Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005292

Physical Location & Seq

Genomic Coordinates Forward (+)

21483919 .. 21485385

Gene Structure 1467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G52990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGATTTCAAATCCAAGTTTATTATCGTACACTTGCATTGCGAAAGGAACCGTAGTTCTCGCGGAGTTCGTTTCAAGGCAAGAGCCAGGAATCGAAGCTATAGCTTTACGATGCATCGAGAACACGCCTCCTCATCATTCAATGTTTTCTCATACAGTTCACAAGAAGACGTATACATTCGCAATCGACGATGATTCCTTTGTTTATTTCTCGATTTCTGATGAATCCATGGAGAAACCTGAATCATTCTGGGTTTTGAATCGTTTGAGATCAGCTATTGAAGATCTGATTAAAGACGGTGGATCTGATGTTGAGACGCTGATTAATCCTGTTTCTCATTGTCTTCAATTGAAGCTTGATCCAGTTTTCGCTGAGATTGTTGGTGTTGTTGATTTGGAATTATTGGATATGGATTTGGTTGGATCACCGAGGAGTGTAGCGAGAGAGAGTCGAAATCCGAGTATTGATTCATCTAAAGGAAGAAGAGCTGCTTTGATGCCACTTTTGGGGAAACCATTGAAGGCGTTGAAGAAGAAGAAGAGATTGCATAATGAAGCAAAAGGGGGAGATTCTTGTGAGGTTGGTTCGATTCAGGAGATATCAGAGAAGAATGTTGATTTATGTGGGAATGGTAATAATGGAGTCTTACGCAAGGAACTGAGAAATGGTTTGTTGAGTGATCATCATCATAGACAAAAGGCGAAACAGATTTGGAAGAAACATGTTTGGGTTGTGTTGATGTTTGATTTCTGCATCTGTGCTGTTTTGTTTGGAATTTGGCTTTGGATTTGTGAAGGGTTTCAATGCATTCAAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

272

Amino Acids

30.46

Weight (kDa)

6.79

Isoelectric Point (pI)

