Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0005292

Physical Location & Seq

Genomic Coordinates Reverse (-)

20278791 .. 20279543

Gene Structure 753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g22800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGATTTCGAATCCGAATCTGATTTTCTACGCCTGCATTGCCCACAAGGTCACGATTCTCGGCGAGTTTTCGAAAGAGCCGGGTCTCGGAGACTTAGCGCAGCAATGCGTGGAGATAGCCCCTCCTCACCATTCCATGTTCACTCACACCGTAAGAAAAAGAACTTACATTTTCTCAATTCATGACCCTTTTGTTGCTGATCTCGATCAATCCGAGGCGCTTTCGTTCTTAAACCGGTTGAAATCGGATTTTGAGGAGGTTAGTGGAAGTGGGTCGATCTTGGTTCGGGATAATTTTGCCCCTCGTTGCTTGCAAGTCCAGTTTGATTTGATTATTCAGAAAATAATGGCCTCGGACTTGCCCAATTCACCGGCAGCCAGTCGGAATCTGAGCTTGAGTGCGAGTACAGGGAAGAACATGGTGCTGACGCCACTGCTTGGGAACAAGCCGAACGAAGGGTTGAAGAAGAAGAAGAAGAGGTTATCTGGAGAGGTTAATGGCGATCTTTGCAAAGATGTGACTGCAATGGAGAAGAAGGTGGAGGTATGTGACGATGCTAATGGCTGCGGGTTTAGGGATTTTTCGTTGCCAACGCAAAAGAGTGATCATTTGCATTCGGGCGACCGCCAAAAGGCCAAGCAAGTTTGGAGGAGGCATGTTTGGGTAATTTTGATGCTCGACTTGTTCGTTTGCGCCGTGTTGTTTGGGATTTGGTTGTGGGTTTGCAGGGGATTCAAGTGCATTGCCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

251

Amino Acids

27.94

Weight (kDa)

8.7

Isoelectric Point (pI)

