Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0004099

Physical Location & Seq

Genomic Coordinates Reverse (-)

49692965 .. 49697669

Gene Structure 4705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG433300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGAGGTTGAGCGAATCATGCTTGGCCCTGAACAAATCATGGAAGTGAAAAGCAGTGCCAGACCACTCGACAAACCGAAGAGCTTGAGCCCCTCAATAACCCTACTCCTCATAGGCCTCTTTTCGCTATCTCTCATTCTCATCCTATTTCATGGCTTTTCTTCACTCTCCATCTCTTCTGCTTCATGTGATATCCAGAAATGGAGAAGTGAACTTGGTGCCAACAACAATGATGCTCGTGATGATCTTAACTCGAAGCTGCGAGACTCGGTTACTTTCCTTCCTCTCAAAGACCTGAGGTTCACTAAAACTGCAATGGAGGGCAACACTTGGTTTATGAGCTCTTTCAACGACACATACGAGGAAAATGAATCCCAATACCTCTATTTCCCTTCACAAGCGTCAAAGGGAAGACTTCTATGCATCAAAGGTCATGACCAAAAAGATGGCACCAAGAACTCATATGCCTTGGCATGGCCTCAAAGTCTACCAAACTCCACCACAGTCTTGAAGGGCCTCACCTTTGTGTCTGACACATACTATGATTATGTAAACTTGTGGCATGGACTCTCTGCAATGGTCCCTTTTGTGGGTTGGTCCATGAAGAACAGGTGTTTGAAGCCAACGAGATGGGTGTTGTTCCATTGGGGAGAGCTGAGAGACAAAATGGGGTTGTGGCTTCAGAACCTAATGGAAGCAAACTTAGGGAAAGTGCTGATTGAAGAAATGGGAAAAGGAGAAGGGCCTTATTGTTTTGAGAAGGCTGTTGTGATGAGACATAATGTTGGGAAAATGGGGAAAGAGAAGAAGCGTCAAGTGTCTGACTTATTGAGATGTAAAGCAAGAGTGTTTTGTGGCATAAATCCTTCAGGTAGAGGGAAAGAGGTTGGTGTGAGTGGGGAGCCAATTATAAGGCTAACTTTGCTAATGAGGAGAGGTTCAAGATCATTCAAGGATCCAACGGCTGTGATTAGTATATTTGCAAGGGAGTGTGCATTGGTGGATGGGTGCTTGTTAGAGGTTGTTCAGTCTGAAGACCAAAGTTTCTGTGATCAGGTTTGCCCTCTTCTCTATTACATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF563

Protein Analysis

360

Amino Acids

40.7

Weight (kDa)

8.7

Isoelectric Point (pI)

