Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005292

Physical Location & Seq

Genomic Coordinates Reverse (-)

35430602 .. 35430981

Gene Structure 380 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG305100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGATTCCGAATCGGAGCCTGGAATCTTTTGCCCAGAAGATCAACAAGATTGCAAAAAATCCCCAAATCGGAGCCCTAACTCAGAAATGCATCGAGAAATCCCCACCGCACCATTCCTTGTACACCCACACCGTCAGAAAGCGAACCTATATCTTCTCAATCGCTGACACCTTTGTGATCATCGGCATTTTCGATCAAGATCTCAATCAATCTGAGACACTTGTTTTCTTGAATAGATTGAGATGCGATTTGAGAGGATTAATGGAACTGGGTTGGTCTCGGATGGTGGACATTTGGCCTTCCATTGCTTCCAAGCTGAGTTTGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

109

Amino Acids

12.53

Weight (kDa)

9.56

Isoelectric Point (pI)

40.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27840 AT5G52990
fragaria_vesca	FvH4_7g31440
malus_domestica	MD01G1217900.v1.1 MD07G1287600.v1.1
prunus_persica	Prupe.2G309300_v2.0.a1
pyrus_communis	pycom01g22800 pycom07g26050
rosa_chinensis	RchiOBHm_Chr1g0359031 RchiOBHm_Chr1g0380501 RchiOBHm_Chr2g0122261
rosa_laevigata	RLG00000026291
rosa_multiflora	Rmu_co8212514.1_g000001 Rmu_sc0001733.1_g000002 Rmu_sc0006267.1_g000010 Rmu_sc0006712.1_g000003 Rmu_sc0021603.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279270
rosa_rugosa	Rorug01G0267400 Rorug01G0421300
rosa_samantha	Rh1AG280600 Rh1AG446400 Rh1BG247600 Rh1BG401600 Rh1CG415900 Rh1DG431800 Rh2BG305100 Rh2CG283500
rosa_wichuraiana	Rw1G038830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	107
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	1 cut(s)	68
AgsI	TTSAA	2 cut(s)	232, 325
AjnI	CCWGG	1 cut(s)	18
AleI	CACNNNNGTG	1 cut(s)	173
AluBI	AGCT	1 cut(s)	316
AluI	AGCT	1 cut(s)	316
Alw26I	GTCTC	2 cut(s)	209, 282
AoxI	GGCC	1 cut(s)	296
AseI	ATTAAT	1 cut(s)	260
BanII	GRGCYC	1 cut(s)	76
BccI	CCATC	1 cut(s)	277
BciT130I	CCWGG	1 cut(s)	20
BclI	TGATCA	1 cut(s)	177
BcoDI	GTCTC	2 cut(s)	209, 282
BglII	AGATCT	1 cut(s)	199
Bme1390I	CCNGG	1 cut(s)	20
BmiI	GGNNCC	2 cut(s)	17, 73
BmrFI	CCNGG	1 cut(s)	20
BmrI	ACTGGG	1 cut(s)	278
BmsI	GCATC	2 cut(s)	99, 233
BmuI	ACTGGG	1 cut(s)	278
BsaBI	GATNNNNATC	2 cut(s)	198, 204
BsaI	GGTCTC	1 cut(s)	282
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
Bse1I	ACTGG	1 cut(s)	273
Bse3DI	GCAATG	1 cut(s)	303
Bse8I	GATNNNNATC	2 cut(s)	198, 204
BseBI	CCWGG	1 cut(s)	20
BseGI	GGATG	1 cut(s)	288
BseJI	GATNNNNATC	2 cut(s)	198, 204
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseMI	GCAATG	1 cut(s)	303
BseMII	CTCAG	3 cut(s)	95, 204, 308
BseNI	ACTGG	1 cut(s)	273
BshFI	GGCC	1 cut(s)	298
BslI	CCNNNNNNNGG	1 cut(s)	68
BsmAI	GTCTC	2 cut(s)	209, 282
BsnI	GGCC	1 cut(s)	298
Bso31I	GGTCTC	1 cut(s)	282
Bsp1286I	GDGCHC	1 cut(s)	76
Bsp1407I	TGTACA	1 cut(s)	120
Bsp143I	GATC	4 cut(s)	39, 177, 193, 199
BspACI	CCGC	1 cut(s)	107
BspANI	GGCC	1 cut(s)	298
BspCNI	CTCAG	3 cut(s)	94, 205, 309
