Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005292

Physical Location & Seq

Genomic Coordinates Reverse (-)

50992979 .. 50993798

Gene Structure 820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58411

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGATTTCGAATCCAAGTCTGATCTACTACGCCTGCATTGCCCAGAAGATCGGCAAGATTGCGAAAAATCCCGAAATCGGAGCCCTAGCTCATAAATGCATCGAGAAATCCCCACCGCACCATTCCTTGTACACCCATACCGTCAGAAAGCGAACCTATATCTTCTCAATGGCTGACCCTTTTGTGATCTTCGGCATTTTCGATCAAGATCTCAATCAATCTGAGGCGCTTTTGTTCTTGAATAGATTGAGATGCGACGTCGAGAGGATTAATGGAACTGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

94

Amino Acids

10.65

Weight (kDa)

8.88

Isoelectric Point (pI)

46.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27840 AT5G52990
fragaria_vesca	FvH4_7g31440
malus_domestica	MD01G1217900.v1.1 MD07G1287600.v1.1
prunus_persica	Prupe.2G309300_v2.0.a1
pyrus_communis	pycom01g22800 pycom07g26050
rosa_chinensis	RchiOBHm_Chr1g0359031 RchiOBHm_Chr1g0380501 RchiOBHm_Chr2g0122261
rosa_laevigata	RLG00000026291
rosa_multiflora	Rmu_co8212514.1_g000001 Rmu_sc0001733.1_g000002 Rmu_sc0006267.1_g000010 Rmu_sc0006712.1_g000003 Rmu_sc0021603.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279270
rosa_rugosa	Rorug01G0267400 Rorug01G0421300
rosa_samantha	Rh1AG280600 Rh1AG446400 Rh1BG247600 Rh1BG401600 Rh1CG415900 Rh1DG431800 Rh2BG305100 Rh2CG283500
rosa_wichuraiana	Rw1G038830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	261
AciI	CCGC	1 cut(s)	116
AcyI	GRCGYC	1 cut(s)	258
AfaI	GTAC	1 cut(s)	131
AfiI	CCNNNNNNNGG	1 cut(s)	77
AgsI	TTSAA	1 cut(s)	241
AluBI	AGCT	1 cut(s)	89
AluI	AGCT	1 cut(s)	89
AseI	ATTAAT	1 cut(s)	270
AspLEI	GCGC	1 cut(s)	229
AsuII	TTCGAA	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	85
BfaI	CTAG	1 cut(s)	86
BfoI	RGCGCY	1 cut(s)	230
BglII	AGATCT	1 cut(s)	208
BmiI	GGNNCC	1 cut(s)	82
BmsI	GCATC	2 cut(s)	108, 242
Bpu14I	TTCGAA	1 cut(s)	8
BsaBI	GATNNNNATC	2 cut(s)	207, 213
BsaHI	GRCGYC	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	1 cut(s)	77
Bse1I	ACTGG	1 cut(s)	283
Bse3DI	GCAATG	1 cut(s)	36
Bse8I	GATNNNNATC	2 cut(s)	207, 213
BseJI	GATNNNNATC	2 cut(s)	207, 213
BseLI	CCNNNNNNNGG	1 cut(s)	77
BseMI	GCAATG	1 cut(s)	36
BseMII	CTCAG	1 cut(s)	213
BseNI	ACTGG	1 cut(s)	283
BslI	CCNNNNNNNGG	1 cut(s)	77
Bsp119I	TTCGAA	1 cut(s)	8
Bsp1286I	GDGCHC	1 cut(s)	85
Bsp1407I	TGTACA	1 cut(s)	129
Bsp143I	GATC	5 cut(s)	21, 48, 186, 202, 208
BspACI	CCGC	1 cut(s)	116
BspCNI	CTCAG	1 cut(s)	214
BspLI	GGNNCC	1 cut(s)	82
BspT104I	TTCGAA	1 cut(s)	8
BsrDI	GCAATG	1 cut(s)	36
BsrGI	TGTACA	1 cut(s)	129
BsrI	ACTGG	1 cut(s)	283
BssMI	GATC	5 cut(s)	21, 48, 186, 202, 208
BssNI	GRCGYC	1 cut(s)	258
Bst4CI	ACNGT	1 cut(s)	142
