RLG00000000975

Protein of unknown function (DUF563)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0004099
Physical Location & Seq
Forward (+)
8738274 .. 8740318
2045 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000975

Sequence Viewer

Length: 1407 bp
ATGGAAGTGAAAAGCAGTGCCAGACCACTCAACAAACCGAAGAGCTTGAGCCCCTCAATAACCCTACTCCTCACAGGCCTCTTTTCGCTATCTCTCTTTCTCATCCTATTTCATGGCTTTTCTTCACTCTCCATCTCTTCCGCTTCATGGGATTTCCAGAAATGGAGAGGTGAACTTGGTGCCAACAACAATGATGCTCGTGATGATCTTAACTCGAAGCTCCGAGACTCGGTTACTTTCCTTCCTCTCAAAGACTTGAGGTTCACTAAAACTGCAATGGAGGGCAACACTTGGTTTATGAGCTCTTTCAACGACACATACGACGAAAATGAATCCCAATACCTCTATTTCCCTTCACAAGCGTCAAAGGGAAGACTACTATGCATCAAAGGCCATGACCAAAAAGATGGCACCAAGAACTCATATGCCTTGGCATGGCCTCAAAGTCTACCAAACTCCACCAGAGTCTTGAAAGGCCTCACCTTTGTGTCCGACACATACTATGATTATGTAAACTTGTGGCATGGACTCTCTGCAATGGTCCCTTTTGTGGGTTGGTCCATGAAGAACAGGTGTTTGAAGCCAACGAGATGGGTGTTGTTCCACTGGGGAGAGCTGAGAGACAAAATGGGGTTGTGGCTTCAGAACCTAATGGAAGCAAACTTAGGGAAAGTGCTGATTGAAGAAATGGGAAAAGGAGAAGGGCCTTATTGTTTTGAGAAGGCTGTTGTGATGAGACATAATGTTGGGAAAATGGGGAAAGAGAAGAAGCGTCAAGTGTCTGACTTATTGAGATGCAAAGCAAGAGTGTTTTGTGGCATAAATCCTTCAGGTAGAGGGGAAGAGGTTGGTGTGAGTGGGGAGCCAATTATAAGGCTAACTTTGCTAATGAGGAGAGGTTCAAGATCATTCAAGGATCCAACGGCTGTGATTAGTATATTTGCAAGGGAGTGTGCATTGGTGGATGGGTGCTTGTTAGAGGTTGTTCAGTCTGAAGACCAAAGTTTCTGTGATCAGGTTAGGGTAATGACCAACACAGATATTCTTGCATCCCCGCATGGAGCTCAGCTAACAAACATGTTATTCATGGATAGAAACAGTAGCATAATGGAATTCTTCCCTAAAGGATGGTTGGAGCTTGCCGGGGTCGGCCAGTATGCTCATCACTGGATGGCAGATCAATCCGGTATGATGCACCAAGGCGCATGGTGGGATCCTAATGCTGAAGAGGAATGTCCTGACCCTAAACAACAACTAGAATGCTTTAACTTCTACAAAGATGGCAAGGTCGGTCACAACAAAACCTACTTTGCAGGGTGGGCTAGAACTGTTCTCAACCAAGTTCGGATAAGTAAGCAGCAAGCCATGCAGAGTTCACAGAGATATTCAAATGCTTGCCAATGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF563

Protein Analysis

469

Amino Acids

53.15

Weight (kDa)

8.7

Isoelectric Point (pI)

