Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8254707.1

Orthogroup ID

OG0004099

Physical Location & Seq

Genomic Coordinates Forward (+)

408 .. 785

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8254707.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

atgaccgatattttgatgtcaccacacggcgcgcagttaaccaacatgttcttaatggatagaaacagtagtgtgatggagttcttcccaaaagggtggctaaaactagccggtgtaggacaattcgtctatcactggattgccagttggtcgggtatgagacaccatggtgcatggcgagacccgaacggagaactttgccagtacagtgaagacgatcgccgatgcatgtccctctacaagaatggcaaaattggatacaatgaaacatatttttctgagtggagtagaaatatactcaatgaagttaagaaaaggaagatggaagaagtagcaaatggtgctcttctaagttctactggctgtatctgtggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF563

Protein Analysis

125

Amino Acids

14.37

Weight (kDa)

7.7

Isoelectric Point (pI)

38.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33590 AT4G33600
fragaria_vesca	FvH4_2g11820 FvH4_5g35970
malus_domestica	MD05G1047000.v1.1 MD08G1191500.v1.1 MD15G1380300.v1.1
prunus_persica	Prupe.1G526500_v2.0.a1 Prupe.8G066800_v2.0.a1
pyrus_communis	pycom15g34060
rosa_chinensis	RchiOBHm_Chr4g0390351 RchiOBHm_Chr7g0237711
rosa_laevigata	RLG00000000975 RLG00000009924
rosa_multiflora	Rmu_co8254707.1_g000001 Rmu_co8428079.1_g000001 Rmu_sc0029360.1_g000001 Rmu_sc0029361.1_g000001 Rmu_ssc0000067.1_g000045
rosa_roxburghii	Rroxscaffold_3G00223850 Rroxscaffold_5G00336450
rosa_rugosa	Rorug03G0330300 Rorug07G0306500
rosa_samantha	Rh4AG031800 Rh4BG026000 Rh4CG035000 Rh4DG027600 Rh7AG463300 Rh7BG433300 Rh7CG480200 Rh7DG449200
rosa_wichuraiana	Rw4G002530 Rw7G038330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	32
AfaI	GTAC	1 cut(s)	206
AflIII	ACRYGT	1 cut(s)	45
AhdI	GACNNNNNGTC	1 cut(s)	125
AleI	CACNNNNGTG	1 cut(s)	168
Alw21I	GWGCWC	1 cut(s)	346
Alw26I	GTCTC	2 cut(s)	154, 174
ArsI	GACNNNNNNTTYG	1 cut(s)	27
AspLEI	GCGC	2 cut(s)	32, 34
AsuHPI	GGTGA	1 cut(s)	12
BbsI	GAAGAC	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	346
BccI	CCATC	2 cut(s)	70, 316
BceAI	ACGGC	1 cut(s)	43
BciVI	GTATCC	1 cut(s)	251
BcoDI	GTCTC	2 cut(s)	154, 174
BfaI	CTAG	1 cut(s)	107
BfuI	GTATCC	1 cut(s)	251
BmeRI	GACNNNNNGTC	1 cut(s)	125
BmsI	GCATC	1 cut(s)	215
BpiI	GAAGAC	1 cut(s)	219
BsaI	GGTCTC	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	166
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	4 cut(s)	140, 144, 202, 364
BseDI	CCNNGG	1 cut(s)	166
BseMII	CTCAG	1 cut(s)	270
BseNI	ACTGG	4 cut(s)	140, 144, 202, 364
BsePI	GCGCGC	1 cut(s)	30
Bsh1236I	CGCG	1 cut(s)	32
Bsh1285I	CGRYCG	1 cut(s)	220
BsiEI	CGRYCG	1 cut(s)	220
BsiHKAI	GWGCWC	1 cut(s)	346
BsiSI	CCGG	1 cut(s)	111
BslFI	GGGAC	1 cut(s)	217
BsmAI	GTCTC	2 cut(s)	154, 174
BsmFI	GGGAC	1 cut(s)	217
Bso31I	GGTCTC	1 cut(s)	174
Bsp1286I	GDGCHC	1 cut(s)	346
Bsp143I	GATC	1 cut(s)	217
Bsp19I	CCATGG	1 cut(s)	166
BspCNI	CTCAG	1 cut(s)	271
BspFNI	CGCG	1 cut(s)	32
BspQI	GCTCTTC	1 cut(s)	351
BspTNI	GGTCTC	1 cut(s)	174
BsrFI	RCCGGY	1 cut(s)	110
BsrI	ACTGG	4 cut(s)	140, 144, 202, 364
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	1 cut(s)	166
BssHII	GCGCGC	1 cut(s)	30
BssMI	GATC	1 cut(s)	217
BssT1I	CCWWGG	1 cut(s)	166
Bst4CI	ACNGT	2 cut(s)	68, 209
Bst6I	CTCTTC	1 cut(s)	351
BstAPI	GCANNNNNTGC	1 cut(s)	341
BstC8I	GCNNGC	1 cut(s)	32
BstDEI	CTNAG	2 cut(s)	279, 350
BstDSI	CCRYGG	1 cut(s)	166
BstFNI	CGCG	1 cut(s)	32
BstHHI	GCGC	2 cut(s)	32, 34
BstKTI	GATC	1 cut(s)	220
BstMAI	GTCTC	2 cut(s)	154, 174