33.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27840 AT5G52990
fragaria_vesca	FvH4_7g31440
malus_domestica	MD01G1217900.v1.1 MD07G1287600.v1.1
prunus_persica	Prupe.2G309300_v2.0.a1
pyrus_communis	pycom01g22800 pycom07g26050
rosa_chinensis	RchiOBHm_Chr1g0359031 RchiOBHm_Chr1g0380501 RchiOBHm_Chr2g0122261
rosa_laevigata	RLG00000026291
rosa_multiflora	Rmu_co8212514.1_g000001 Rmu_sc0001733.1_g000002 Rmu_sc0006267.1_g000010 Rmu_sc0006712.1_g000003 Rmu_sc0021603.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279270
rosa_rugosa	Rorug01G0267400 Rorug01G0421300
rosa_samantha	Rh1AG280600 Rh1AG446400 Rh1BG247600 Rh1BG401600 Rh1CG415900 Rh1DG431800 Rh2BG305100 Rh2CG283500
rosa_wichuraiana	Rw1G038830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	437
AciI	CCGC	2 cut(s)	567, 625
AcyI	GRCGYC	1 cut(s)	428
AfaI	GTAC	1 cut(s)	406
AfiI	CCNNNNNNNGG	4 cut(s)	86, 437, 455, 631
AgeI	ACCGGT	1 cut(s)	234
AgsI	TTSAA	3 cut(s)	241, 463, 736
AluBI	AGCT	1 cut(s)	393
AluI	AGCT	1 cut(s)	393
Alw26I	GTCTC	2 cut(s)	84, 89
AoxI	GGCC	2 cut(s)	348, 633
ApeKI	GCWGC	3 cut(s)	100, 374, 564
AsiGI	ACCGGT	1 cut(s)	234
AspLEI	GCGC	3 cut(s)	100, 220, 695
AsuC2I	CCSGG	1 cut(s)	81
AsuHPI	GGTGA	2 cut(s)	119, 360
AsuII	TTCGAA	2 cut(s)	8, 71
BbvI	GCAGC	3 cut(s)	112, 386, 551
BceAI	ACGGC	1 cut(s)	680
BclI	TGATCA	1 cut(s)	604
BcnI	CCSGG	1 cut(s)	81
BcoDI	GTCTC	2 cut(s)	84, 89
BfoI	RGCGCY	1 cut(s)	221
BisI	GCNGC	3 cut(s)	101, 375, 565
BlsI	GCNGC	3 cut(s)	102, 376, 566
Bme1390I	CCNGG	1 cut(s)	81
BmrFI	CCNGG	1 cut(s)	81
BmsI	GCATC	2 cut(s)	544, 663
BpmI	CTGGAG	1 cut(s)	507
Bpu14I	TTCGAA	2 cut(s)	8, 71
BpuEI	CTTGAG	1 cut(s)	415
BpuMI	CCSGG	1 cut(s)	81
BsaBI	GATNNNNATC	1 cut(s)	204
BsaHI	GRCGYC	1 cut(s)	428
BsaI	GGTCTC	1 cut(s)	89
BsaJI	CCNNGG	2 cut(s)	213, 351
BsaWI	WCCGGW	1 cut(s)	234
Bsc4I	CCNNNNNNNGG	4 cut(s)	86, 437, 455, 631
Bse118I	RCCGGY	2 cut(s)	234, 370
Bse1I	ACTGG	3 cut(s)	319, 378, 747
Bse3DI	GCAATG	4 cut(s)	36, 110, 531, 741
Bse8I	GATNNNNATC	1 cut(s)	204
BseDI	CCNNGG	2 cut(s)	213, 351
BseJI	GATNNNNATC	1 cut(s)	204
BseLI	CCNNNNNNNGG	4 cut(s)	86, 437, 455, 631
BseMI	GCAATG	4 cut(s)	36, 110, 531, 741
BseMII	CTCAG	1 cut(s)	380
BseNI	ACTGG	3 cut(s)	319, 378, 747
BseRI	GAGGAG	3 cut(s)	114, 269, 664
BseXI	GCAGC	3 cut(s)	112, 386, 551
Bsh1285I	CGRYCG	1 cut(s)	625
BshFI	GGCC	2 cut(s)	350, 635
BshTI	ACCGGT	1 cut(s)	234
BsiEI	CGRYCG	1 cut(s)	625
BsiSI	CCGG	3 cut(s)	80, 235, 371
BslI	CCNNNNNNNGG	4 cut(s)	86, 437, 455, 631
BsmAI	GTCTC	2 cut(s)	84, 89
