RchiOBHm_Chr2g0122261

VAMP-like protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
35237079 .. 35237680
602 bp
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UTR
Exon/CDS
Intron
PRQ49467

Sequence Viewer

Length: 336 bp
ATGATTCCGAATCGGAGCCTGGAATCTTTTGCCCAGAGATCAGCAAGATTGCAAAAAAAACCTGAAATCGGAGCCCTAGCTCAGAAATGCATCGAGAAATCCCCACCGCACCATTCCTTGTACACCCACACCGTCAGAAAGCGAACCTATATCTTCTCAATCGCTGACACTTTTGTGATCATCGGCATTTTCGATCAAGATCTCAATCAATCTGAGGCACTTGTTTTCTTGAATAGATTGAGATGCGATTTGAGAGGATTAATGGAACTGGGTCGGTCTCGGATGGTGGACATTTCGCCTTCCATTGCTTCCAAGCTGAGTTTGATTCGATTATGA

Protein Analysis

111

Amino Acids

12.67

Weight (kDa)

10.01

Isoelectric Point (pI)

55.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 107
AfaI GTAC 1 cut(s) 122
AfiI CCNNNNNNNGG 1 cut(s) 68
AgsI TTSAA 1 cut(s) 232
AjnI CCWGG 1 cut(s) 18
AleI CACNNNNGTG 1 cut(s) 173
AluBI AGCT 2 cut(s) 80, 316
AluI AGCT 2 cut(s) 80, 316
Alw26I GTCTC 1 cut(s) 282
AseI ATTAAT 1 cut(s) 260
BanII GRGCYC 1 cut(s) 76
BccI CCATC 1 cut(s) 277
BciT130I CCWGG 1 cut(s) 20
BclI TGATCA 1 cut(s) 177
BcoDI GTCTC 1 cut(s) 282
BfaI CTAG 1 cut(s) 77
BglII AGATCT 1 cut(s) 199
Bme1390I CCNGG 1 cut(s) 20
BmiI GGNNCC 2 cut(s) 17, 73
BmrFI CCNGG 1 cut(s) 20
BmrI ACTGGG 1 cut(s) 278
BmsI GCATC 2 cut(s) 99, 233
BmuI ACTGGG 1 cut(s) 278
BsaBI GATNNNNATC 2 cut(s) 198, 204
BsaI GGTCTC 1 cut(s) 282
Bsc4I CCNNNNNNNGG 1 cut(s) 68
Bse1I ACTGG 1 cut(s) 273
Bse3DI GCAATG 1 cut(s) 303
Bse8I GATNNNNATC 2 cut(s) 198, 204
BseBI CCWGG 1 cut(s) 20
BseGI GGATG 1 cut(s) 288
BseJI GATNNNNATC 2 cut(s) 198, 204
BseLI CCNNNNNNNGG 1 cut(s) 68
BseMI GCAATG 1 cut(s) 303
BseMII CTCAG 3 cut(s) 95, 204, 308
BseNI ACTGG 1 cut(s) 273
BslI CCNNNNNNNGG 1 cut(s) 68
BsmAI GTCTC 1 cut(s) 282
Bso31I GGTCTC 1 cut(s) 282
Bsp1286I GDGCHC 1 cut(s) 76
Bsp1407I TGTACA 1 cut(s) 120
Bsp143I GATC 4 cut(s) 38, 177, 193, 199
BspACI CCGC 1 cut(s) 107
BspCNI CTCAG 3 cut(s) 94, 205, 309
BspLI GGNNCC 2 cut(s) 17, 73
BspTNI GGTCTC 1 cut(s) 282
BsrDI GCAATG 1 cut(s) 303
BsrGI TGTACA 1 cut(s) 120
BsrI ACTGG 1 cut(s) 273
BssMI GATC 4 cut(s) 38, 177, 193, 199
Bst2UI CCWGG 1 cut(s) 20
Bst4CI ACNGT 1 cut(s) 133
BstAUI TGTACA 1 cut(s) 120
BstDEI CTNAG 3 cut(s) 81, 213, 317
BstF5I GGATG 1 cut(s) 288
BstKTI GATC 4 cut(s) 41, 180, 196, 202
BstMAI GTCTC 1 cut(s) 282
BstMBI GATC 4 cut(s) 38, 177, 193, 199
BstNI CCWGG 1 cut(s) 20
BstSCI CCNGG 1 cut(s) 18
