Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8212514.1

Orthogroup ID

OG0005292

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 398

Gene Structure 398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8212514.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 398 bp

cgtcggagatggattcggcggcgtcgacgccggcgagccggaatctgagcatggattcgagtagtagtaaagggaagaaattggtgctggcgccgctgctggggaaccaggggttgaagaagaagaagagattgtctggggaggtgaatggggagctgtgcaaagatgtggtgatgggcacgatggagaagaagctggatgtgggtggtgaggatggaagggatttcgcaatgccggcgctgaagagtgggggtttgcatccgtgtgagcggcagaaggccaagcaggtgtggaggaggcatgtgtgggtggtgctggtgctggacttgttcgtgtgtgccgtcttgtttggggtttggttgtgggtttgcagggggtttaagtgcatcgacagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

131

Amino Acids

14.36

Weight (kDa)

9.35

Isoelectric Point (pI)

33.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27840 AT5G52990
fragaria_vesca	FvH4_7g31440
malus_domestica	MD01G1217900.v1.1 MD07G1287600.v1.1
prunus_persica	Prupe.2G309300_v2.0.a1
pyrus_communis	pycom01g22800 pycom07g26050
rosa_chinensis	RchiOBHm_Chr1g0359031 RchiOBHm_Chr1g0380501 RchiOBHm_Chr2g0122261
rosa_laevigata	RLG00000026291
rosa_multiflora	Rmu_co8212514.1_g000001 Rmu_sc0001733.1_g000002 Rmu_sc0006267.1_g000010 Rmu_sc0006712.1_g000003 Rmu_sc0021603.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279270
rosa_rugosa	Rorug01G0267400 Rorug01G0421300
rosa_samantha	Rh1AG280600 Rh1AG446400 Rh1BG247600 Rh1BG401600 Rh1CG415900 Rh1DG431800 Rh2BG305100 Rh2CG283500
rosa_wichuraiana	Rw1G038830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	276
Acc36I	ACCTGC	1 cut(s)	276
AccB1I	GGYRCC	1 cut(s)	90
AccBSI	CCGCTC	1 cut(s)	270
AccI	GTMKAC	1 cut(s)	25
AciI	CCGC	3 cut(s)	19, 94, 270
AcuI	CTGAAG	1 cut(s)	262
AcyI	GRCGYC	3 cut(s)	22, 28, 91
AfiI	CCNNNNNNNGG	1 cut(s)	100
AgsI	TTSAA	1 cut(s)	117
AjnI	CCWGG	1 cut(s)	107
AluBI	AGCT	2 cut(s)	156, 195
AluI	AGCT	2 cut(s)	156, 195
AoxI	GGCC	1 cut(s)	278
ApeKI	GCWGC	1 cut(s)	96
AspLEI	GCGC	2 cut(s)	93, 240
AsuHPI	GGTGA	3 cut(s)	156, 183, 220
BaeGI	GKGCMC	1 cut(s)	181
BanI	GGYRCC	1 cut(s)	90
BbvI	GCAGC	1 cut(s)	83
BccI	CCATC	4 cut(s)	3, 168, 177, 208
BceAI	ACGGC	1 cut(s)	325
BciT130I	CCWGG	1 cut(s)	109
BfoI	RGCGCY	2 cut(s)	94, 241
BfuAI	ACCTGC	1 cut(s)	276
BisI	GCNGC	4 cut(s)	20, 94, 97, 271
BlsI	GCNGC	4 cut(s)	21, 95, 98, 272
Bme1390I	CCNGG	1 cut(s)	109
BmiI	GGNNCC	2 cut(s)	92, 106
BmrFI	CCNGG	1 cut(s)	109
BmsI	GCATC	1 cut(s)	267