44.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_61 PF04577 291 - 369 3.3e-12 Glycosyltransferase 61
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 872
AccB1I GGYRCC 2 cut(s) 179, 410
AccI GTMKAC 1 cut(s) 448
AciI CCGC 2 cut(s) 141, 1055
AclWI GGATC 4 cut(s) 911, 924, 1208, 1221
AcoI YGGCCR 1 cut(s) 1150
AcsI RAATTY 1 cut(s) 1112
AcuI CTGAAG 4 cut(s) 626, 813, 1014, 1245
AfiI CCNNNNNNNGG 5 cut(s) 147, 229, 435, 550, 551
AflIII ACRYGT 1 cut(s) 1077
AgsI TTSAA 7 cut(s) 310, 472, 580, 683, 903, 913, 1389
AleI CACNNNNGTG 1 cut(s) 485
AluBI AGCT 7 cut(s) 45, 220, 303, 616, 1064, 1069, 1138
AluI AGCT 7 cut(s) 45, 220, 303, 616, 1064, 1069, 1138
Alw21I GWGCWC 2 cut(s) 305, 1066
Alw26I GTCTC 3 cut(s) 219, 615, 730
AlwI GGATC 4 cut(s) 911, 924, 1208, 1221
AoxI GGCC 6 cut(s) 76, 391, 437, 475, 704, 1150
ApeKI GCWGC 1 cut(s) 1357
ApoI RAATTY 1 cut(s) 1112
AspLEI GCGC 1 cut(s) 1205
AspS9I GGNCC 3 cut(s) 541, 558, 704
AsuC2I CCSGG 1 cut(s) 1144
AsuHPI GGTGA 2 cut(s) 182, 472
AvaII GGWCC 2 cut(s) 541, 558
BamHI GGATCC 2 cut(s) 916, 1213
BanI GGYRCC 2 cut(s) 179, 410
BanII GRGCYC 3 cut(s) 53, 305, 1066
BauI CACGAG 1 cut(s) 198
BbsI GAAGAC 2 cut(s) 379, 1002
Bbv12I GWGCWC 2 cut(s) 305, 1066
BbvI GCAGC 1 cut(s) 1369
BccI CCATC 7 cut(s) 140, 401, 585, 959, 1122, 1165, 1274
BceAI ACGGC 1 cut(s) 939
BclI TGATCA 1 cut(s) 1012
BcnI CCSGG 1 cut(s) 1144
BcoDI GTCTC 3 cut(s) 219, 615, 730
BfaI CTAG 3 cut(s) 1256, 1323, 1405
BisI GCNGC 1 cut(s) 1358
BlpI GCTNAGC 1 cut(s) 1065
BlsI GCNGC 1 cut(s) 1359
Bme1390I CCNGG 1 cut(s) 1144
Bme18I GGWCC 2 cut(s) 541, 558
BmgT120I GGNCC 3 cut(s) 541, 558, 704
BmiI GGNNCC 6 cut(s) 181, 412, 543, 864, 918, 1215
BmrFI CCNGG 1 cut(s) 1144
BmrI ACTGGG 1 cut(s) 616
BmsI GCATC 5 cut(s) 184, 393, 785, 1058, 1182
BmuI ACTGGG 1 cut(s) 616
BpiI GAAGAC 2 cut(s) 379, 1002
Bpu1102I GCTNAGC 1 cut(s) 1065
BpuEI CTTGAG 2 cut(s) 67, 277
BpuMI CCSGG 1 cut(s) 1144
BsaJI CCNNGG 3 cut(s) 429, 1143, 1198
BsaWI WCCGGW 1 cut(s) 1184
Bsc4I CCNNNNNNNGG 5 cut(s) 147, 229, 435, 550, 551
Bse1I ACTGG 3 cut(s) 611, 1153, 1172
Bse3DI GCAATG 2 cut(s) 282, 543
BseDI CCNNGG 3 cut(s) 429, 1143, 1198
BseGI GGATG 5 cut(s) 102, 970, 1049, 1133, 1176
BseLI CCNNNNNNNGG 5 cut(s) 147, 229, 435, 550, 551
