Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005292

Physical Location & Seq

Genomic Coordinates Reverse (-)

37932576 .. 37935784

Gene Structure 3209 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0267400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1665 bp

ATGGTGCAAGTCAAAGAATGTGATCCTAACATGGAAAAGGGGGTTTTGCTTTCTTTGAGTCCTCCGGTATCGGATAGCAGTGGAGATAACACAGCTCTCAAGCCAGCCTCTGCTCAACTGAGAATGACAGGCCCTACGAGACGATCAACAAAGGGAGGCTGGACAGAGGAAGAGGATAGAATTCTAACAGATGCTGTCGAGAAGCACAATGGCAAGAACTGGAAAAGGATTGCTGAATGTGTTCGTGGCAGAACAGATGTTCAGTGCCTTCATCGCTGGCAGAAAGTCCTCTCACCTGATCTTGTTAAAGGATTTTGGTCTAAGGAGGAAGATGATCTAATAATTGAGTTGGTCGCAAAGCAGGGGAATAAGAAATGGTCTGAAATAGCAAAGTCCTTGCCAGGCCGTATAGGCAAGCAATGTCGAGAGAGGTGGCACAACCATTTAAATCCAGATATAAAAAGAACTGCATGGACAAATGAAGAAGAAAAGATTCTCATTGAGTCGCATAAAGCCTATGGGAACAAATGGGCTGAAATAGCAAAGCTTCTGCCTGGAAGGACAGAAAATTCAATAAAGAACCACTGGAACTGCTCAGTTAAGAAAAAATTAGAGCTACGCTCATTCCATATATCTAATATGGAAAGTCATAAAATAAAAGCAGGAGTCAGAAAGACAGAGGCGGTAAGACAAAGTCTTGATTGGATAGCCAACTTCGATAAAAATGTGGAATCCTGTTCAATTAATCTTGATCTGGTTCTTGGAACTCCTAAAGGAAGGGAGATCCAGATAAAATCTTTGGACAAAGGAAATCGCGGTTGGCTTACAAAAGGAGCTGGTGCAGATAATATGATCAAATCACCACCTAGTAACCTTTATTACGATAGAGCTGCAGCTGCATATGGTCTAAATGTTGAACAACGGAAAGAAATTTATCATAACTATGGCAGGTTGAGAGACTCGCATTATTTATCTGCTAAACAATCAATCAAAGCTTGCACTACTCCTTCCTGTGATCTTTGGGGCTTTCCCTTTTTTCATGGAAAGAATCATAAACCCAATCACCCTATGAGTTTGTTGAATAATGGCTCAGATTCTTTTGACTACAATAGAGGAGCTGGAAATTTTCTCAAGAAACCAGATCGTCCTATTACAGTTGAGAGATTACATGAATCTTGTAAAGTATCACAAGCTTATGAGGAAACTAAAGATGCTGGTGGAGCTACTGAGCATTCAGAGGCTTCAAATCCTGGTTGCTTATGCTATAGGCCACTCCAACAAGAGGATTTGGACTATTTTTTTAAAAATGGTGAATTCCCAAGCACAGATAGTTACATCCAGACAGCATTTAGTTCAGTTTCCTTATGCACTCCACCAAGCCAAGACAGAGGAATATCTGTTGATTGTAATGATCCGGATTCCGCATTGAGAAGTGCAGCAAGGACTTTTAAGAGTTCGCCATCTATCCTAAGAAAACGAAGACATCCAATTTCCAGACTAAGTCTCAACTCAGAGCATCACTATGTCATCTCAGAAGAAATTAGCAATAACTCCAGAAACAGCCTCAACATTCTAAGTCCATGTGGTGAGACAAAATTCCAGTGCATGGCTCGATCAAATGCCAAAAAACTTTTCCTCTCTCCTCAAAAGTCTCAGAAGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

554

Amino Acids

62.61

Weight (kDa)

