaiI	YATR	3 cut(s)	146, 159, 344
Fnu4HI	GCNGC	1 cut(s)	385
FokI	GGATG	1 cut(s)	305
FriOI	GRGCYC	1 cut(s)	85
Fsp4HI	GCNGC	1 cut(s)	385
FspBI	CTAG	1 cut(s)	86
GluI	GCNGC	1 cut(s)	385
HinfI	GANTC	4 cut(s)	10, 16, 153, 335
Hpy166II	GTNNAC	1 cut(s)	132
Hpy188I	TCNGA	8 cut(s)	15, 21, 80, 93, 223, 292, 364, 404
Hpy188III	TCNNGA	4 cut(s)	103, 206, 238, 262
Hpy8I	GTNNAC	1 cut(s)	132
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4V	TGCA	2 cut(s)	36, 99
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 381
HpyF3I	CTNAG	3 cut(s)	14, 222, 327
Kzo9I	GATC	3 cut(s)	48, 202, 208
LmnI	GCTCC	1 cut(s)	80
LpnPI	CCDG	4 cut(s)	46, 56, 264, 373
LweI	GCATC	3 cut(s)	108, 242, 368
MaeI	CTAG	1 cut(s)	86
MalI	GATC	3 cut(s)	50, 204, 210
MboI	GATC	3 cut(s)	48, 202, 208
MboII	GAAGA	2 cut(s)	58, 154
MflI	RGATCY	1 cut(s)	208
MhlI	GDGCHC	1 cut(s)	85
MlyI	GAGTC	1 cut(s)	25
MnlI	CCTC	4 cut(s)	217, 258, 319, 339
Mph1103I	ATGCAT	1 cut(s)	101
MseI	TTAA	1 cut(s)	270
MspA1I	CMGCKG	1 cut(s)	387
MwoI	GCNNNNNNNGC	2 cut(s)	38, 381
NdeII	GATC	3 cut(s)	48, 202, 208
NlaIV	GGNNCC	1 cut(s)	82
NsiI	ATGCAT	1 cut(s)	101
NspV	TTCGAA	1 cut(s)	8
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PfeI	GAWTC	3 cut(s)	10, 153, 335
PkrI	GCNGC	1 cut(s)	386
PleI	GAGTC	1 cut(s)	24
PpsI	GAGTC	1 cut(s)	24
PshBI	ATTAAT	1 cut(s)	270
PspN4I	GGNNCC	1 cut(s)	82
PsuI	RGATCY	1 cut(s)	208
RsaI	GTAC	2 cut(s)	131, 228
RsaNI	GTAC	2 cut(s)	130, 227
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	1 cut(s)	385
Sau3AI	GATC	3 cut(s)	48, 202, 208
SchI	GAGTC	1 cut(s)	25
SduI	GDGCHC	1 cut(s)	85
SetI	ASST	4 cut(s)	72, 91, 228, 328
SfaNI	GCATC	3 cut(s)	108, 242, 368
SfuI	TTCGAA	1 cut(s)	8
SsiI	CCGC	2 cut(s)	116, 385
SspMI	CTAG	1 cut(s)	86
TaaI	ACNGT	1 cut(s)	142
TaqI	TCGA	6 cut(s)	8, 72, 102, 201, 338, 396
TaqII	GACCGA	1 cut(s)	274
TatI	WGTACW	1 cut(s)	129
TauI	GCSGC	1 cut(s)	387
TfiI	GAWTC	3 cut(s)	10, 153, 335
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
VspI	ATTAAT	1 cut(s)	270
XcmI	CCANNNNNNNNNTGG	1 cut(s)	384
XspI	CTAG	1 cut(s)	86
Zsp2I	ATGCAT	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.