BsaHI	GRCGYC	3 cut(s)	22, 28, 91
BsaJI	CCNNGG	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
Bse118I	RCCGGY	2 cut(s)	30, 234
Bse3DI	GCAATG	1 cut(s)	236
BseBI	CCWGG	1 cut(s)	109
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	3 cut(s)	204, 219, 258
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseMI	GCAATG	1 cut(s)	236
BseMII	CTCAG	1 cut(s)	37
BseRI	GAGGAG	1 cut(s)	309
BseSI	GKGCMC	1 cut(s)	181
BseXI	GCAGC	1 cut(s)	83
BseYI	CCCAGC	1 cut(s)	99
BshFI	GGCC	1 cut(s)	280
BshNI	GGYRCC	1 cut(s)	90
BsiSI	CCGG	3 cut(s)	31, 39, 235
BslI	CCNNNNNNNGG	1 cut(s)	100
BsnI	GGCC	1 cut(s)	280
Bsp1286I	GDGCHC	1 cut(s)	181
BspACI	CCGC	3 cut(s)	19, 94, 270
BspANI	GGCC	1 cut(s)	280
BspCNI	CTCAG	1 cut(s)	38
BspLI	GGNNCC	2 cut(s)	92, 106
BspMI	ACCTGC	1 cut(s)	276
BspT107I	GGYRCC	1 cut(s)	90
BsrBI	CCGCTC	1 cut(s)	270
BsrDI	GCAATG	1 cut(s)	236
BsrFI	RCCGGY	2 cut(s)	30, 234
BssAI	RCCGGY	2 cut(s)	30, 234
BssECI	CCNNGG	1 cut(s)	108
BssNI	GRCGYC	3 cut(s)	22, 28, 91
Bst2UI	CCWGG	1 cut(s)	109
Bst4CI	ACNGT	1 cut(s)	394
Bst6I	CTCTTC	2 cut(s)	121, 238
BstACI	GRCGYC	3 cut(s)	22, 28, 91
BstC8I	GCNNGC	4 cut(s)	32, 36, 89, 236
BstDEI	CTNAG	1 cut(s)	46
BstF5I	GGATG	3 cut(s)	204, 219, 258
BstH2I	RGCGCY	2 cut(s)	94, 241
BstHHI	GCGC	2 cut(s)	93, 240
BstMWI	GCNNNNNNNGC	2 cut(s)	93, 235
BstNI	CCWGG	1 cut(s)	109
BstNSI	RCATGY	1 cut(s)	304
BstSCI	CCNGG	1 cut(s)	107
BstSLI	GKGCMC	1 cut(s)	181
BstV1I	GCAGC	1 cut(s)	83
BsuRI	GGCC	1 cut(s)	280
BtsCI	GGATG	3 cut(s)	204, 219, 258
BveI	ACCTGC	1 cut(s)	276
Cac8I	GCNNGC	4 cut(s)	32, 36, 89, 236
CfoI	GCGC	2 cut(s)	93, 240
Cfr10I	RCCGGY	2 cut(s)	30, 234
CseI	GACGC	2 cut(s)	11, 36
CviAII	CATG	2 cut(s)	51, 301
CviJI	RGCY	4 cut(s)	38, 156, 195, 280
CviKI_1	RGCY	4 cut(s)	38, 156, 195, 280
DdeI	CTNAG	1 cut(s)	46
DinI	GGCGCC	1 cut(s)	92
Eam1104I	CTCTTC	2 cut(s)	121, 238
EarI	CTCTTC	2 cut(s)	121, 238
Eco57I	CTGAAG	1 cut(s)	262
EcoRII	CCWGG	1 cut(s)	107
EgeI	GGCGCC	1 cut(s)	92
EheI	GGCGCC	1 cut(s)	92
FaeI	CATG	2 cut(s)	54, 304
FaiI	YATR	2 cut(s)	52, 302
FatI	CATG	2 cut(s)	50, 300
FblI	GTMKAC	1 cut(s)	25
Fnu4HI	GCNGC	4 cut(s)	20, 94, 97, 271
FokI	GGATG	3 cut(s)	211, 226, 245
Fsp4HI	GCNGC	4 cut(s)	20, 94, 97, 271
GlaI	GCGC	2 cut(s)	92, 239
GluI	GCNGC	4 cut(s)	20, 94, 97, 271
GsaI	CCCAGC	1 cut(s)	103
HaeII	RGCGCY	2 cut(s)	94, 241
HaeIII	GGCC	1 cut(s)	280
HapII	CCGG	3 cut(s)	31, 39, 235
HgaI	GACGC	2 cut(s)	11, 36
HhaI	GCGC	2 cut(s)	93, 240
Hin1I	GRCGYC	3 cut(s)	22, 28, 91