9.21

Isoelectric Point (pI)

59.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	51 - 97	5.6e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	54 - 110	2.5e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	104 - 149	1.6e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	106 - 163	1.5e-19	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	155 - 197	3e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	158 - 204	2.4e-11	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0005292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27840 AT5G52990
fragaria_vesca	FvH4_7g31440
malus_domestica	MD01G1217900.v1.1 MD07G1287600.v1.1
prunus_persica	Prupe.2G309300_v2.0.a1
pyrus_communis	pycom01g22800 pycom07g26050
rosa_chinensis	RchiOBHm_Chr1g0359031 RchiOBHm_Chr1g0380501 RchiOBHm_Chr2g0122261
rosa_laevigata	RLG00000026291
rosa_multiflora	Rmu_co8212514.1_g000001 Rmu_sc0001733.1_g000002 Rmu_sc0006267.1_g000010 Rmu_sc0006712.1_g000003 Rmu_sc0021603.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279270
rosa_rugosa	Rorug01G0267400 Rorug01G0421300
rosa_samantha	Rh1AG280600 Rh1AG446400 Rh1BG247600 Rh1BG401600 Rh1CG415900 Rh1DG431800 Rh2BG305100 Rh2CG283500
rosa_wichuraiana	Rw1G038830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	939
AccB7I	CCANNNNNTGG	1 cut(s)	1606
AccII	CGCG	1 cut(s)	816
AccIII	TCCGGA	1 cut(s)	1414
AciI	CCGC	3 cut(s)	683, 816, 1422
AclWI	GGATC	3 cut(s)	17, 778, 1406
AcsI	RAATTY	6 cut(s)	180, 568, 930, 1123, 1313, 1595
AfiI	CCNNNNNNNGG	2 cut(s)	1282, 1606
AgsI	TTSAA	5 cut(s)	573, 741, 917, 1081, 1245
AjnI	CCWGG	3 cut(s)	400, 553, 1249
AjuI	GAANNNNNNNTTGG	4 cut(s)	802, 834, 1616, 1648
Alw26I	GTCTC	5 cut(s)	133, 951, 1508, 1583, 1656
AlwI	GGATC	3 cut(s)	17, 778, 1406
AlwNI	CAGNNNCTG	2 cut(s)	110, 194
Aor13HI	TCCGGA	1 cut(s)	1414
AoxI	GGCC	3 cut(s)	130, 403, 1268
ApeKI	GCWGC	4 cut(s)	890, 893, 896, 1436
ApoI	RAATTY	6 cut(s)	180, 568, 930, 1123, 1313, 1595
AseI	ATTAAT	1 cut(s)	744
Asp700I	GAANNNNTTC	2 cut(s)	240, 492
AspS9I	GGNCC	1 cut(s)	131
AsuHPI	GGTGA	5 cut(s)	285, 852, 1055, 1322, 1598
BbsI	GAAGAC	1 cut(s)	1486
BbvI	GCAGC	4 cut(s)	877, 883, 905, 1448
