AT4G33600

Protein of unknown function (DUF563)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0004099
Physical Location & Seq
Reverse (-)
16144391 .. 16145903
1513 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G33600.1

Sequence Viewer

Length: 1413 bp
ATGACTAAACGCAGCGTTTCAAGGAATCTAGTTACTTGCTTAGCCTCCCCTAAGTTCTCCTTGAACGTCTTGTGTCTTGTCGTCACAGTTTTTGTTCTTCTTCAAATCTGGTCATTTCACATTACCCAACAACCCATTTTACTTCCTCCTTCACTATTCACATATCTAAAAGAACAACAACAAGAACCTGAACAAATAAAATCTGAGAACGAGACGGCTTACTTGGTGGAGAAACTACGTGAGTCGGTAACATTCCTTCCCCTGAAAGACCTTCGTTTTTCAAACAAACCACTTGAAGGTCATACTTGGTTTATGAGCTCTCTCTACGATAACCAAACAAAAGGTGAGGTTCAATATCAAGAATTTCCTTCGGAATCTTCGAAAGGAAGGCTTTTGTGCTTGAAAGGGGTTGATGAGCATGATGGATCATGGAACTACTATGCACTGGCTTGGCCTCAAGCTCTTCCTGTCAATGCCAGTCTCCAGGAGGGATTGACATTTGTCTCGTATAATCATTACGATTACGGTAATATGTGGCATGGACTGTCCGCCATGGTCCCATTTGTTGCTTGGAGCTTAAGACACCAGTGCGAAAATCCTCAAAGATGGGTTTTATACCATTGGGGAGAACTCAGGTTCAAGATGGGGAATTGGTTGAACGAGATAATCACAGCGACTTACGGTCAGAACACAGAATTTTTACGGTTTCGTGATAAGAACAGGCCGGTTTGCTTTGAGAAGGCGGTTGTTATGAGACATAATGAAGGTGGAATGTCAAGGGAGAGAAGAATGGAAGTCTTTGATCTCATTAGATGCAAAGCCAGACACTATTGTAACATAAGCTTGTCCGAGACATCAAAATCACGAATAGGTATGACATTGCTAATGAGAACCGGACCAAGATCATTCAAGAATGAGTCAGCCGTGATCGATATCTTTAAGAGAGAGTGTAAAAATGTAGAAGGGTGTGAATTGAAAGTTTCTTATTCAAATAATCTAACATTCTGTGAGCAAGTGGAGCTGATGAGAATGACCGATGTGTTAGTATCACCACACGGTGCACAACTTACTAATTTGGTTCTAATGGACAGAAATAGTAGCGTGATGGAATTTCTCCCTAAAGGATGGCGTAAGCTTGCAGGAGTTGGTCAGCTTGTGTACCAATGGGGAACTAGGTGGTCAGGAATGAGACATGAAGGCTCGTGGCATGACCCGGATGGGGAAATATGTCAGTTTCCCGATACTGATAGGCGATGTATGTCGTCCGTCTATAAGAACGGTAGGATCGGATACAATGAGACTTATTTTGGCGAGTGGGCAAAAAGTGTTTTGGGTAAGTTTAAAGAAAGAAAGATGGCAAATGTTGTAGGACGCAAACACAGTTATGGTTCGCTAGATGGATGTTGGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF563

Protein Analysis

470

Amino Acids

54.62

Weight (kDa)

8.79

Isoelectric Point (pI)

