Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8428079.1

Orthogroup ID

OG0004099

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 944

Gene Structure 943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8428079.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 943 bp

atggtgaaagcacctccagaattagtagaaagatcctctatggccatggacagcagcagagtagctcatcaccacaatctcaaacatcattcccaacgccctaattctatttcgtctttcttctccccaaagctctccatctacatcctcgcttcctgcgtcgccctcttcgtcatcttccacatccagtcccttcaaactccacctgaatccacatcgttgctgccttcatggtctctcaatctcatgcgccagtggcagagagtcatcaacaccactaccactgccggcaccgccacagcggaagaaactacatccacgtccttcaccaacaactacaccagcgagctcaacgcactaagagacaaactccggcagtcagtcacgtttctcccgctaaaggacttacgttacgcccatgcggccctcgtcgggcacacgtggttcatgagctccatgtacgactcaagtgacgaagaaggcgaggtccagtaccagcacttcccttcacagttgtcgagcaacagactcctctgcctcaaaggccgcgacaaccatgacggctcctggaactcatatgcccttgcgtggccagacgtgcttccccacaacgcaaccctaatgaccggtctgtccttcatttcctacaaccactacagctacgacaacatatggcacggcctggccgccgtcatgccctttgtagcgtggcacaagaagaactcatgcgccaaacctgatcggtggattttgtaccactggggggagattaggtccaggatggcagtgtggcttagtactcttatggaggctacttttggaggtccgccgttcgtggaagtgtttaacggggttgaggaagggagggcggtttgtttcgaggaggcggtggtgatgaggcacaacgaaggtgggatgtctagggatcagagaatggaggttt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF563

Protein Analysis

314

Amino Acids

35.73

Weight (kDa)

6.59

Isoelectric Point (pI)