BccI	CCATC	1 cut(s)	1468
BceAI	ACGGC	1 cut(s)	390
BcgI	CGANNNNNNTGC	2 cut(s)	872, 906
BciT130I	CCWGG	3 cut(s)	402, 555, 1251
BclI	TGATCA	1 cut(s)	852
BcoDI	GTCTC	5 cut(s)	133, 951, 1508, 1583, 1656
BfaI	CTAG	1 cut(s)	867
BfmI	CTRYAG	2 cut(s)	891, 1264
BfuAI	ACCTGC	1 cut(s)	939
BglI	GCCNNNNNGGC	1 cut(s)	411
BisI	GCNGC	4 cut(s)	891, 894, 897, 1437
BlsI	GCNGC	4 cut(s)	892, 895, 898, 1438
Bme1390I	CCNGG	3 cut(s)	402, 555, 1251
BmgT120I	GGNCC	1 cut(s)	131
BmrFI	CCNGG	3 cut(s)	402, 555, 1251
BmsI	GCATC	3 cut(s)	181, 1201, 1525
BpiI	GAAGAC	1 cut(s)	1486
BplI	GAGNNNNNCTC	2 cut(s)	605, 637
BpmI	CTGGAG	1 cut(s)	1537
BpuEI	CTTGAG	2 cut(s)	83, 1115
BsaWI	WCCGGW	2 cut(s)	64, 1414
Bsc4I	CCNNNNNNNGG	2 cut(s)	1282, 1606
Bse1I	ACTGG	3 cut(s)	224, 590, 1600
Bse3DI	GCAATG	1 cut(s)	425
BseAI	TCCGGA	1 cut(s)	1414
BseBI	CCWGG	3 cut(s)	402, 555, 1251
BseGI	GGATG	2 cut(s)	1335, 1483
BseLI	CCNNNNNNNGG	2 cut(s)	1282, 1606
BseMI	GCAATG	1 cut(s)	425
BseMII	CTCAG	6 cut(s)	110, 609, 1104, 1218, 1524, 1545
BseNI	ACTGG	3 cut(s)	224, 590, 1600
BseRI	GAGGAG	2 cut(s)	1128, 1632
BseXI	GCAGC	4 cut(s)	877, 883, 905, 1448
BsgI	GTGCAG	2 cut(s)	861, 1455
Bsh1236I	CGCG	1 cut(s)	816
BshFI	GGCC	3 cut(s)	132, 405, 1270
BsiSI	CCGG	2 cut(s)	65, 1415
BslI	CCNNNNNNNGG	2 cut(s)	1282, 1606
BsmAI	GTCTC	5 cut(s)	133, 951, 1508, 1583, 1656
BsmBI	CGTCTC	1 cut(s)	133
BsmI	GAATGC	1 cut(s)	1231
BsnI	GGCC	3 cut(s)	132, 405, 1270
Bsp13I	TCCGGA	1 cut(s)	1414
BspACI	CCGC	3 cut(s)	683, 816, 1422
BspANI	GGCC	3 cut(s)	132, 405, 1270
BspCNI	CTCAG	6 cut(s)	111, 608, 1103, 1219, 1523, 1544
BspEI	TCCGGA	1 cut(s)	1414
BspFNI	CGCG	1 cut(s)	816
BspMAI	CTGCAG	1 cut(s)	895
BspMI	ACCTGC	1 cut(s)	939
BspPI	GGATC	3 cut(s)	17, 778, 1406
BsrDI	GCAATG	1 cut(s)	425
BsrI	ACTGG	3 cut(s)	224, 590, 1600
Bst2UI	CCWGG	3 cut(s)	402, 555, 1251
Bst4CI	ACNGT	1 cut(s)	1156
Bst6I	CTCTTC	1 cut(s)	165
BstC8I	GCNNGC	4 cut(s)	105, 278, 416, 997
BstF5I	GGATG	2 cut(s)	1335, 1483
BstFNI	CGCG	1 cut(s)	816
BstMAI	GTCTC	5 cut(s)	133, 951, 1508, 1583, 1656
BstMWI	GCNNNNNNNGC	5 cut(s)	273, 411, 539, 896, 1220
BstNI	CCWGG	3 cut(s)	402, 555, 1251
BstSCI	CCNGG	3 cut(s)	400, 553, 1249