BseMI GCAATG 2 cut(s) 282, 543
BseMII CTCAG 2 cut(s) 608, 1079
BseNI ACTGG 3 cut(s) 611, 1153, 1172
BseRI GAGGAG 2 cut(s) 59, 907
BseXI GCAGC 1 cut(s) 1369
BshFI GGCC 6 cut(s) 78, 393, 439, 477, 706, 1152
BshNI GGYRCC 2 cut(s) 179, 410
BsiHKAI GWGCWC 2 cut(s) 305, 1066
BsiSI CCGG 2 cut(s) 1143, 1185
BslFI GGGAC 1 cut(s) 527
BslI CCNNNNNNNGG 5 cut(s) 147, 229, 435, 550, 551
BsmAI GTCTC 3 cut(s) 219, 615, 730
BsmFI GGGAC 1 cut(s) 527
BsmI GAATGC 1 cut(s) 1265
BsnI GGCC 6 cut(s) 78, 393, 439, 477, 706, 1152
Bsp1286I GDGCHC 3 cut(s) 53, 305, 1066
Bsp143I GATC 6 cut(s) 205, 905, 916, 1012, 1177, 1213
Bsp1720I GCTNAGC 1 cut(s) 1065
BspACI CCGC 2 cut(s) 141, 1055
BspANI GGCC 6 cut(s) 78, 393, 439, 477, 706, 1152
BspCNI CTCAG 2 cut(s) 609, 1078
BspLI GGNNCC 6 cut(s) 181, 412, 543, 864, 918, 1215
BspPI GGATC 4 cut(s) 911, 924, 1208, 1221
BspQI GCTCTTC 1 cut(s) 35
BspT107I GGYRCC 2 cut(s) 179, 410
BsrDI GCAATG 2 cut(s) 282, 543
BsrI ACTGG 3 cut(s) 611, 1153, 1172
BssECI CCNNGG 3 cut(s) 429, 1143, 1198
BssMI GATC 6 cut(s) 205, 905, 916, 1012, 1177, 1213
BssSI CACGAG 1 cut(s) 198
BssT1I CCWWGG 2 cut(s) 429, 1198
Bst2BI CACGAG 1 cut(s) 198
Bst4CI ACNGT 2 cut(s) 1100, 1330
Bst6I CTCTTC 4 cut(s) 35, 142, 837, 1221
BstAPI GCANNNNNTGC 1 cut(s) 1366
BstC8I GCNNGC 3 cut(s) 1140, 1362, 1396
BstDEI CTNAG 3 cut(s) 617, 664, 1065
BstF5I GGATG 5 cut(s) 102, 970, 1049, 1133, 1176
BstHHI GCGC 1 cut(s) 1205
BstKTI GATC 6 cut(s) 208, 908, 919, 1015, 1180, 1216
BstMAI GTCTC 3 cut(s) 219, 615, 730
BstMBI GATC 6 cut(s) 205, 905, 916, 1012, 1177, 1213
BstMWI GCNNNNNNNGC 4 cut(s) 390, 883, 1319, 1366
BstNSI RCATGY 1 cut(s) 1081
BstSCI CCNGG 1 cut(s) 1142
BstV1I GCAGC 1 cut(s) 1369
BstV2I GAAGAC 2 cut(s) 379, 1002
BstX2I RGATCY 2 cut(s) 916, 1213
BstXI CCANNNNNNTGG 2 cut(s) 407, 591
BstYI RGATCY 2 cut(s) 916, 1213
BsuRI GGCC 6 cut(s) 78, 393, 439, 477, 706, 1152
BtsCI GGATG 5 cut(s) 102, 970, 1049, 1133, 1176
BtsI GCAGTG 1 cut(s) 22
BtsIMutI CAGTG 3 cut(s) 22, 604, 1165
Cac8I GCNNGC 3 cut(s) 1140, 1362, 1396
CfoI GCGC 1 cut(s) 1205
Cfr13I GGNCC 3 cut(s) 541, 558, 704
CseI GACGC 2 cut(s) 351, 761
DdeI CTNAG 3 cut(s) 617, 664, 1065
DpnI GATC 6 cut(s) 207, 907, 918, 1014, 1179, 1215
DpnII GATC 6 cut(s) 205, 905, 916, 1012, 1177, 1213
EaeI YGGCCR 1 cut(s) 1150