61.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33590 AT4G33600
fragaria_vesca	FvH4_2g11820 FvH4_5g35970
malus_domestica	MD05G1047000.v1.1 MD08G1191500.v1.1 MD15G1380300.v1.1
prunus_persica	Prupe.1G526500_v2.0.a1 Prupe.8G066800_v2.0.a1
pyrus_communis	pycom15g34060
rosa_chinensis	RchiOBHm_Chr4g0390351 RchiOBHm_Chr7g0237711
rosa_laevigata	RLG00000000975 RLG00000009924
rosa_multiflora	Rmu_co8254707.1_g000001 Rmu_co8428079.1_g000001 Rmu_sc0029360.1_g000001 Rmu_sc0029361.1_g000001 Rmu_ssc0000067.1_g000045
rosa_roxburghii	Rroxscaffold_3G00223850 Rroxscaffold_5G00336450
rosa_rugosa	Rorug03G0330300 Rorug07G0306500
rosa_samantha	Rh4AG031800 Rh4BG026000 Rh4CG035000 Rh4DG027600 Rh7AG463300 Rh7BG433300 Rh7CG480200 Rh7DG449200
rosa_wichuraiana	Rw4G002530 Rw7G038330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	631
AccB1I	GGYRCC	1 cut(s)	290
AccII	CGCG	1 cut(s)	549
AciI	CCGC	9 cut(s)	294, 302, 395, 422, 547, 687, 827, 869, 887
AclWI	GGATC	2 cut(s)	27, 933
AcoI	YGGCCR	3 cut(s)	42, 590, 684
AcvI	CACGTG	1 cut(s)	441
AfaI	GTAC	4 cut(s)	461, 494, 755, 799
AfiI	CCNNNNNNNGG	4 cut(s)	400, 432, 588, 763
AflIII	ACRYGT	1 cut(s)	438
AgeI	ACCGGT	1 cut(s)	626
AgsI	TTSAA	1 cut(s)	197
AjiI	CACGTC	2 cut(s)	321, 598
AjnI	CCWGG	3 cut(s)	566, 681, 776
AluBI	AGCT	5 cut(s)	65, 133, 349, 453, 660
AluI	AGCT	5 cut(s)	65, 133, 349, 453, 660
Alw21I	GWGCWC	2 cut(s)	351, 455
Alw26I	GTCTC	2 cut(s)	240, 357
AlwI	GGATC	2 cut(s)	27, 933
AoxI	GGCC	6 cut(s)	42, 423, 544, 590, 679, 684
ApeKI	GCWGC	2 cut(s)	54, 223
AsiGI	ACCGGT	1 cut(s)	626
AspLEI	GCGC	2 cut(s)	252, 731
AspS9I	GGNCC	4 cut(s)	424, 487, 774, 824
AsuHPI	GGTGA	4 cut(s)	16, 62, 319, 904
AvaII	GGWCC	3 cut(s)	487, 774, 824
BaeGI	GKGCMC	1 cut(s)	438
BalI	TGGCCA	2 cut(s)	44, 592
BanI	GGYRCC	1 cut(s)	290
BanII	GRGCYC	2 cut(s)	351, 455
BarI	GAAGNNNNNNTAC	2 cut(s)	485, 517
BbrPI	CACGTG	1 cut(s)	441
Bbv12I	GWGCWC	2 cut(s)	351, 455
BbvI	GCAGC	2 cut(s)	66, 210
BccI	CCATC	2 cut(s)	146, 775
BceAI	ACGGC	4 cut(s)	577, 674, 694, 814
BciT130I	CCWGG	3 cut(s)	568, 683, 778
BcoDI	GTCTC	2 cut(s)	240, 357
BfaI	CTAG	1 cut(s)	921
BfmI	CTRYAG	1 cut(s)	655
BglI	GCCNNNNNGGC	2 cut(s)	422, 543
BisI	GCNGC	5 cut(s)	55, 224, 423, 547, 687
BlsI	GCNGC	5 cut(s)	56, 225, 424, 548, 688
BmcAI	AGTACT	1 cut(s)	799
Bme1390I	CCNGG	3 cut(s)	568, 683, 778
Bme18I	GGWCC	3 cut(s)	487, 774, 824
BmgBI	CACGTC	2 cut(s)	321, 598
BmgT120I	GGNCC	4 cut(s)	424, 487, 774, 824
BmiI	GGNNCC	2 cut(s)	292, 565
BmrFI	CCNGG	3 cut(s)	568, 683, 778
BmrI	ACTGGG	1 cut(s)	769
BmuI	ACTGGG	1 cut(s)	769
BplI	GAGNNNNNCTC	2 cut(s)	354, 386
BpuEI	CTTGAG	1 cut(s)	451
BsaAI	YACGTR	1 cut(s)	441