47.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_61 PF04577 218 - 369 1.5e-15 Glycosyltransferase 61
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 549, 743
AclWI GGATC 2 cut(s) 433, 1292
AcsI RAATTY 3 cut(s) 362, 695, 1109
AdeI CACNNNGTG 1 cut(s) 1058
AfaI GTAC 1 cut(s) 1160
AfiI CCNNNNNNNGG 2 cut(s) 296, 1219
AflII CTTAAG 1 cut(s) 577
AhdI GACNNNNNGTC 1 cut(s) 681
AjnI CCWGG 1 cut(s) 483
AluBI AGCT 7 cut(s) 318, 461, 576, 843, 1021, 1135, 1153
AluI AGCT 7 cut(s) 318, 461, 576, 843, 1021, 1135, 1153
Alw21I GWGCWC 2 cut(s) 320, 1063
Alw26I GTCTC 7 cut(s) 206, 485, 508, 748, 845, 1183, 1292
Alw44I GTGCAC 1 cut(s) 1059
AlwI GGATC 2 cut(s) 433, 1292
AoxI GGCC 2 cut(s) 452, 722
ApaLI GTGCAC 1 cut(s) 1059
ApeKI GCWGC 1 cut(s) 12
ApoI RAATTY 3 cut(s) 362, 695, 1109
AspS9I GGNCC 2 cut(s) 556, 896
AsuC2I CCSGG 1 cut(s) 1214
AsuHPI GGTGA 2 cut(s) 356, 1041
AsuII TTCGAA 1 cut(s) 380
AvaII GGWCC 2 cut(s) 556, 896
BaeGI GKGCMC 1 cut(s) 1063
BanII GRGCYC 1 cut(s) 320
BarI GAAGNNNNNNTAC 2 cut(s) 240, 272
BauI CACGAG 1 cut(s) 1201
Bbv12I GWGCWC 2 cut(s) 320, 1063
BbvI GCAGC 1 cut(s) 24
BccI CCATC 8 cut(s) 416, 600, 637, 1099, 1119, 1211, 1348, 1391
BceAI ACGGC 2 cut(s) 231, 908
BciT130I CCWGG 1 cut(s) 485
BciVI GTATCC 1 cut(s) 1283
BcnI CCSGG 1 cut(s) 1214
BcoDI GTCTC 7 cut(s) 206, 485, 508, 748, 845, 1183, 1292
BfaI CTAG 3 cut(s) 29, 1173, 1394
BfrI CTTAAG 1 cut(s) 577
BfuI GTATCC 1 cut(s) 1283
BisI GCNGC 1 cut(s) 13
BlpI GCTNAGC 1 cut(s) 40
BlsI GCNGC 1 cut(s) 14
Bme1390I CCNGG 2 cut(s) 485, 1214
Bme18I GGWCC 2 cut(s) 556, 896
BmeRI GACNNNNNGTC 1 cut(s) 681
BmgT120I GGNCC 2 cut(s) 556, 896
BmiI GGNNCC 1 cut(s) 558
BmrFI CCNGG 2 cut(s) 485, 1214
BmsI GCATC 1 cut(s) 803
BoxI GACNNNNGTC 1 cut(s) 500
BpmI CTGGAG 1 cut(s) 467
Bpu1102I GCTNAGC 1 cut(s) 40
Bpu14I TTCGAA 1 cut(s) 380
BpuEI CTTGAG 1 cut(s) 441
BpuMI CCSGG 1 cut(s) 1214
Bsa29I ATCGAT 1 cut(s) 930
BsaAI YACGTR 1 cut(s) 239
BsaBI GATNNNNATC 1 cut(s) 932
BsaJI CCNNGG 1 cut(s) 552
BsaWI WCCGGW 1 cut(s) 893
Bsc4I CCNNNNNNNGG 2 cut(s) 296, 1219
Bse118I RCCGGY 1 cut(s) 724
Bse1I ACTGG 3 cut(s) 450, 477, 586
Bse3DI GCAATG 1 cut(s) 878
Bse8I GATNNNNATC 1 cut(s) 932
BseBI CCWGG 1 cut(s) 485
BseCI ATCGAT 1 cut(s) 930
BseDI CCNNGG 1 cut(s) 552
BseGI GGATG 3 cut(s) 1130, 1222, 1406
BseJI GATNNNNATC 1 cut(s) 932