BstACI	GRCGYC	1 cut(s)	258
BstAUI	TGTACA	1 cut(s)	129
BstBI	TTCGAA	1 cut(s)	8
BstC8I	GCNNGC	1 cut(s)	34
BstDEI	CTNAG	1 cut(s)	222
BstH2I	RGCGCY	1 cut(s)	230
BstHHI	GCGC	1 cut(s)	229
BstKTI	GATC	5 cut(s)	24, 51, 189, 205, 211
BstMBI	GATC	5 cut(s)	21, 48, 186, 202, 208
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
Cac8I	GCNNGC	1 cut(s)	34
CfoI	GCGC	1 cut(s)	229
Csp6I	GTAC	1 cut(s)	130
CviJI	RGCY	3 cut(s)	83, 89, 173
CviKI_1	RGCY	3 cut(s)	83, 89, 173
CviQI	GTAC	1 cut(s)	130
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	5 cut(s)	23, 50, 188, 204, 210
DpnII	GATC	5 cut(s)	21, 48, 186, 202, 208
Eco24I	GRGCYC	1 cut(s)	85
EcoT22I	ATGCAT	1 cut(s)	101
EcoT38I	GRGCYC	1 cut(s)	85
FaiI	YATR	3 cut(s)	93, 138, 159
FriOI	GRGCYC	1 cut(s)	85
FspBI	CTAG	1 cut(s)	86
GlaI	GCGC	1 cut(s)	228
HaeII	RGCGCY	1 cut(s)	230
HhaI	GCGC	1 cut(s)	229
Hin1I	GRCGYC	1 cut(s)	258
Hin6I	GCGC	1 cut(s)	227
HinP1I	GCGC	1 cut(s)	227
HinfI	GANTC	1 cut(s)	10
Hpy166II	GTNNAC	1 cut(s)	132
Hpy188I	TCNGA	4 cut(s)	21, 80, 146, 223
Hpy188III	TCNNGA	5 cut(s)	71, 103, 206, 238, 262
Hpy8I	GTNNAC	1 cut(s)	132
Hpy99I	CGWCG	2 cut(s)	260, 263
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	2 cut(s)	36, 99
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	1 cut(s)	222
HpySE526I	ACGT	1 cut(s)	258
Hsp92I	GRCGYC	1 cut(s)	258
HspAI	GCGC	1 cut(s)	227
Kzo9I	GATC	5 cut(s)	21, 48, 186, 202, 208
LmnI	GCTCC	1 cut(s)	80
LpnPI	CCDG	3 cut(s)	46, 56, 264
LweI	GCATC	2 cut(s)	108, 242
MaeI	CTAG	1 cut(s)	86
MaeII	ACGT	1 cut(s)	258
MalI	GATC	5 cut(s)	23, 50, 188, 204, 210
MboI	GATC	5 cut(s)	21, 48, 186, 202, 208
MboII	GAAGA	3 cut(s)	58, 154, 181
MflI	RGATCY	1 cut(s)	208
MhlI	GDGCHC	1 cut(s)	85
MnlI	CCTC	2 cut(s)	217, 258
Mph1103I	ATGCAT	1 cut(s)	101
MseI	TTAA	1 cut(s)	270
MwoI	GCNNNNNNNGC	1 cut(s)	38
NdeII	GATC	5 cut(s)	21, 48, 186, 202, 208
NlaIV	GGNNCC	1 cut(s)	82
NsiI	ATGCAT	1 cut(s)	101
NspV	TTCGAA	1 cut(s)	8
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PfeI	GAWTC	1 cut(s)	10
PshBI	ATTAAT	1 cut(s)	270
PspN4I	GGNNCC	1 cut(s)	82
PsuI	RGATCY	1 cut(s)	208
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
SaqAI	TTAA	1 cut(s)	270
Sau3AI	GATC	5 cut(s)	21, 48, 186, 202, 208
SduI	GDGCHC	1 cut(s)	85
SetI	ASST	3 cut(s)	91, 158, 261
SfaNI	GCATC	2 cut(s)	108, 242
SfuI	TTCGAA	1 cut(s)	8
SsiI	CCGC	1 cut(s)	116
SspMI	CTAG	1 cut(s)	86
TaaI	ACNGT	1 cut(s)	142
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	4 cut(s)	8, 102, 201, 261
TatI	WGTACW	1 cut(s)	129
TfiI	GAWTC	1 cut(s)	10
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
VspI	ATTAAT	1 cut(s)	270
XspI	CTAG	1 cut(s)	86
ZraI	GACGTC	1 cut(s)	259
Zsp2I	ATGCAT	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.