41.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27840 AT5G52990
fragaria_vesca	FvH4_7g31440
malus_domestica	MD01G1217900.v1.1 MD07G1287600.v1.1
prunus_persica	Prupe.2G309300_v2.0.a1
pyrus_communis	pycom01g22800 pycom07g26050
rosa_chinensis	RchiOBHm_Chr1g0359031 RchiOBHm_Chr1g0380501 RchiOBHm_Chr2g0122261
rosa_laevigata	RLG00000026291
rosa_multiflora	Rmu_co8212514.1_g000001 Rmu_sc0001733.1_g000002 Rmu_sc0006267.1_g000010 Rmu_sc0006712.1_g000003 Rmu_sc0021603.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279270
rosa_rugosa	Rorug01G0267400 Rorug01G0421300
rosa_samantha	Rh1AG280600 Rh1AG446400 Rh1BG247600 Rh1BG401600 Rh1CG415900 Rh1DG431800 Rh2BG305100 Rh2CG283500
rosa_wichuraiana	Rw1G038830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	173
AccII	CGCG	1 cut(s)	62
AciI	CCGC	1 cut(s)	62
AclWI	GGATC	3 cut(s)	310, 353, 430
AcsI	RAATTY	1 cut(s)	774
AfaI	GTAC	1 cut(s)	29
AfiI	CCNNNNNNNGG	1 cut(s)	506
AflIII	ACRYGT	1 cut(s)	721
AjnI	CCWGG	1 cut(s)	85
AjuI	GAANNNNNNNTTGG	2 cut(s)	766, 798
AloI	GAACNNNNNNTCC	2 cut(s)	39, 71
AluBI	AGCT	5 cut(s)	98, 104, 275, 355, 488
AluI	AGCT	5 cut(s)	98, 104, 275, 355, 488
Alw26I	GTCTC	1 cut(s)	308
AlwI	GGATC	3 cut(s)	310, 353, 430
ApeKI	GCWGC	1 cut(s)	488
ApoI	RAATTY	1 cut(s)	774
AseI	ATTAAT	1 cut(s)	324
Asp700I	GAANNNNTTC	1 cut(s)	798
AsuHPI	GGTGA	1 cut(s)	417
BbsI	GAAGAC	2 cut(s)	173, 335
BbvI	GCAGC	1 cut(s)	475
BciT130I	CCWGG	1 cut(s)	87
BclI	TGATCA	1 cut(s)	679
BcoDI	GTCTC	1 cut(s)	308
BfmI	CTRYAG	1 cut(s)	99
BglII	AGATCT	1 cut(s)	283
BisI	GCNGC	1 cut(s)	489
BlsI	GCNGC	1 cut(s)	490
Bme1390I	CCNGG	1 cut(s)	87
BmiI	GGNNCC	1 cut(s)	49
BmrFI	CCNGG	1 cut(s)	87
BmsI	GCATC	4 cut(s)	101, 123, 486, 762
BpiI	GAAGAC	2 cut(s)	173, 335
BsaBI	GATNNNNATC	1 cut(s)	684
BsaJI	CCNNGG	2 cut(s)	228, 428
Bsc4I	CCNNNNNNNGG	1 cut(s)	506
Bse1I	ACTGG	1 cut(s)	362
Bse3DI	GCAATG	1 cut(s)	36
Bse8I	GATNNNNATC	1 cut(s)	684
BseBI	CCWGG	1 cut(s)	87
BseDI	CCNNGG	2 cut(s)	228, 428
BseJI	GATNNNNATC	1 cut(s)	684
BseLI	CCNNNNNNNGG	1 cut(s)	506
BseMI	GCAATG	1 cut(s)	36
BseMII	CTCAG	2 cut(s)	363, 650
BseNI	ACTGG	1 cut(s)	362
BseRI	GAGGAG	2 cut(s)	120, 445
BseXI	GCAGC	1 cut(s)	475
Bsh1236I	CGCG	1 cut(s)	62
BslI	CCNNNNNNNGG	1 cut(s)	506
BsmAI	GTCTC	1 cut(s)	308
BsmBI	CGTCTC	1 cut(s)	308
BsmI	GAATGC	1 cut(s)	807
Bsp143I	GATC	6 cut(s)	269, 283, 302, 358, 422, 679
Bsp19I	CCATGG	1 cut(s)	228
BspACI	CCGC	1 cut(s)	62
BspCNI	CTCAG	2 cut(s)	364, 651
BspFNI	CGCG	1 cut(s)	62
BspLI	GGNNCC	1 cut(s)	49
BspPI	GGATC	3 cut(s)	310, 353, 430
BspQI	GCTCTTC	1 cut(s)	478
BsrDI	GCAATG	1 cut(s)	36
BsrI	ACTGG	1 cut(s)	362
BssECI	CCNNGG	2 cut(s)	228, 428
BssMI	GATC	6 cut(s)	269, 283, 302, 358, 422, 679
BssNAI	GTATAC	1 cut(s)	174
BssT1I	CCWWGG	1 cut(s)	228
Bst1107I	GTATAC	1 cut(s)	174
Bst2UI	CCWGG	1 cut(s)	87
Bst4CI	ACNGT	3 cut(s)	52, 157, 299
Bst6I	CTCTTC	2 cut(s)	478, 533
BstDEI	CTNAG	2 cut(s)	372, 659
BstDSI	CCRYGG	1 cut(s)	228
BstFNI	CGCG	1 cut(s)	62
BstKTI	GATC	6 cut(s)	272, 286, 305, 361, 425, 682
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	6 cut(s)	269, 283, 302, 358, 422, 679
BstNI	CCWGG	1 cut(s)	87
BstNSI	RCATGY	1 cut(s)	725
BstSCI	CCNGG	1 cut(s)	85
BstSFI	CTRYAG	1 cut(s)	99
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	1 cut(s)	475
BstV2I	GAAGAC	2 cut(s)	173, 335
BstX2I	RGATCY	2 cut(s)	283, 302
BstYI	RGATCY	2 cut(s)	283, 302
BstZ17I	GTATAC	1 cut(s)	174
BtgI	CCRYGG	1 cut(s)	228
CseI	GACGC	1 cut(s)	325
Csp6I	GTAC	1 cut(s)	28
CviAII	CATG	2 cut(s)	229, 722
CviJI	RGCY	7 cut(s)	85, 98, 104, 275, 355, 488, 781
CviKI_1	RGCY	7 cut(s)	85, 98, 104, 275, 355, 488, 781
CviQI	GTAC	1 cut(s)	28
DdeI	CTNAG	2 cut(s)	372, 659