BsmI	GAATGC	1 cut(s)	613
BsnI	GGCC	2 cut(s)	350, 635
Bso31I	GGTCTC	1 cut(s)	89
Bsp119I	TTCGAA	2 cut(s)	8, 71
Bsp143I	GATC	5 cut(s)	199, 205, 276, 502, 604
BspACI	CCGC	2 cut(s)	567, 625
BspANI	GGCC	2 cut(s)	350, 635
BspCNI	CTCAG	1 cut(s)	381
BspHI	TCATGA	1 cut(s)	181
BspT104I	TTCGAA	2 cut(s)	8, 71
BspTNI	GGTCTC	1 cut(s)	89
BsrDI	GCAATG	4 cut(s)	36, 110, 531, 741
BsrFI	RCCGGY	2 cut(s)	234, 370
BsrI	ACTGG	3 cut(s)	319, 378, 747
BssAI	RCCGGY	2 cut(s)	234, 370
BssECI	CCNNGG	2 cut(s)	213, 351
BssMI	GATC	5 cut(s)	199, 205, 276, 502, 604
BssNI	GRCGYC	1 cut(s)	428
Bst4CI	ACNGT	1 cut(s)	151
Bst6I	CTCTTC	1 cut(s)	470
BstACI	GRCGYC	1 cut(s)	428
BstBI	TTCGAA	2 cut(s)	8, 71
BstC8I	GCNNGC	2 cut(s)	34, 311
BstDEI	CTNAG	2 cut(s)	94, 389
BstH2I	RGCGCY	1 cut(s)	221
BstHHI	GCGC	3 cut(s)	100, 220, 695
BstKTI	GATC	5 cut(s)	202, 208, 279, 505, 607
BstMAI	GTCTC	2 cut(s)	84, 89
BstMBI	GATC	5 cut(s)	199, 205, 276, 502, 604
BstMCI	CGRYCG	1 cut(s)	625
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 507
BstNSI	RCATGY	1 cut(s)	659
BstSCI	CCNGG	1 cut(s)	79
BstV1I	GCAGC	3 cut(s)	112, 386, 551
BsuRI	GGCC	2 cut(s)	350, 635
BtsI	GCAGTG	1 cut(s)	431
BtsIMutI	CAGTG	1 cut(s)	431
Cac8I	GCNNGC	2 cut(s)	34, 311
CciI	TCATGA	1 cut(s)	181
CfoI	GCGC	3 cut(s)	100, 220, 695
Cfr10I	RCCGGY	2 cut(s)	234, 370
CseI	GACGC	1 cut(s)	436
Csp6I	GTAC	1 cut(s)	405
CspAI	ACCGGT	1 cut(s)	234
CviAII	CATG	4 cut(s)	136, 182, 418, 656
CviJI	RGCY	8 cut(s)	79, 119, 350, 377, 393, 448, 564, 635
CviKI_1	RGCY	8 cut(s)	79, 119, 350, 377, 393, 448, 564, 635
CviQI	GTAC	1 cut(s)	405
DdeI	CTNAG	2 cut(s)	94, 389
DpnI	GATC	5 cut(s)	201, 207, 278, 504, 606
DpnII	GATC	5 cut(s)	199, 205, 276, 502, 604
Eam1104I	CTCTTC	1 cut(s)	470
EarI	CTCTTC	1 cut(s)	470
Eco31I	GGTCTC	1 cut(s)	89
FaeI	CATG	4 cut(s)	139, 185, 421, 659
FaiI	YATR	5 cut(s)	137, 183, 419, 547, 657
FatI	CATG	4 cut(s)	135, 181, 417, 655
FauI	CCCGC	1 cut(s)	560
FbaI	TGATCA	1 cut(s)	604
Fnu4HI	GCNGC	3 cut(s)	101, 375, 565
Fsp4HI	GCNGC	3 cut(s)	101, 375, 565
GlaI	GCGC	3 cut(s)	99, 219, 694
GluI	GCNGC	3 cut(s)	101, 375, 565
GsuI	CTGGAG	1 cut(s)	507
HaeII	RGCGCY	1 cut(s)	221
HaeIII	GGCC	2 cut(s)	350, 635
HapII	CCGG	3 cut(s)	80, 235, 371
HgaI	GACGC	1 cut(s)	436
HhaI	GCGC	3 cut(s)	100, 220, 695
Hin1I	GRCGYC	1 cut(s)	428
Hin1II	CATG	4 cut(s)	139, 185, 421, 659
Hin6I	GCGC	3 cut(s)	98, 218, 693
HinP1I	GCGC	3 cut(s)	98, 218, 693
HinfI	GANTC	5 cut(s)	10, 16, 55, 385, 732
HpaII	CCGG	3 cut(s)	80, 235, 371
HphI	GGTGA	2 cut(s)	119, 360