BsaI	GGTCTC	1 cut(s)	240
BsaJI	CCNNGG	1 cut(s)	45
BsaWI	WCCGGW	1 cut(s)	626
BsaXI	ACNNNNNCTCC	2 cut(s)	758, 788
Bsc4I	CCNNNNNNNGG	4 cut(s)	400, 432, 588, 763
Bse118I	RCCGGY	2 cut(s)	287, 626
Bse1I	ACTGG	4 cut(s)	187, 253, 490, 764
BseBI	CCWGG	3 cut(s)	568, 683, 778
BseDI	CCNNGG	1 cut(s)	45
BseGI	GGATG	5 cut(s)	144, 183, 314, 786, 921
BseLI	CCNNNNNNNGG	4 cut(s)	400, 432, 588, 763
BseNI	ACTGG	4 cut(s)	187, 253, 490, 764
BseRI	GAGGAG	2 cut(s)	521, 896
BseSI	GKGCMC	1 cut(s)	438
BseXI	GCAGC	2 cut(s)	66, 210
Bsh1236I	CGCG	1 cut(s)	549
BshFI	GGCC	6 cut(s)	44, 425, 546, 592, 681, 686
BshNI	GGYRCC	1 cut(s)	290
BshTI	ACCGGT	1 cut(s)	626
BsiHKAI	GWGCWC	2 cut(s)	351, 455
BsiSI	CCGG	3 cut(s)	288, 373, 627
BslFI	GGGAC	1 cut(s)	175
BslI	CCNNNNNNNGG	4 cut(s)	400, 432, 588, 763
BsmAI	GTCTC	2 cut(s)	240, 357
BsmFI	GGGAC	1 cut(s)	175
BsnI	GGCC	6 cut(s)	44, 425, 546, 592, 681, 686
Bso31I	GGTCTC	1 cut(s)	240
Bsp1286I	GDGCHC	3 cut(s)	351, 438, 455
Bsp143I	GATC	3 cut(s)	32, 739, 925
Bsp19I	CCATGG	1 cut(s)	45
BspACI	CCGC	9 cut(s)	294, 302, 395, 422, 547, 687, 827, 869, 887
BspANI	GGCC	6 cut(s)	44, 425, 546, 592, 681, 686
BspFNI	CGCG	1 cut(s)	549
BspHI	TCATGA	1 cut(s)	447
BspLI	GGNNCC	2 cut(s)	292, 565
BspPI	GGATC	2 cut(s)	27, 933
BspT107I	GGYRCC	1 cut(s)	290
BspTNI	GGTCTC	1 cut(s)	240
BsrFI	RCCGGY	2 cut(s)	287, 626
BsrI	ACTGG	4 cut(s)	187, 253, 490, 764
BssAI	RCCGGY	2 cut(s)	287, 626
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	3 cut(s)	32, 739, 925
BssT1I	CCWWGG	1 cut(s)	45
Bst2UI	CCWGG	3 cut(s)	568, 683, 778
Bst4CI	ACNGT	1 cut(s)	513
Bst6I	CTCTTC	1 cut(s)	173
BstBAI	YACGTR	1 cut(s)	441
BstC8I	GCNNGC	2 cut(s)	289, 347
BstDEI	CTNAG	2 cut(s)	359, 794
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	5 cut(s)	144, 183, 314, 786, 921
BstFNI	CGCG	1 cut(s)	549
BstHHI	GCGC	2 cut(s)	252, 731
BstKTI	GATC	3 cut(s)	35, 742, 928
BstMAI	GTCTC	2 cut(s)	240, 357
BstMBI	GATC	3 cut(s)	32, 739, 925
BstMWI	GCNNNNNNNGC	5 cut(s)	256, 293, 422, 543, 598
BstNI	CCWGG	3 cut(s)	568, 683, 778
BstSCI	CCNGG	3 cut(s)	566, 681, 776
BstSFI	CTRYAG	1 cut(s)	655
BstSLI	GKGCMC	1 cut(s)	438
BstUI	CGCG	1 cut(s)	549
BstV1I	GCAGC	2 cut(s)	66, 210
BstX2I	RGATCY	1 cut(s)	32
BstYI	RGATCY	1 cut(s)	32
BsuRI	GGCC	6 cut(s)	44, 425, 546, 592, 681, 686
BtgI	CCRYGG	1 cut(s)	45
BtrI	CACGTC	2 cut(s)	321, 598
BtsCI	GGATG	5 cut(s)	144, 183, 314, 786, 921
BtsI	GCAGTG	2 cut(s)	282, 792
BtsIMutI	CAGTG	4 cut(s)	260, 282, 757, 792
Cac8I	GCNNGC	2 cut(s)	289, 347
CciI	TCATGA	1 cut(s)	447
CfoI	GCGC	2 cut(s)	252, 731
Cfr10I	RCCGGY	2 cut(s)	287, 626
Cfr13I	GGNCC	4 cut(s)	424, 487, 774, 824
CseI	GACGC	1 cut(s)	148