BstX2I RGATCY 1 cut(s) 199
BstYI RGATCY 1 cut(s) 199
BtsCI GGATG 1 cut(s) 288
Csp6I GTAC 1 cut(s) 121
CviJI RGCY 4 cut(s) 18, 74, 80, 316
CviKI_1 RGCY 4 cut(s) 18, 74, 80, 316
CviQI GTAC 1 cut(s) 121
DdeI CTNAG 3 cut(s) 81, 213, 317
DpnI GATC 4 cut(s) 40, 179, 195, 201
DpnII GATC 4 cut(s) 38, 177, 193, 199
Eco24I GRGCYC 1 cut(s) 76
Eco31I GGTCTC 1 cut(s) 282
EcoRII CCWGG 1 cut(s) 18
EcoT22I ATGCAT 1 cut(s) 92
EcoT38I GRGCYC 1 cut(s) 76
FaiI YATR 2 cut(s) 150, 334
FbaI TGATCA 1 cut(s) 177
FokI GGATG 1 cut(s) 295
FriOI GRGCYC 1 cut(s) 76
FspBI CTAG 1 cut(s) 77
HinfI GANTC 4 cut(s) 4, 10, 23, 325
Hpy166II GTNNAC 2 cut(s) 123, 289
Hpy188I TCNGA 7 cut(s) 9, 15, 71, 84, 137, 214, 282
Hpy188III TCNNGA 3 cut(s) 94, 197, 229
Hpy8I GTNNAC 2 cut(s) 123, 289
HpyAV CCTTC 1 cut(s) 309
HpyCH4III ACNGT 1 cut(s) 133
HpyCH4V TGCA 2 cut(s) 52, 90
HpyF3I CTNAG 3 cut(s) 81, 213, 317
Ksp22I TGATCA 1 cut(s) 177
Kzo9I GATC 4 cut(s) 38, 177, 193, 199
LmnI GCTCC 2 cut(s) 15, 71
LpnPI CCDG 5 cut(s) 5, 32, 47, 75, 254
LweI GCATC 2 cut(s) 99, 233
MaeI CTAG 1 cut(s) 77
MalI GATC 4 cut(s) 40, 179, 195, 201
MboI GATC 4 cut(s) 38, 177, 193, 199
MboII GAAGA 1 cut(s) 145
MflI RGATCY 1 cut(s) 199
MhlI GDGCHC 1 cut(s) 76
MnlI CCTC 2 cut(s) 208, 248
Mph1103I ATGCAT 1 cut(s) 92
MseI TTAA 1 cut(s) 260
MslI CAYNNNNRTG 1 cut(s) 173
MspR9I CCNGG 1 cut(s) 20
MvaI CCWGG 1 cut(s) 20
NdeII GATC 4 cut(s) 38, 177, 193, 199
NlaIV GGNNCC 2 cut(s) 17, 73
NsiI ATGCAT 1 cut(s) 92
OliI CACNNNNGTG 1 cut(s) 173
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PfeI GAWTC 4 cut(s) 4, 10, 23, 325
PshBI ATTAAT 1 cut(s) 260
Psp6I CCWGG 1 cut(s) 18
PspGI CCWGG 1 cut(s) 18
PspN4I GGNNCC 2 cut(s) 17, 73
PsuI RGATCY 1 cut(s) 199
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
RseI CAYNNNNRTG 1 cut(s) 173
SaqAI TTAA 1 cut(s) 260
Sau3AI GATC 4 cut(s) 38, 177, 193, 199
ScrFI CCNGG 1 cut(s) 20
SduI GDGCHC 1 cut(s) 76
SetI ASST 4 cut(s) 64, 82, 149, 318
SfaNI GCATC 2 cut(s) 99, 233
SmiMI CAYNNNNRTG 1 cut(s) 173
SsiI CCGC 1 cut(s) 107
SspMI CTAG 1 cut(s) 77
StyD4I CCNGG 1 cut(s) 18
TaaI ACNGT 1 cut(s) 133
TaqI TCGA 3 cut(s) 93, 192, 328
TaqII GACCGA 1 cut(s) 264
TatI WGTACW 1 cut(s) 120
TfiI GAWTC 4 cut(s) 4, 10, 23, 325
Tru1I TTAA 1 cut(s) 260
Tru9I TTAA 1 cut(s) 260
VspI ATTAAT 1 cut(s) 260
XspI CTAG 1 cut(s) 77
Zsp2I ATGCAT 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.