BstSFI	CTRYAG	2 cut(s)	891, 1264
BstUI	CGCG	1 cut(s)	816
BstV1I	GCAGC	4 cut(s)	877, 883, 905, 1448
BstV2I	GAAGAC	1 cut(s)	1486
BstX2I	RGATCY	1 cut(s)	783
BstYI	RGATCY	1 cut(s)	783
BsuRI	GGCC	3 cut(s)	132, 405, 1270
BtgZI	GCGATG	1 cut(s)	257
BtsCI	GGATG	2 cut(s)	1335, 1483
BtsI	GCAGTG	1 cut(s)	85
BtsIMutI	CAGTG	4 cut(s)	85, 269, 583, 1607
BveI	ACCTGC	1 cut(s)	939
Cac8I	GCNNGC	4 cut(s)	105, 278, 416, 997
CaiI	CAGNNNCTG	2 cut(s)	110, 194
Cfr13I	GGNCC	1 cut(s)	131
CviAII	CATG	6 cut(s)	31, 471, 1040, 1169, 1581, 1606
DraI	TTTAAA	2 cut(s)	447, 1303
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
EcoO109I	RGGNCCY	1 cut(s)	131
EcoRI	GAATTC	2 cut(s)	180, 1313
EcoRII	CCWGG	3 cut(s)	400, 553, 1249
Esp3I	CGTCTC	1 cut(s)	133
FaeI	CATG	6 cut(s)	34, 474, 1043, 1172, 1584, 1609
FatI	CATG	6 cut(s)	30, 470, 1039, 1168, 1580, 1605
FauNDI	CATATG	1 cut(s)	901
FbaI	TGATCA	1 cut(s)	852
Fnu4HI	GCNGC	4 cut(s)	891, 894, 897, 1437
FokI	GGATG	2 cut(s)	1322, 1470
Fsp4HI	GCNGC	4 cut(s)	891, 894, 897, 1437
FspBI	CTAG	1 cut(s)	867
GluI	GCNGC	4 cut(s)	891, 894, 897, 1437
GsuI	CTGGAG	1 cut(s)	1537
HaeIII	GGCC	3 cut(s)	132, 405, 1270
HapII	CCGG	2 cut(s)	65, 1415
Hin1II	CATG	6 cut(s)	34, 474, 1043, 1172, 1584, 1609
HindIII	AAGCTT	4 cut(s)	545, 993, 1191, 1658
HpaII	CCGG	2 cut(s)	65, 1415
HphI	GGTGA	5 cut(s)	285, 852, 1055, 1322, 1598
Hpy188I	TCNGA	8 cut(s)	73, 382, 671, 1093, 1237, 1513, 1534, 1656
HpyAV	CCTTC	4 cut(s)	278, 552, 771, 1017
HpyCH4III	ACNGT	1 cut(s)	1156
HpyCH4V	TGCA	9 cut(s)	7, 470, 842, 893, 899, 999, 1368, 1436, 1605
HpyF10VI	GCNNNNNNNGC	5 cut(s)	273, 411, 539, 896, 1220
Hsp92II	CATG	6 cut(s)	34, 474, 1043, 1172, 1584, 1609
Kpn2I	TCCGGA	1 cut(s)	1414
Ksp22I	TGATCA	1 cut(s)	852
LmnI	GCTCC	3 cut(s)	833, 1115, 1220
Lsp1109I	GCAGC	4 cut(s)	877, 883, 905, 1448
LweI	GCATC	3 cut(s)	181, 1201, 1525
MaeI	CTAG	1 cut(s)	867
MaeIII	GTNAC	2 cut(s)	869, 1331
MboII	GAAGA	6 cut(s)	182, 341, 494, 497, 1491, 1547
MflI	RGATCY	1 cut(s)	783
MlyI	GAGTC	4 cut(s)	67, 512, 675, 953
MmeI	TCCRAC	1 cut(s)	1300
MroI	TCCGGA	1 cut(s)	1414
MroXI	GAANNNNTTC	2 cut(s)	240, 492
MseI	TTAA	6 cut(s)	306, 446, 600, 744, 1302, 1449