Eam1104I CTCTTC 4 cut(s) 35, 142, 837, 1221
EarI CTCTTC 4 cut(s) 35, 142, 837, 1221
Ecl136II GAGCTC 2 cut(s) 303, 1064
Eco130I CCWWGG 2 cut(s) 429, 1198
Eco147I AGGCCT 2 cut(s) 78, 477
Eco24I GRGCYC 3 cut(s) 53, 305, 1066
Eco47I GGWCC 2 cut(s) 541, 558
Eco53kI GAGCTC 2 cut(s) 303, 1064
Eco57I CTGAAG 4 cut(s) 626, 813, 1014, 1245
EcoICRI GAGCTC 2 cut(s) 303, 1064
EcoO109I RGGNCCY 1 cut(s) 704
EcoRI GAATTC 1 cut(s) 1112
EcoT14I CCWWGG 2 cut(s) 429, 1198
EcoT22I ATGCAT 1 cut(s) 386
EcoT38I GRGCYC 3 cut(s) 53, 305, 1066
ErhI CCWWGG 2 cut(s) 429, 1198
FalI AAGNNNNNCTT 2 cut(s) 865, 897
FaqI GGGAC 1 cut(s) 527
FauI CCCGC 1 cut(s) 1062
FauNDI CATATG 1 cut(s) 424
FbaI TGATCA 1 cut(s) 1012
FblI GTMKAC 1 cut(s) 448
Fnu4HI GCNGC 1 cut(s) 1358
FokI GGATG 5 cut(s) 89, 977, 1036, 1140, 1183
FriOI GRGCYC 3 cut(s) 53, 305, 1066
Fsp4HI GCNGC 1 cut(s) 1358
FspBI CTAG 3 cut(s) 1256, 1323, 1405
GlaI GCGC 1 cut(s) 1204
GluI GCNGC 1 cut(s) 1358
HaeIII GGCC 6 cut(s) 78, 393, 439, 477, 706, 1152
HapII CCGG 2 cut(s) 1143, 1185
HgaI GACGC 2 cut(s) 351, 761
HhaI GCGC 1 cut(s) 1205
Hin6I GCGC 1 cut(s) 1203
HinP1I GCGC 1 cut(s) 1203
HinfI GANTC 4 cut(s) 227, 332, 465, 528
HpaII CCGG 2 cut(s) 1143, 1185
HphI GGTGA 2 cut(s) 182, 472
Hpy166II GTNNAC 5 cut(s) 173, 264, 449, 514, 1376
Hpy188I TCNGA 6 cut(s) 224, 493, 645, 784, 994, 1347
Hpy188III TCNNGA 5 cut(s) 157, 200, 469, 903, 1238
Hpy8I GTNNAC 5 cut(s) 173, 264, 449, 514, 1376
Hpy99I CGWCG 1 cut(s) 326
HpyAV CCTTC 5 cut(s) 251, 363, 695, 715, 837
HpyCH4III ACNGT 2 cut(s) 1100, 1330
HpyF10VI GCNNNNNNNGC 4 cut(s) 390, 883, 1319, 1366
HpyF3I CTNAG 3 cut(s) 617, 664, 1065
HspAI GCGC 1 cut(s) 1203
Ksp22I TGATCA 1 cut(s) 1012
Kzo9I GATC 6 cut(s) 205, 905, 916, 1012, 1177, 1213
LguI GCTCTTC 1 cut(s) 35
LmnI GCTCC 4 cut(s) 225, 862, 1061, 1135
Lsp1109I GCAGC 1 cut(s) 1369
LweI GCATC 5 cut(s) 184, 393, 785, 1058, 1182
MaeI CTAG 3 cut(s) 1256, 1323, 1405
MaeIII GTNAC 2 cut(s) 232, 1292
MalI GATC 6 cut(s) 207, 907, 918, 1014, 1179, 1215
MboI GATC 6 cut(s) 205, 905, 916, 1012, 1177, 1213
MflI RGATCY 2 cut(s) 916, 1213
MhlI GDGCHC 3 cut(s) 53, 305, 1066
MluCI AATT 2 cut(s) 867, 1112
MlyI GAGTC 3 cut(s) 221, 474, 522
MmeI TCCRAC 3 cut(s) 516, 944, 1113
Mph1103I ATGCAT 1 cut(s) 386