DpnI	GATC	6 cut(s)	271, 285, 304, 360, 424, 681
DpnII	GATC	6 cut(s)	269, 283, 302, 358, 422, 679
Eam1104I	CTCTTC	2 cut(s)	478, 533
EarI	CTCTTC	2 cut(s)	478, 533
Eco130I	CCWWGG	1 cut(s)	228
Eco32I	GATATC	1 cut(s)	600
EcoRII	CCWGG	1 cut(s)	85
EcoRV	GATATC	1 cut(s)	600
EcoT14I	CCWWGG	1 cut(s)	228
EcoT22I	ATGCAT	2 cut(s)	116, 809
ErhI	CCWWGG	1 cut(s)	228
Esp3I	CGTCTC	1 cut(s)	308
FaeI	CATG	2 cut(s)	232, 725
FaiI	YATR	9 cut(s)	101, 153, 174, 230, 410, 549, 622, 690, 723
FalI	AAGNNNNNCTT	2 cut(s)	475, 507
FatI	CATG	2 cut(s)	228, 721
FbaI	TGATCA	1 cut(s)	679
FblI	GTMKAC	1 cut(s)	173
Fnu4HI	GCNGC	1 cut(s)	489
Fsp4HI	GCNGC	1 cut(s)	489
GluI	GCNGC	1 cut(s)	489
HgaI	GACGC	1 cut(s)	325
Hin1II	CATG	2 cut(s)	232, 725
HindIII	AAGCTT	1 cut(s)	353
HphI	GGTGA	1 cut(s)	417
Hpy166II	GTNNAC	3 cut(s)	30, 160, 174
Hpy188I	TCNGA	5 cut(s)	220, 288, 307, 459, 604
Hpy188III	TCNNGA	3 cut(s)	118, 211, 593
Hpy8I	GTNNAC	3 cut(s)	30, 160, 174
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	2 cut(s)	514, 788
HpyCH4III	ACNGT	3 cut(s)	52, 157, 299
HpyCH4IV	ACGT	1 cut(s)	170
HpyCH4V	TGCA	5 cut(s)	36, 114, 547, 753, 807
HpyF3I	CTNAG	2 cut(s)	372, 659
HpySE526I	ACGT	1 cut(s)	170
Hsp92II	CATG	2 cut(s)	232, 725
Ksp22I	TGATCA	1 cut(s)	679
Kzo9I	GATC	6 cut(s)	269, 283, 302, 358, 422, 679
LguI	GCTCTTC	1 cut(s)	478
LpnPI	CCDG	7 cut(s)	72, 99, 235, 252, 342, 375, 578
Lsp1109I	GCAGC	1 cut(s)	475
LweI	GCATC	4 cut(s)	101, 123, 486, 762
MaeII	ACGT	1 cut(s)	170
MalI	GATC	6 cut(s)	271, 285, 304, 360, 424, 681
MboI	GATC	6 cut(s)	269, 283, 302, 358, 422, 679
MfeI	CAATTG	1 cut(s)	347
MflI	RGATCY	2 cut(s)	283, 302
MluCI	AATT	3 cut(s)	347, 398, 774
MlyI	GAGTC	2 cut(s)	457, 651
MmeI	TCCRAC	1 cut(s)	400
MnlI	CCTC	4 cut(s)	138, 141, 423, 571
Mph1103I	ATGCAT	2 cut(s)	116, 809
MroXI	GAANNNNTTC	1 cut(s)	798
MseI	TTAA	2 cut(s)	291, 324
MspR9I	CCNGG	1 cut(s)	87
MunI	CAATTG	1 cut(s)	347
Mva1269I	GAATGC	1 cut(s)	807
MvaI	CCWGG	1 cut(s)	87
MvnI	CGCG	1 cut(s)	62
NcoI	CCATGG	1 cut(s)	228
NdeII	GATC	6 cut(s)	269, 283, 302, 358, 422, 679
NlaIII	CATG	2 cut(s)	232, 725
NlaIV	GGNNCC	1 cut(s)	49
NsiI	ATGCAT	2 cut(s)	116, 809
NspI	RCATGY	1 cut(s)	725
PciI	ACATGT	1 cut(s)	721
PciSI	GCTCTTC	1 cut(s)	478
PcsI	WCGNNNNNNNCGW	2 cut(s)	66, 186
PctI	GAATGC	1 cut(s)	807
PdmI	GAANNNNTTC	1 cut(s)	798
PfeI	GAWTC	8 cut(s)	90, 194, 224, 242, 259, 467, 569, 589
PkrI	GCNGC	1 cut(s)	490
PleI	GAGTC	2 cut(s)	456, 650
PpsI	GAGTC	2 cut(s)	456, 650
PscI	ACATGT	1 cut(s)	721
PshBI	ATTAAT	1 cut(s)	324
Psp6I	CCWGG	1 cut(s)	85
PspGI	CCWGG	1 cut(s)	85
PspN4I	GGNNCC	1 cut(s)	49
PsuI	RGATCY	2 cut(s)	283, 302
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
SapI	GCTCTTC	1 cut(s)	478
SaqAI	TTAA	2 cut(s)	291, 324
SatI	GCNGC	1 cut(s)	489
Sau3AI	GATC	6 cut(s)	269, 283, 302, 358, 422, 679
SchI	GAGTC	2 cut(s)	457, 651
ScrFI	CCNGG	1 cut(s)	87
SetI	ASST	8 cut(s)	100, 106, 173, 241, 277, 357, 490, 582
SfaNI	GCATC	4 cut(s)	101, 123, 486, 762
SfcI	CTRYAG	1 cut(s)	99
Sse9I	AATT	3 cut(s)	347, 398, 774
SsiI	CCGC	1 cut(s)	62
StyD4I	CCNGG	1 cut(s)	85
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	3 cut(s)	52, 157, 299
TaiI	ACGT	1 cut(s)	173
TaqI	TCGA	6 cut(s)	93, 117, 186, 212, 451, 587
TasI	AATT	3 cut(s)	347, 398, 774
TfiI	GAWTC	8 cut(s)	90, 194, 224, 242, 259, 467, 569, 589
Tru1I	TTAA	2 cut(s)	291, 324
Tru9I	TTAA	2 cut(s)	291, 324
TseI	GCWGC	1 cut(s)	488
TspDTI	ATGAA	3 cut(s)	237, 459, 567
VspI	ATTAAT	1 cut(s)	324
XapI	RAATTY	1 cut(s)	774
XceI	RCATGY	1 cut(s)	725
XmiI	GTMKAC	1 cut(s)	173
XmnI	GAANNNNTTC	1 cut(s)	798
Zsp2I	ATGCAT	2 cut(s)	116, 809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.