BspLI	GGNNCC	2 cut(s)	17, 73
BspTNI	GGTCTC	1 cut(s)	282
BsrDI	GCAATG	1 cut(s)	303
BsrGI	TGTACA	1 cut(s)	120
BsrI	ACTGG	1 cut(s)	273
BssMI	GATC	4 cut(s)	39, 177, 193, 199
Bst2UI	CCWGG	1 cut(s)	20
Bst4CI	ACNGT	1 cut(s)	133
BstAUI	TGTACA	1 cut(s)	120
BstDEI	CTNAG	3 cut(s)	81, 213, 317
BstF5I	GGATG	1 cut(s)	288
BstKTI	GATC	4 cut(s)	42, 180, 196, 202
BstMAI	GTCTC	2 cut(s)	209, 282
BstMBI	GATC	4 cut(s)	39, 177, 193, 199
BstNI	CCWGG	1 cut(s)	20
BstSCI	CCNGG	1 cut(s)	18
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
BsuRI	GGCC	1 cut(s)	298
BtsCI	GGATG	1 cut(s)	288
Csp6I	GTAC	1 cut(s)	121
CviJI	RGCY	4 cut(s)	18, 74, 298, 316
CviKI_1	RGCY	4 cut(s)	18, 74, 298, 316
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	3 cut(s)	81, 213, 317
DpnI	GATC	4 cut(s)	41, 179, 195, 201
DpnII	GATC	4 cut(s)	39, 177, 193, 199
Eco24I	GRGCYC	1 cut(s)	76
Eco31I	GGTCTC	1 cut(s)	282
EcoRII	CCWGG	1 cut(s)	18
EcoT22I	ATGCAT	1 cut(s)	92
EcoT38I	GRGCYC	1 cut(s)	76
FaiI	YATR	1 cut(s)	150
FbaI	TGATCA	1 cut(s)	177
FokI	GGATG	1 cut(s)	295
FriOI	GRGCYC	1 cut(s)	76
HaeIII	GGCC	1 cut(s)	298
HinfI	GANTC	3 cut(s)	4, 10, 23
Hpy166II	GTNNAC	2 cut(s)	123, 289
Hpy188I	TCNGA	7 cut(s)	9, 15, 71, 84, 137, 214, 282
Hpy188III	TCNNGA	3 cut(s)	94, 197, 229
Hpy8I	GTNNAC	2 cut(s)	123, 289
HpyAV	CCTTC	1 cut(s)	309
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4V	TGCA	2 cut(s)	53, 90
HpyF3I	CTNAG	3 cut(s)	81, 213, 317
Ksp22I	TGATCA	1 cut(s)	177
Kzo9I	GATC	4 cut(s)	39, 177, 193, 199
LmnI	GCTCC	2 cut(s)	15, 71
LpnPI	CCDG	4 cut(s)	5, 32, 47, 254
LweI	GCATC	2 cut(s)	99, 233
MalI	GATC	4 cut(s)	41, 179, 195, 201
MboI	GATC	4 cut(s)	39, 177, 193, 199
MboII	GAAGA	2 cut(s)	49, 145
MflI	RGATCY	1 cut(s)	199
MhlI	GDGCHC	1 cut(s)	76
MluCI	AATT	1 cut(s)	325
MnlI	CCTC	1 cut(s)	248
Mph1103I	ATGCAT	1 cut(s)	92
MseI	TTAA	1 cut(s)	260
MslI	CAYNNNNRTG	1 cut(s)	173
MspR9I	CCNGG	1 cut(s)	20
MvaI	CCWGG	1 cut(s)	20
NdeII	GATC	4 cut(s)	39, 177, 193, 199
NlaIV	GGNNCC	2 cut(s)	17, 73
NsiI	ATGCAT	1 cut(s)	92
OliI	CACNNNNGTG	1 cut(s)	173
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PfeI	GAWTC	3 cut(s)	4, 10, 23
PshBI	ATTAAT	1 cut(s)	260
Psp6I	CCWGG	1 cut(s)	18
PspGI	CCWGG	1 cut(s)	18
PspN4I	GGNNCC	2 cut(s)	17, 73
PsuI	RGATCY	1 cut(s)	199
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
RseI	CAYNNNNRTG	1 cut(s)	173
SaqAI	TTAA	1 cut(s)	260
Sau3AI	GATC	4 cut(s)	39, 177, 193, 199
ScrFI	CCNGG	1 cut(s)	20
SduI	GDGCHC	1 cut(s)	76
SetI	ASST	3 cut(s)	149, 173, 318
SfaNI	GCATC	2 cut(s)	99, 233
SmiMI	CAYNNNNRTG	1 cut(s)	173
Sse9I	AATT	1 cut(s)	325
SsiI	CCGC	1 cut(s)	107
StyD4I	CCNGG	1 cut(s)	18
TaaI	ACNGT	1 cut(s)	133
TaqI	TCGA	2 cut(s)	93, 192
TasI	AATT	1 cut(s)	325
TatI	WGTACW	1 cut(s)	120
TfiI	GAWTC	3 cut(s)	4, 10, 23
Tru1I	TTAA	1 cut(s)	260
Tru9I	TTAA	1 cut(s)	260
VspI	ATTAAT	1 cut(s)	260
Zsp2I	ATGCAT	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.