Hpy166II	GTNNAC	1 cut(s)	141
Hpy188I	TCNGA	9 cut(s)	15, 21, 89, 214, 247, 339, 355, 384, 390
Hpy188III	TCNNGA	5 cut(s)	52, 182, 203, 287, 486
Hpy8I	GTNNAC	1 cut(s)	141
HpyAV	CCTTC	2 cut(s)	449, 529
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4V	TGCA	7 cut(s)	36, 313, 510, 524, 613, 726, 741
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 507
HpyF3I	CTNAG	2 cut(s)	94, 389
Hsp92I	GRCGYC	1 cut(s)	428
Hsp92II	CATG	4 cut(s)	139, 185, 421, 659
HspAI	GCGC	3 cut(s)	98, 218, 693
Ksp22I	TGATCA	1 cut(s)	604
Kzo9I	GATC	5 cut(s)	199, 205, 276, 502, 604
LpnPI	CCDG	9 cut(s)	46, 93, 248, 332, 384, 391, 393, 471, 712
Lsp1109I	GCAGC	3 cut(s)	112, 386, 551
LweI	GCATC	2 cut(s)	544, 663
MaeIII	GTNAC	3 cut(s)	49, 517, 548
MalI	GATC	5 cut(s)	201, 207, 278, 504, 606
MboI	GATC	5 cut(s)	199, 205, 276, 502, 604
MboII	GAAGA	7 cut(s)	424, 475, 478, 481, 484, 487, 544
MluCI	AATT	4 cut(s)	177, 292, 364, 666
MmeI	TCCRAC	1 cut(s)	362
MseI	TTAA	2 cut(s)	230, 495
MspI	CCGG	3 cut(s)	80, 235, 371
MspR9I	CCNGG	1 cut(s)	81
Mva1269I	GAATGC	1 cut(s)	613
MwoI	GCNNNNNNNGC	2 cut(s)	38, 507
NciI	CCSGG	1 cut(s)	81
NdeII	GATC	5 cut(s)	199, 205, 276, 502, 604
NlaIII	CATG	4 cut(s)	139, 185, 421, 659
NmeAIII	GCCGAG	1 cut(s)	39
NmuCI	GTSAC	3 cut(s)	49, 517, 548
NspI	RCATGY	1 cut(s)	659
NspV	TTCGAA	2 cut(s)	8, 71
PagI	TCATGA	1 cut(s)	181
PcsI	WCGNNNNNNNCGW	3 cut(s)	210, 684, 693
PctI	GAATGC	1 cut(s)	613
PfeI	GAWTC	5 cut(s)	10, 16, 55, 385, 732
PflMI	CCANNNNNTGG	1 cut(s)	437
PinAI	ACCGGT	1 cut(s)	234
PkrI	GCNGC	3 cut(s)	102, 376, 566
RsaI	GTAC	1 cut(s)	406
RsaNI	GTAC	1 cut(s)	405
SaqAI	TTAA	2 cut(s)	230, 495
SatI	GCNGC	3 cut(s)	101, 375, 565
Sau3AI	GATC	5 cut(s)	199, 205, 276, 502, 604
ScrFI	CCNGG	1 cut(s)	81
SetI	ASST	7 cut(s)	51, 261, 395, 482, 495, 540, 546
SfaNI	GCATC	2 cut(s)	544, 663
SfuI	TTCGAA	2 cut(s)	8, 71
SmlI	CTYRAG	1 cut(s)	394
SmoI	CTYRAG	1 cut(s)	394
Sse9I	AATT	4 cut(s)	177, 292, 364, 666
SsiI	CCGC	2 cut(s)	567, 625
StyD4I	CCNGG	1 cut(s)	79
TaaI	ACNGT	1 cut(s)	151
TaqI	TCGA	5 cut(s)	8, 71, 204, 275, 678
TasI	AATT	4 cut(s)	177, 292, 364, 666
TatI	WGTACW	1 cut(s)	404
TfiI	GAWTC	5 cut(s)	10, 16, 55, 385, 732
Tru1I	TTAA	2 cut(s)	230, 495
Tru9I	TTAA	2 cut(s)	230, 495
TscAI	CASTG	1 cut(s)	438
TseFI	GTSAC	3 cut(s)	49, 517, 548
TseI	GCWGC	3 cut(s)	100, 374, 564
Tsp45I	GTSAC	3 cut(s)	49, 517, 548
TspDTI	ATGAA	1 cut(s)	170
TspRI	CASTG	1 cut(s)	438
Van91I	CCANNNNNTGG	1 cut(s)	437
XceI	RCATGY	1 cut(s)	659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.