MseI TTAA 2 cut(s) 210, 1266
MslI CAYNNNNRTG 1 cut(s) 485
MspI CCGG 2 cut(s) 1143, 1185
MspR9I CCNGG 1 cut(s) 1144
Mva1269I GAATGC 1 cut(s) 1265
MwoI GCNNNNNNNGC 4 cut(s) 390, 883, 1319, 1366
NciI CCSGG 1 cut(s) 1144
NdeI CATATG 1 cut(s) 424
NdeII GATC 6 cut(s) 205, 905, 916, 1012, 1177, 1213
NlaIV GGNNCC 6 cut(s) 181, 412, 543, 864, 918, 1215
NmuCI GTSAC 1 cut(s) 1292
NsiI ATGCAT 1 cut(s) 386
NspI RCATGY 1 cut(s) 1081
OliI CACNNNNGTG 1 cut(s) 485
PceI AGGCCT 2 cut(s) 78, 477
PciI ACATGT 1 cut(s) 1077
PciSI GCTCTTC 1 cut(s) 35
PcsI WCGNNNNNNNCGW 1 cut(s) 318
PctI GAATGC 1 cut(s) 1265
PfeI GAWTC 1 cut(s) 332
PkrI GCNGC 1 cut(s) 1359
PleI GAGTC 3 cut(s) 221, 473, 522
PpsI GAGTC 3 cut(s) 221, 473, 522
PscI ACATGT 1 cut(s) 1077
PsiI TTATAA 1 cut(s) 872
Psp124BI GAGCTC 2 cut(s) 305, 1066
PspN4I GGNNCC 6 cut(s) 181, 412, 543, 864, 918, 1215
PspPI GGNCC 3 cut(s) 541, 558, 704
PsuI RGATCY 2 cut(s) 916, 1213
RseI CAYNNNNRTG 1 cut(s) 485
SacI GAGCTC 2 cut(s) 305, 1066
SapI GCTCTTC 1 cut(s) 35
SaqAI TTAA 2 cut(s) 210, 1266
SatI GCNGC 1 cut(s) 1358
Sau3AI GATC 6 cut(s) 205, 905, 916, 1012, 1177, 1213
Sau96I GGNCC 3 cut(s) 541, 558, 704
SchI GAGTC 3 cut(s) 221, 474, 522
ScrFI CCNGG 1 cut(s) 1144
SduI GDGCHC 3 cut(s) 53, 305, 1066
SfaNI GCATC 5 cut(s) 184, 393, 785, 1058, 1182
SinI GGWCC 2 cut(s) 541, 558
SmiMI CAYNNNNRTG 1 cut(s) 485
SmlI CTYRAG 2 cut(s) 46, 256
SmoI CTYRAG 2 cut(s) 46, 256
Sse9I AATT 2 cut(s) 867, 1112
SseBI AGGCCT 2 cut(s) 78, 477
SsiI CCGC 2 cut(s) 141, 1055
SspMI CTAG 3 cut(s) 1256, 1323, 1405
SstI GAGCTC 2 cut(s) 305, 1066
StuI AGGCCT 2 cut(s) 78, 477
StyD4I CCNGG 1 cut(s) 1142
StyI CCWWGG 2 cut(s) 429, 1198
TaaI ACNGT 2 cut(s) 1100, 1330
TaqI TCGA 1 cut(s) 215
TaqII GACCGA 1 cut(s) 1280
TasI AATT 2 cut(s) 867, 1112
TfiI GAWTC 1 cut(s) 332
Tru1I TTAA 2 cut(s) 210, 1266
Tru9I TTAA 2 cut(s) 210, 1266
TscAI CASTG 3 cut(s) 22, 611, 1172
TseFI GTSAC 1 cut(s) 1292
TseI GCWGC 1 cut(s) 1357
Tsp45I GTSAC 1 cut(s) 1292
TspDTI ATGAA 5 cut(s) 101, 135, 345, 578, 1075
TspRI CASTG 3 cut(s) 22, 611, 1172
VpaK11BI GGWCC 2 cut(s) 541, 558
XapI RAATTY 1 cut(s) 1112
XceI RCATGY 1 cut(s) 1081
XmiI GTMKAC 1 cut(s) 448
XspI CTAG 3 cut(s) 1256, 1323, 1405
Zsp2I ATGCAT 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.