BseLI CCNNNNNNNGG 2 cut(s) 296, 1219
BseMI GCAATG 1 cut(s) 878
BseMII CTCAG 2 cut(s) 195, 646
BseNI ACTGG 3 cut(s) 450, 477, 586
BseSI GKGCMC 1 cut(s) 1063
BseXI GCAGC 1 cut(s) 24
BshFI GGCC 2 cut(s) 454, 724
BshVI ATCGAT 1 cut(s) 930
BsiHKAI GWGCWC 2 cut(s) 320, 1063
BsiSI CCGG 3 cut(s) 725, 894, 1214
BslFI GGGAC 1 cut(s) 542
BslI CCNNNNNNNGG 2 cut(s) 296, 1219
BsmAI GTCTC 7 cut(s) 206, 485, 508, 748, 845, 1183, 1292
BsmBI CGTCTC 1 cut(s) 206
BsmFI GGGAC 1 cut(s) 542
BsnI GGCC 2 cut(s) 454, 724
Bsp119I TTCGAA 1 cut(s) 380
Bsp1286I GDGCHC 2 cut(s) 320, 1063
Bsp143I GATC 5 cut(s) 425, 802, 902, 927, 1284
Bsp1720I GCTNAGC 1 cut(s) 40
Bsp19I CCATGG 1 cut(s) 552
BspACI CCGC 2 cut(s) 549, 743
BspANI GGCC 2 cut(s) 454, 724
BspCNI CTCAG 2 cut(s) 196, 645
BspDI ATCGAT 1 cut(s) 930
BspLI GGNNCC 1 cut(s) 558
BspPI GGATC 2 cut(s) 433, 1292
BspQI GCTCTTC 1 cut(s) 468
BspT104I TTCGAA 1 cut(s) 380
BspTI CTTAAG 1 cut(s) 577
BsrDI GCAATG 1 cut(s) 878
BsrFI RCCGGY 1 cut(s) 724
BsrI ACTGG 3 cut(s) 450, 477, 586
BssAI RCCGGY 1 cut(s) 724
BssECI CCNNGG 1 cut(s) 552
BssMI GATC 5 cut(s) 425, 802, 902, 927, 1284
BssSI CACGAG 1 cut(s) 1201
BssT1I CCWWGG 1 cut(s) 552
Bst2BI CACGAG 1 cut(s) 1201
Bst2UI CCWGG 1 cut(s) 485
Bst4CI ACNGT 8 cut(s) 88, 527, 546, 683, 705, 1058, 1280, 1382
Bst6I CTCTTC 1 cut(s) 468
BstAFI CTTAAG 1 cut(s) 577
BstBAI YACGTR 1 cut(s) 239
BstBI TTCGAA 1 cut(s) 380
BstC8I GCNNGC 1 cut(s) 1137
BstDEI CTNAG 4 cut(s) 40, 51, 204, 632
BstDSI CCRYGG 1 cut(s) 552
BstF5I GGATG 3 cut(s) 1130, 1222, 1406
BstKTI GATC 5 cut(s) 428, 805, 905, 930, 1287
BstMAI GTCTC 7 cut(s) 206, 485, 508, 748, 845, 1183, 1292
BstMBI GATC 5 cut(s) 425, 802, 902, 927, 1284
BstMWI GCNNNNNNNGC 1 cut(s) 1018
BstNI CCWGG 1 cut(s) 485
BstPAI GACNNNNGTC 1 cut(s) 500
BstSCI CCNGG 2 cut(s) 483, 1212
BstSLI GKGCMC 1 cut(s) 1063
BstV1I GCAGC 1 cut(s) 24
Bsu15I ATCGAT 1 cut(s) 930
BsuI GTATCC 1 cut(s) 1283
BsuRI GGCC 2 cut(s) 454, 724
BsuTUI ATCGAT 1 cut(s) 930
BtgI CCRYGG 1 cut(s) 552
BtgZI GCGATG 1 cut(s) 1267
BtsCI GGATG 3 cut(s) 1130, 1222, 1406
BtsIMutI CAGTG 2 cut(s) 443, 593
Cac8I GCNNGC 1 cut(s) 1137
Cfr10I RCCGGY 1 cut(s) 724
Cfr13I GGNCC 2 cut(s) 556, 896
ClaI ATCGAT 1 cut(s) 930
CseI GACGC 1 cut(s) 1380
Csp6I GTAC 1 cut(s) 1159
CviAII CATG 6 cut(s) 419, 429, 539, 553, 1193, 1208
CviQI GTAC 1 cut(s) 1159