Hin1II	CATG	2 cut(s)	54, 304
Hin6I	GCGC	2 cut(s)	91, 238
HinP1I	GCGC	2 cut(s)	91, 238
HincII	GTYRAC	1 cut(s)	26
HindII	GTYRAC	1 cut(s)	26
HinfI	GANTC	3 cut(s)	13, 42, 55
HpaII	CCGG	3 cut(s)	31, 39, 235
HphI	GGTGA	3 cut(s)	156, 183, 220
Hpy166II	GTNNAC	1 cut(s)	26
Hpy188I	TCNGA	2 cut(s)	6, 47
Hpy8I	GTNNAC	1 cut(s)	26
Hpy99I	CGWCG	2 cut(s)	27, 30
HpyAV	CCTTC	2 cut(s)	212, 270
HpyCH4III	ACNGT	1 cut(s)	394
HpyCH4V	TGCA	4 cut(s)	161, 258, 371, 386
HpyF10VI	GCNNNNNNNGC	2 cut(s)	93, 235
HpyF3I	CTNAG	1 cut(s)	46
Hsp92I	GRCGYC	3 cut(s)	22, 28, 91
Hsp92II	CATG	2 cut(s)	54, 304
HspAI	GCGC	2 cut(s)	91, 238
KasI	GGCGCC	1 cut(s)	90
KroI	GCCGGC	2 cut(s)	30, 234
KroNI	GCCGGC	2 cut(s)	32, 236
LmnI	GCTCC	1 cut(s)	153
Lsp1109I	GCAGC	1 cut(s)	83
LweI	GCATC	1 cut(s)	267
MbiI	CCGCTC	1 cut(s)	270
MboII	GAAGA	7 cut(s)	87, 129, 132, 135, 138, 201, 255
MhlI	GDGCHC	1 cut(s)	181
MluCI	AATT	1 cut(s)	79
Mly113I	GGCGCC	1 cut(s)	91
MnlI	CCTC	4 cut(s)	135, 204, 287, 290
MreI	CGCCGGCG	1 cut(s)	30
MroNI	GCCGGC	2 cut(s)	30, 234
MseI	TTAA	1 cut(s)	380
MslI	CAYNNNNRTG	1 cut(s)	263
MspA1I	CMGCKG	1 cut(s)	96
MspI	CCGG	3 cut(s)	31, 39, 235
MspR9I	CCNGG	1 cut(s)	109
MvaI	CCWGG	1 cut(s)	109
MwoI	GCNNNNNNNGC	2 cut(s)	93, 235
NaeI	GCCGGC	2 cut(s)	32, 236
NarI	GGCGCC	1 cut(s)	91
NgoMIV	GCCGGC	2 cut(s)	30, 234
NlaIII	CATG	2 cut(s)	54, 304
NlaIV	GGNNCC	2 cut(s)	92, 106
NspI	RCATGY	1 cut(s)	304
PaqCI	CACCTGC	1 cut(s)	276
PcsI	WCGNNNNNNNCGW	3 cut(s)	22, 31, 338
PdiI	GCCGGC	2 cut(s)	32, 236
PfeI	GAWTC	3 cut(s)	13, 42, 55
PkrI	GCNGC	4 cut(s)	21, 95, 98, 272
PluTI	GGCGCC	1 cut(s)	94
Psp6I	CCWGG	1 cut(s)	107
PspFI	CCCAGC	1 cut(s)	99
PspGI	CCWGG	1 cut(s)	107
PspN4I	GGNNCC	2 cut(s)	92, 106
RseI	CAYNNNNRTG	1 cut(s)	263
SalI	GTCGAC	1 cut(s)	24
SaqAI	TTAA	1 cut(s)	380
SatI	GCNGC	4 cut(s)	20, 94, 97, 271
ScrFI	CCNGG	1 cut(s)	109
SduI	GDGCHC	1 cut(s)	181
SetI	ASST	4 cut(s)	146, 158, 197, 290
SfaNI	GCATC	1 cut(s)	267
SfoI	GGCGCC	1 cut(s)	92
SgrAI	CRCCGGYG	1 cut(s)	30
SgrDI	CGTCGACG	1 cut(s)	24
SmiMI	CAYNNNNRTG	1 cut(s)	263
Sse9I	AATT	1 cut(s)	79
SsiI	CCGC	3 cut(s)	19, 94, 270
SspDI	GGCGCC	1 cut(s)	90
StyD4I	CCNGG	1 cut(s)	107
TaaI	ACNGT	1 cut(s)	394
TaqI	TCGA	3 cut(s)	25, 58, 389
TasI	AATT	1 cut(s)	79
TauI	GCSGC	3 cut(s)	22, 96, 273
TfiI	GAWTC	3 cut(s)	13, 42, 55
Tru1I	TTAA	1 cut(s)	380
Tru9I	TTAA	1 cut(s)	380
TseI	GCWGC	1 cut(s)	96
TspGWI	ACGGA	1 cut(s)	251
XceI	RCATGY	1 cut(s)	304
XmiI	GTMKAC	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.