BstMBI	GATC	1 cut(s)	217
BstMCI	CGRYCG	1 cut(s)	220
BstMWI	GCNNNNNNNGC	1 cut(s)	341
BstNSI	RCATGY	2 cut(s)	49, 232
BstUI	CGCG	1 cut(s)	32
BstV2I	GAAGAC	1 cut(s)	219
BstXI	CCANNNNNNTGG	1 cut(s)	96
BsuI	GTATCC	1 cut(s)	251
BtgI	CCRYGG	1 cut(s)	166
BtsIMutI	CAGTG	2 cut(s)	133, 214
Cac8I	GCNNGC	1 cut(s)	32
CfoI	GCGC	2 cut(s)	32, 34
Cfr10I	RCCGGY	1 cut(s)	110
Csp6I	GTAC	1 cut(s)	205
CviAII	CATG	4 cut(s)	46, 167, 174, 229
CviJI	RGCY	3 cut(s)	100, 110, 363
CviKI_1	RGCY	3 cut(s)	100, 110, 363
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	2 cut(s)	279, 350
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
DriI	GACNNNNNGTC	1 cut(s)	125
Eam1104I	CTCTTC	1 cut(s)	351
Eam1105I	GACNNNNNGTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	351
Eco130I	CCWWGG	1 cut(s)	166
Eco31I	GGTCTC	1 cut(s)	174
EcoT14I	CCWWGG	1 cut(s)	166
EcoT22I	ATGCAT	1 cut(s)	230
ErhI	CCWWGG	1 cut(s)	166
FaeI	CATG	4 cut(s)	49, 170, 177, 232
FaiI	YATR	7 cut(s)	47, 158, 168, 175, 230, 271, 296
FaqI	GGGAC	1 cut(s)	217
FatI	CATG	4 cut(s)	45, 166, 173, 228
FspBI	CTAG	1 cut(s)	107
GlaI	GCGC	2 cut(s)	31, 33
HapII	CCGG	1 cut(s)	111
HhaI	GCGC	2 cut(s)	32, 34
Hin1II	CATG	4 cut(s)	49, 170, 177, 232
Hin6I	GCGC	2 cut(s)	30, 32
HinP1I	GCGC	2 cut(s)	30, 32
HincII	GTYRAC	1 cut(s)	39
HindII	GTYRAC	1 cut(s)	39
HpaI	GTTAAC	1 cut(s)	39
HpaII	CCGG	1 cut(s)	111
HphI	GGTGA	1 cut(s)	12
Hpy166II	GTNNAC	1 cut(s)	39
Hpy188I	TCNGA	1 cut(s)	280
Hpy8I	GTNNAC	1 cut(s)	39
HpyCH4III	ACNGT	2 cut(s)	68, 209
HpyCH4V	TGCA	2 cut(s)	173, 228
HpyF10VI	GCNNNNNNNGC	1 cut(s)	341
HpyF3I	CTNAG	2 cut(s)	279, 350
Hsp92II	CATG	4 cut(s)	49, 170, 177, 232
HspAI	GCGC	2 cut(s)	30, 32
KspAI	GTTAAC	1 cut(s)	39
Kzo9I	GATC	1 cut(s)	217
LguI	GCTCTTC	1 cut(s)	351
LpnPI	CCDG	5 cut(s)	121, 124, 157, 215, 345
LweI	GCATC	1 cut(s)	215
MaeI	CTAG	1 cut(s)	107
MaeIII	GTNAC	1 cut(s)	18
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MboII	GAAGA	5 cut(s)	76, 224, 331, 338, 338
MhlI	GDGCHC	1 cut(s)	346
MluCI	AATT	2 cut(s)	122, 252
MnlI	CCTC	1 cut(s)	245
Mph1103I	ATGCAT	1 cut(s)	230
MseI	TTAA	4 cut(s)	38, 53, 309, 376
MslI	CAYNNNNRTG	1 cut(s)	168
MspI	CCGG	1 cut(s)	111
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	1 cut(s)	341
NcoI	CCATGG	1 cut(s)	166
NdeII	GATC	1 cut(s)	217
NlaIII	CATG	4 cut(s)	49, 170, 177, 232
NmuCI	GTSAC	1 cut(s)	18
NsiI	ATGCAT	1 cut(s)	230
NspI	RCATGY	2 cut(s)	49, 232
OliI	CACNNNNGTG	1 cut(s)	168
PauI	GCGCGC	1 cut(s)	30
PciI	ACATGT	1 cut(s)	45
PciSI	GCTCTTC	1 cut(s)	351
Ple19I	CGATCG	1 cut(s)	220
PscI	ACATGT	1 cut(s)	45
PteI	GCGCGC	1 cut(s)	30
PvuI	CGATCG	1 cut(s)	220
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
RseI	CAYNNNNRTG	1 cut(s)	168
SapI	GCTCTTC	1 cut(s)	351
SaqAI	TTAA	4 cut(s)	38, 53, 309, 376
Sau3AI	GATC	1 cut(s)	217
SduI	GDGCHC	1 cut(s)	346
SfaNI	GCATC	1 cut(s)	215
SmiMI	CAYNNNNRTG	1 cut(s)	168
Sse9I	AATT	2 cut(s)	122, 252
SspMI	CTAG	1 cut(s)	107
StyI	CCWWGG	1 cut(s)	166
TaaI	ACNGT	2 cut(s)	68, 209
TaqII	GACCGA	1 cut(s)	20
TasI	AATT	2 cut(s)	122, 252
TatI	WGTACW	1 cut(s)	204
Tru1I	TTAA	4 cut(s)	38, 53, 309, 376
Tru9I	TTAA	4 cut(s)	38, 53, 309, 376
TscAI	CASTG	2 cut(s)	140, 214
TseFI	GTSAC	1 cut(s)	18
Tsp45I	GTSAC	1 cut(s)	18
TspDTI	ATGAA	2 cut(s)	279, 318
TspGWI	ACGGA	1 cut(s)	204
TspRI	CASTG	2 cut(s)	140, 214
XceI	RCATGY	2 cut(s)	49, 232
XspI	CTAG	1 cut(s)	107
Zsp2I	ATGCAT	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.