Csp6I	GTAC	4 cut(s)	460, 493, 754, 798
CspAI	ACCGGT	1 cut(s)	626
CspCI	CAANNNNNGTGG	2 cut(s)	892, 927
CviAII	CATG	9 cut(s)	46, 231, 247, 419, 448, 457, 557, 694, 726
CviQI	GTAC	4 cut(s)	460, 493, 754, 798
DdeI	CTNAG	2 cut(s)	359, 794
DpnI	GATC	3 cut(s)	34, 741, 927
DpnII	GATC	3 cut(s)	32, 739, 925
DrdI	GACNNNNNNGTC	1 cut(s)	631
DseDI	GACNNNNNNGTC	1 cut(s)	631
EaeI	YGGCCR	3 cut(s)	42, 590, 684
Eam1104I	CTCTTC	1 cut(s)	173
EarI	CTCTTC	1 cut(s)	173
EciI	GGCGGA	1 cut(s)	816
Ecl136II	GAGCTC	2 cut(s)	349, 453
Eco130I	CCWWGG	1 cut(s)	45
Eco24I	GRGCYC	2 cut(s)	351, 455
Eco31I	GGTCTC	1 cut(s)	240
Eco47I	GGWCC	3 cut(s)	487, 774, 824
Eco53kI	GAGCTC	2 cut(s)	349, 453
Eco72I	CACGTG	1 cut(s)	441
EcoICRI	GAGCTC	2 cut(s)	349, 453
EcoRII	CCWGG	3 cut(s)	566, 681, 776
EcoT14I	CCWWGG	1 cut(s)	45
EcoT38I	GRGCYC	2 cut(s)	351, 455
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	9 cut(s)	49, 234, 250, 422, 451, 460, 560, 697, 729
FaqI	GGGAC	1 cut(s)	175
FatI	CATG	9 cut(s)	45, 230, 246, 418, 447, 456, 556, 693, 725
FauI	CCCGC	1 cut(s)	402
FauNDI	CATATG	2 cut(s)	577, 671
Fnu4HI	GCNGC	5 cut(s)	55, 224, 423, 547, 687
FokI	GGATG	5 cut(s)	131, 170, 301, 793, 928
FriOI	GRGCYC	2 cut(s)	351, 455
Fsp4HI	GCNGC	5 cut(s)	55, 224, 423, 547, 687
FspBI	CTAG	1 cut(s)	921
GlaI	GCGC	2 cut(s)	251, 730
GluI	GCNGC	5 cut(s)	55, 224, 423, 547, 687
HaeIII	GGCC	6 cut(s)	44, 425, 546, 592, 681, 686
HapII	CCGG	3 cut(s)	288, 373, 627
HgaI	GACGC	1 cut(s)	148
HhaI	GCGC	2 cut(s)	252, 731
Hin1II	CATG	9 cut(s)	49, 234, 250, 422, 451, 460, 560, 697, 729
Hin6I	GCGC	2 cut(s)	250, 729
HinP1I	GCGC	2 cut(s)	250, 729
HinfI	GANTC	4 cut(s)	209, 264, 464, 528
HpaII	CCGG	3 cut(s)	288, 373, 627
HphI	GGTGA	4 cut(s)	16, 62, 319, 904
Hpy188I	TCNGA	1 cut(s)	930
Hpy188III	TCNNGA	2 cut(s)	17, 448
Hpy99I	CGWCG	2 cut(s)	164, 434
HpyAV	CCTTC	8 cut(s)	203, 237, 334, 473, 516, 646, 854, 902
HpyCH4III	ACNGT	1 cut(s)	513
HpyCH4IV	ACGT	5 cut(s)	320, 386, 409, 440, 597
HpyF10VI	GCNNNNNNNGC	5 cut(s)	256, 293, 422, 543, 598
HpyF3I	CTNAG	2 cut(s)	359, 794
HpySE526I	ACGT	5 cut(s)	320, 386, 409, 440, 597
Hsp92II	CATG	9 cut(s)	49, 234, 250, 422, 451, 460, 560, 697, 729
HspAI	GCGC	2 cut(s)	250, 729
KroI	GCCGGC	1 cut(s)	287
KroNI	GCCGGC	1 cut(s)	289
Kzo9I	GATC	3 cut(s)	32, 739, 925
LmnI	GCTCC	2 cut(s)	458, 569
Lsp1109I	GCAGC	2 cut(s)	66, 210
MaeI	CTAG	1 cut(s)	921
MaeII	ACGT	5 cut(s)	320, 386, 409, 440, 597
MaeIII	GTNAC	3 cut(s)	382, 410, 470
MalI	GATC	3 cut(s)	34, 741, 927
MboI	GATC	3 cut(s)	32, 739, 925
MboII	GAAGA	6 cut(s)	112, 160, 169, 317, 488, 730
MflI	RGATCY	1 cut(s)	32
MhlI	GDGCHC	3 cut(s)	351, 438, 455
MlsI	TGGCCA	2 cut(s)	44, 592