DdeI CTNAG 4 cut(s) 40, 51, 204, 632
DpnI GATC 5 cut(s) 427, 804, 904, 929, 1286
DpnII GATC 5 cut(s) 425, 802, 902, 927, 1284
DraI TTTAAA 1 cut(s) 1342
DraIII CACNNNGTG 1 cut(s) 1058
DriI GACNNNNNGTC 1 cut(s) 681
Eam1104I CTCTTC 1 cut(s) 468
Eam1105I GACNNNNNGTC 1 cut(s) 681
EarI CTCTTC 1 cut(s) 468
EciI GGCGGA 1 cut(s) 538
Ecl136II GAGCTC 1 cut(s) 318
Eco130I CCWWGG 1 cut(s) 552
Eco24I GRGCYC 1 cut(s) 320
Eco32I GATATC 1 cut(s) 934
Eco47I GGWCC 2 cut(s) 556, 896
Eco53kI GAGCTC 1 cut(s) 318
EcoICRI GAGCTC 1 cut(s) 318
EcoRII CCWGG 1 cut(s) 483
EcoRV GATATC 1 cut(s) 934
EcoT14I CCWWGG 1 cut(s) 552
EcoT38I GRGCYC 1 cut(s) 320
ErhI CCWWGG 1 cut(s) 552
Esp3I CGTCTC 1 cut(s) 206
FaeI CATG 6 cut(s) 422, 432, 542, 556, 1196, 1211
FalI AAGNNNNNCTT 4 cut(s) 44, 76, 375, 407
FaqI GGGAC 1 cut(s) 542
FatI CATG 6 cut(s) 418, 428, 538, 552, 1192, 1207
Fnu4HI GCNGC 1 cut(s) 13
FokI GGATG 2 cut(s) 1137, 1229
FriOI GRGCYC 1 cut(s) 320
Fsp4HI GCNGC 1 cut(s) 13
FspBI CTAG 3 cut(s) 29, 1173, 1394
GluI GCNGC 1 cut(s) 13
GsuI CTGGAG 1 cut(s) 467
HaeIII GGCC 2 cut(s) 454, 724
HapII CCGG 3 cut(s) 725, 894, 1214
HgaI GACGC 1 cut(s) 1380
Hin1II CATG 6 cut(s) 422, 432, 542, 556, 1196, 1211
HindIII AAGCTT 2 cut(s) 841, 1133
HinfI GANTC 4 cut(s) 25, 242, 374, 917
HpaII CCGG 3 cut(s) 725, 894, 1214
HphI GGTGA 2 cut(s) 356, 1041
Hpy166II GTNNAC 2 cut(s) 1061, 1159
Hpy188I TCNGA 5 cut(s) 205, 373, 687, 850, 1289
Hpy188III TCNNGA 7 cut(s) 359, 640, 710, 864, 910, 1182, 1238
Hpy8I GTNNAC 2 cut(s) 1061, 1159
HpyCH4III ACNGT 8 cut(s) 88, 527, 546, 683, 705, 1058, 1280, 1382
HpyCH4IV ACGT 2 cut(s) 66, 238
HpyCH4V TGCA 4 cut(s) 443, 816, 1061, 1139
HpyF10VI GCNNNNNNNGC 1 cut(s) 1018
HpyF3I CTNAG 4 cut(s) 40, 51, 204, 632
HpySE526I ACGT 2 cut(s) 66, 238
Hsp92II CATG 6 cut(s) 422, 432, 542, 556, 1196, 1211
Kzo9I GATC 5 cut(s) 425, 802, 902, 927, 1284
LguI GCTCTTC 1 cut(s) 468
LmnI GCTCC 2 cut(s) 573, 1018
Lsp1109I GCAGC 1 cut(s) 24
LweI GCATC 1 cut(s) 803
MaeI CTAG 3 cut(s) 29, 1173, 1394
MaeII ACGT 2 cut(s) 66, 238
MaeIII GTNAC 4 cut(s) 31, 82, 247, 833
MalI GATC 5 cut(s) 427, 804, 904, 929, 1286
MboI GATC 5 cut(s) 425, 802, 902, 927, 1284
MboII GAAGA 5 cut(s) 89, 92, 369, 455, 798
MhlI GDGCHC 2 cut(s) 320, 1063
MluCI AATT 6 cut(s) 362, 649, 695, 971, 1072, 1109
MlyI GAGTC 2 cut(s) 251, 926
MnlI CCTC 6 cut(s) 55, 156, 340, 465, 481, 609