MslI	CAYNNNNRTG	2 cut(s)	942, 1521
MspA1I	CMGCKG	1 cut(s)	896
MspI	CCGG	2 cut(s)	65, 1415
MspR9I	CCNGG	3 cut(s)	402, 555, 1251
Mva1269I	GAATGC	1 cut(s)	1231
MvaI	CCWGG	3 cut(s)	402, 555, 1251
MvnI	CGCG	1 cut(s)	816
MwoI	GCNNNNNNNGC	5 cut(s)	273, 411, 539, 896, 1220
NdeI	CATATG	1 cut(s)	901
NlaIII	CATG	6 cut(s)	34, 474, 1043, 1172, 1584, 1609
PctI	GAATGC	1 cut(s)	1231
PdmI	GAANNNNTTC	2 cut(s)	240, 492
PfeI	GAWTC	6 cut(s)	493, 731, 1048, 1094, 1172, 1418
PflFI	GACNNNGTC	2 cut(s)	693, 1500
PflMI	CCANNNNNTGG	1 cut(s)	1606
PkrI	GCNGC	4 cut(s)	892, 895, 898, 1438
PleI	GAGTC	4 cut(s)	66, 511, 674, 953
PpsI	GAGTC	4 cut(s)	66, 511, 674, 953
PshBI	ATTAAT	1 cut(s)	744
Psp6I	CCWGG	3 cut(s)	400, 553, 1249
PspGI	CCWGG	3 cut(s)	400, 553, 1249
PspPI	GGNCC	1 cut(s)	131
PstI	CTGCAG	1 cut(s)	895
PstNI	CAGNNNCTG	2 cut(s)	110, 194
PsuI	RGATCY	1 cut(s)	783
PsyI	GACNNNGTC	2 cut(s)	693, 1500
PvuII	CAGCTG	1 cut(s)	896
RseI	CAYNNNNRTG	2 cut(s)	942, 1521
SaqAI	TTAA	6 cut(s)	306, 446, 600, 744, 1302, 1449
SatI	GCNGC	4 cut(s)	891, 894, 897, 1437
Sau96I	GGNCC	1 cut(s)	131
SchI	GAGTC	4 cut(s)	67, 512, 675, 953
ScrFI	CCNGG	3 cut(s)	402, 555, 1251
SfaNI	GCATC	3 cut(s)	181, 1201, 1525
SfcI	CTRYAG	2 cut(s)	891, 1264
SmiI	ATTTAAAT	1 cut(s)	447
SmiMI	CAYNNNNRTG	2 cut(s)	942, 1521
SmlI	CTYRAG	2 cut(s)	98, 1130
SmoI	CTYRAG	2 cut(s)	98, 1130
SsiI	CCGC	3 cut(s)	683, 816, 1422
SspMI	CTAG	1 cut(s)	867
StyD4I	CCNGG	3 cut(s)	400, 553, 1249
SwaI	ATTTAAAT	1 cut(s)	447
TaaI	ACNGT	1 cut(s)	1156
TaqI	TCGA	4 cut(s)	198, 424, 717, 1612
TfiI	GAWTC	6 cut(s)	493, 731, 1048, 1094, 1172, 1418
Tru1I	TTAA	6 cut(s)	306, 446, 600, 744, 1302, 1449
Tru9I	TTAA	6 cut(s)	306, 446, 600, 744, 1302, 1449
TscAI	CASTG	4 cut(s)	85, 269, 590, 1607
TseI	GCWGC	4 cut(s)	890, 893, 896, 1436
TspDTI	ATGAA	4 cut(s)	260, 495, 1028, 1185
TspGWI	ACGGA	1 cut(s)	937
TspRI	CASTG	4 cut(s)	85, 269, 590, 1607
Tth111I	GACNNNGTC	2 cut(s)	693, 1500
Van91I	CCANNNNNTGG	1 cut(s)	1606
VspI	ATTAAT	1 cut(s)	744
XapI	RAATTY	6 cut(s)	180, 568, 930, 1123, 1313, 1595
XmnI	GAANNNNTTC	2 cut(s)	240, 492
XspI	CTAG	1 cut(s)	867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.