MluCI	AATT	2 cut(s)	20, 103
MluNI	TGGCCA	2 cut(s)	44, 592
MlyI	GAGTC	3 cut(s)	273, 458, 522
Mox20I	TGGCCA	2 cut(s)	44, 592
MroNI	GCCGGC	1 cut(s)	287
MscI	TGGCCA	2 cut(s)	44, 592
MseI	TTAA	1 cut(s)	846
Msp20I	TGGCCA	2 cut(s)	44, 592
MspA1I	CMGCKG	1 cut(s)	302
MspI	CCGG	3 cut(s)	288, 373, 627
MspR9I	CCNGG	3 cut(s)	568, 683, 778
MvaI	CCWGG	3 cut(s)	568, 683, 778
MvnI	CGCG	1 cut(s)	549
MwoI	GCNNNNNNNGC	5 cut(s)	256, 293, 422, 543, 598
NaeI	GCCGGC	1 cut(s)	289
NcoI	CCATGG	1 cut(s)	45
NdeI	CATATG	2 cut(s)	577, 671
NdeII	GATC	3 cut(s)	32, 739, 925
NgoMIV	GCCGGC	1 cut(s)	287
NlaIII	CATG	9 cut(s)	49, 234, 250, 422, 451, 460, 560, 697, 729
NlaIV	GGNNCC	2 cut(s)	292, 565
NmuCI	GTSAC	2 cut(s)	382, 470
PagI	TCATGA	1 cut(s)	447
PcsI	WCGNNNNNNNCGW	3 cut(s)	156, 168, 480
PdiI	GCCGGC	1 cut(s)	289
PfeI	GAWTC	1 cut(s)	209
PfoI	TCCNGGA	2 cut(s)	566, 776
PinAI	ACCGGT	1 cut(s)	626
PkrI	GCNGC	5 cut(s)	56, 225, 424, 548, 688
PleI	GAGTC	3 cut(s)	272, 458, 522
PmaCI	CACGTG	1 cut(s)	441
PmlI	CACGTG	1 cut(s)	441
PpsI	GAGTC	3 cut(s)	272, 458, 522
Ppu21I	YACGTR	1 cut(s)	441
Psp124BI	GAGCTC	2 cut(s)	351, 455
Psp6I	CCWGG	3 cut(s)	566, 681, 776
PspCI	CACGTG	1 cut(s)	441
PspGI	CCWGG	3 cut(s)	566, 681, 776
PspN4I	GGNNCC	2 cut(s)	292, 565
PspPI	GGNCC	4 cut(s)	424, 487, 774, 824
PsuI	RGATCY	1 cut(s)	32
RsaI	GTAC	4 cut(s)	461, 494, 755, 799
RsaNI	GTAC	4 cut(s)	460, 493, 754, 798
SacI	GAGCTC	2 cut(s)	351, 455
SaqAI	TTAA	1 cut(s)	846
SatI	GCNGC	5 cut(s)	55, 224, 423, 547, 687
Sau3AI	GATC	3 cut(s)	32, 739, 925
Sau96I	GGNCC	4 cut(s)	424, 487, 774, 824
ScaI	AGTACT	1 cut(s)	799
SchI	GAGTC	3 cut(s)	273, 458, 522
ScrFI	CCNGG	3 cut(s)	568, 683, 778
SduI	GDGCHC	3 cut(s)	351, 438, 455
SfcI	CTRYAG	1 cut(s)	655
SinI	GGWCC	3 cut(s)	487, 774, 824
SmlI	CTYRAG	1 cut(s)	466
SmoI	CTYRAG	1 cut(s)	466
Sse9I	AATT	2 cut(s)	20, 103
SsiI	CCGC	9 cut(s)	294, 302, 395, 422, 547, 687, 827, 869, 887
SspMI	CTAG	1 cut(s)	921
SstI	GAGCTC	2 cut(s)	351, 455
StyD4I	CCNGG	3 cut(s)	566, 681, 776
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	1 cut(s)	513
TaiI	ACGT	5 cut(s)	323, 389, 412, 443, 600
TaqI	TCGA	2 cut(s)	518, 879
TasI	AATT	2 cut(s)	20, 103
TatI	WGTACW	1 cut(s)	797
TauI	GCSGC	3 cut(s)	425, 549, 689
TfiI	GAWTC	1 cut(s)	209
Tru1I	TTAA	1 cut(s)	846
Tru9I	TTAA	1 cut(s)	846
TscAI	CASTG	4 cut(s)	260, 289, 764, 792
TseFI	GTSAC	2 cut(s)	382, 470
TseI	GCWGC	2 cut(s)	54, 223
Tsp45I	GTSAC	2 cut(s)	382, 470
TspDTI	ATGAA	3 cut(s)	219, 436, 628
TspRI	CASTG	4 cut(s)	260, 289, 764, 792
VpaK11BI	GGWCC	3 cut(s)	487, 774, 824
XspI	CTAG	1 cut(s)	921
ZrmI	AGTACT	1 cut(s)	799

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.