MseI TTAA 3 cut(s) 578, 939, 1341
MslI CAYNNNNRTG 1 cut(s) 1383
MspCI CTTAAG 1 cut(s) 577
MspI CCGG 3 cut(s) 725, 894, 1214
MspR9I CCNGG 2 cut(s) 485, 1214
MvaI CCWGG 1 cut(s) 485
MwoI GCNNNNNNNGC 1 cut(s) 1018
NciI CCSGG 1 cut(s) 1214
NcoI CCATGG 1 cut(s) 552
NdeII GATC 5 cut(s) 425, 802, 902, 927, 1284
NlaIII CATG 6 cut(s) 422, 432, 542, 556, 1196, 1211
NlaIV GGNNCC 1 cut(s) 558
NmuCI GTSAC 1 cut(s) 82
NspV TTCGAA 1 cut(s) 380
PciSI GCTCTTC 1 cut(s) 468
PcsI WCGNNNNNNNCGW 1 cut(s) 377
PfeI GAWTC 2 cut(s) 25, 374
PfoI TCCNGGA 1 cut(s) 483
PkrI GCNGC 1 cut(s) 14
PleI GAGTC 2 cut(s) 250, 925
PpsI GAGTC 2 cut(s) 250, 925
Ppu21I YACGTR 1 cut(s) 239
PshAI GACNNNNGTC 1 cut(s) 500
Psp124BI GAGCTC 1 cut(s) 320
Psp6I CCWGG 1 cut(s) 483
PspGI CCWGG 1 cut(s) 483
PspN4I GGNNCC 1 cut(s) 558
PspPI GGNCC 2 cut(s) 556, 896
RsaI GTAC 1 cut(s) 1160
RsaNI GTAC 1 cut(s) 1159
RseI CAYNNNNRTG 1 cut(s) 1383
SacI GAGCTC 1 cut(s) 320
SapI GCTCTTC 1 cut(s) 468
SaqAI TTAA 3 cut(s) 578, 939, 1341
SatI GCNGC 1 cut(s) 13
Sau3AI GATC 5 cut(s) 425, 802, 902, 927, 1284
Sau96I GGNCC 2 cut(s) 556, 896
SchI GAGTC 2 cut(s) 251, 926
ScrFI CCNGG 2 cut(s) 485, 1214
SduI GDGCHC 2 cut(s) 320, 1063
SfaNI GCATC 1 cut(s) 803
SfuI TTCGAA 1 cut(s) 380
SinI GGWCC 2 cut(s) 556, 896
SmiMI CAYNNNNRTG 1 cut(s) 1383
SmlI CTYRAG 2 cut(s) 456, 577
SmoI CTYRAG 2 cut(s) 456, 577
Sse9I AATT 6 cut(s) 362, 649, 695, 971, 1072, 1109
SsiI CCGC 2 cut(s) 549, 743
SspMI CTAG 3 cut(s) 29, 1173, 1394
SstI GAGCTC 1 cut(s) 320
StyD4I CCNGG 2 cut(s) 483, 1212
StyI CCWWGG 1 cut(s) 552
TaaI ACNGT 8 cut(s) 88, 527, 546, 683, 705, 1058, 1280, 1382
TaiI ACGT 2 cut(s) 69, 241
TaqI TCGA 2 cut(s) 380, 930
TaqII GACCGA 1 cut(s) 1049
TasI AATT 6 cut(s) 362, 649, 695, 971, 1072, 1109
TfiI GAWTC 2 cut(s) 25, 374
Tru1I TTAA 3 cut(s) 578, 939, 1341
Tru9I TTAA 3 cut(s) 578, 939, 1341
TscAI CASTG 2 cut(s) 450, 593
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 1 cut(s) 12
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 2 cut(s) 777, 1209
TspGWI ACGGA 1 cut(s) 1255
TspRI CASTG 2 cut(s) 450, 593
Vha464I CTTAAG 1 cut(s) 577
VneI GTGCAC 1 cut(s) 1059
VpaK11BI GGWCC 2 cut(s) 556, 896
XapI RAATTY 3 cut(s) 362, 695, 1109
XcmI CCANNNNNNNNNTGG 1 cut(s) 567
XspI CTAG 3 cut(s) 29, 1173, 1394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.