44.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33590 AT4G33600
fragaria_vesca	FvH4_2g11820 FvH4_5g35970
malus_domestica	MD05G1047000.v1.1 MD08G1191500.v1.1 MD15G1380300.v1.1
prunus_persica	Prupe.1G526500_v2.0.a1 Prupe.8G066800_v2.0.a1
pyrus_communis	pycom15g34060
rosa_chinensis	RchiOBHm_Chr4g0390351 RchiOBHm_Chr7g0237711
rosa_laevigata	RLG00000000975 RLG00000009924
rosa_multiflora	Rmu_co8254707.1_g000001 Rmu_co8428079.1_g000001 Rmu_sc0029360.1_g000001 Rmu_sc0029361.1_g000001 Rmu_ssc0000067.1_g000045
rosa_roxburghii	Rroxscaffold_3G00223850 Rroxscaffold_5G00336450
rosa_rugosa	Rorug03G0330300 Rorug07G0306500
rosa_samantha	Rh4AG031800 Rh4BG026000 Rh4CG035000 Rh4DG027600 Rh7AG463300 Rh7BG433300 Rh7CG480200 Rh7DG449200
rosa_wichuraiana	Rw4G002530 Rw7G038330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	911
AccB1I	GGYRCC	2 cut(s)	218, 449
AccI	GTMKAC	1 cut(s)	487
AclWI	GGATC	2 cut(s)	950, 963
AcuI	CTGAAG	3 cut(s)	665, 852, 1053
AfiI	CCNNNNNNNGG	3 cut(s)	474, 589, 590
AgsI	TTSAA	6 cut(s)	349, 511, 619, 722, 942, 952
AleI	CACNNNNGTG	1 cut(s)	524
AluBI	AGCT	4 cut(s)	84, 259, 342, 655
AluI	AGCT	4 cut(s)	84, 259, 342, 655
Alw21I	GWGCWC	1 cut(s)	344
Alw26I	GTCTC	3 cut(s)	258, 654, 769
AlwI	GGATC	2 cut(s)	950, 963
AoxI	GGCC	5 cut(s)	25, 115, 476, 514, 743
ApeKI	GCWGC	1 cut(s)	259
AspS9I	GGNCC	5 cut(s)	26, 514, 580, 597, 743
AsuHPI	GGTGA	1 cut(s)	511
AvaII	GGWCC	2 cut(s)	580, 597
AxyI	CCTNAGG	1 cut(s)	296
BamHI	GGATCC	1 cut(s)	955
BanI	GGYRCC	2 cut(s)	218, 449
BanII	GRGCYC	2 cut(s)	92, 344
BauI	CACGAG	1 cut(s)	237
BbsI	GAAGAC	2 cut(s)	418, 1041
Bbv12I	GWGCWC	1 cut(s)	344
BbvI	GCAGC	1 cut(s)	246
BccI	CCATC	4 cut(s)	179, 440, 624, 998
BceAI	ACGGC	1 cut(s)	978
BclI	TGATCA	1 cut(s)	1051
BcoDI	GTCTC	3 cut(s)	258, 654, 769
BisI	GCNGC	1 cut(s)	260
BlsI	GCNGC	1 cut(s)	261
Bme18I	GGWCC	2 cut(s)	580, 597
BmgT120I	GGNCC	5 cut(s)	26, 514, 580, 597, 743
BmiI	GGNNCC	5 cut(s)	220, 451, 582, 903, 957
BmsI	GCATC	2 cut(s)	223, 432
BpiI	GAAGAC	2 cut(s)	418, 1041
BpuEI	CTTGAG	1 cut(s)	106
BsaJI	CCNNGG	1 cut(s)	468
Bsc4I	CCNNNNNNNGG	3 cut(s)	474, 589, 590
Bse21I	CCTNAGG	1 cut(s)	296
Bse3DI	GCAATG	2 cut(s)	321, 582
BseDI	CCNNGG	1 cut(s)	468
BseGI	GGATG	2 cut(s)	141, 1009
BseLI	CCNNNNNNNGG	3 cut(s)	474, 589, 590
BseMI	GCAATG	2 cut(s)	321, 582
BseMII	CTCAG	2 cut(s)	287, 647
BseRI	GAGGAG	2 cut(s)	98, 946
BseXI	GCAGC	1 cut(s)	246
BshFI	GGCC	5 cut(s)	27, 117, 478, 516, 745
BshNI	GGYRCC	2 cut(s)	218, 449
BsiHKAI	GWGCWC	1 cut(s)	344
BslFI	GGGAC	1 cut(s)	566
BslI	CCNNNNNNNGG	3 cut(s)	474, 589, 590
BsmAI	GTCTC	3 cut(s)	258, 654, 769
BsmFI	GGGAC	1 cut(s)	566
BsnI	GGCC	5 cut(s)	27, 117, 478, 516, 745
Bsp1286I	GDGCHC	2 cut(s)	92, 344
Bsp143I	GATC	4 cut(s)	244, 944, 955, 1051
BspANI	GGCC	5 cut(s)	27, 117, 478, 516, 745
BspCNI	CTCAG	2 cut(s)	288, 648
BspHI	TCATGA	1 cut(s)	433
BspLI	GGNNCC	5 cut(s)	220, 451, 582, 903, 957
BspPI	GGATC	2 cut(s)	950, 963
BspQI	GCTCTTC	1 cut(s)	74
BspT107I	GGYRCC	2 cut(s)	218, 449
BsrDI	GCAATG	2 cut(s)	321, 582
BssECI	CCNNGG	1 cut(s)	468
BssMI	GATC	4 cut(s)	244, 944, 955, 1051
BssSI	CACGAG	1 cut(s)	237
BssT1I	CCWWGG	1 cut(s)	468
Bst2BI	CACGAG	1 cut(s)	237
Bst4CI	ACNGT	1 cut(s)	505
Bst6I	CTCTTC	3 cut(s)	74, 181, 1071
BstDEI	CTNAG	3 cut(s)	296, 656, 703
BstF5I	GGATG	2 cut(s)	141, 1009
BstKTI	GATC	4 cut(s)	247, 947, 958, 1054
BstMAI	GTCTC	3 cut(s)	258, 654, 769
BstMBI	GATC	4 cut(s)	244, 944, 955, 1051
BstMWI	GCNNNNNNNGC	2 cut(s)	19, 922
BstV1I	GCAGC	1 cut(s)	246
BstV2I	GAAGAC	2 cut(s)	418, 1041
BstX2I	RGATCY	1 cut(s)	955
BstXI	CCANNNNNNTGG	2 cut(s)	446, 630
BstYI	RGATCY	1 cut(s)	955
Bsu36I	CCTNAGG	1 cut(s)	296
BsuRI	GGCC	5 cut(s)	27, 117, 478, 516, 745
BtsCI	GGATG	2 cut(s)	141, 1009
BtsI	GCAGTG	1 cut(s)	61
BtsIMutI	CAGTG	1 cut(s)	61
CciI	TCATGA	1 cut(s)	433
Cfr13I	GGNCC	5 cut(s)	26, 514, 580, 597, 743
CseI	GACGC	2 cut(s)	390, 800
CviAII	CATG	8 cut(s)	19, 40, 152, 186, 434, 474, 563, 601
DdeI	CTNAG	3 cut(s)	296, 656, 703
DpnI	GATC	4 cut(s)	246, 946, 957, 1053
DpnII	GATC	4 cut(s)	244, 944, 955, 1051
Eam1104I	CTCTTC	3 cut(s)	74, 181, 1071
EarI	CTCTTC	3 cut(s)	74, 181, 1071
Ecl136II	GAGCTC	1 cut(s)	342
Eco130I	CCWWGG	1 cut(s)	468
Eco147I	AGGCCT	1 cut(s)	117
Eco24I	GRGCYC	2 cut(s)	92, 344
Eco32I	GATATC	1 cut(s)	193
Eco47I	GGWCC	2 cut(s)	580, 597
Eco53kI	GAGCTC	1 cut(s)	342
Eco57I	CTGAAG	3 cut(s)	665, 852, 1053
Eco81I	CCTNAGG	1 cut(s)	296
EcoICRI	GAGCTC	1 cut(s)	342
EcoO109I	RGGNCCY	2 cut(s)	514, 743
EcoRV	GATATC	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	468
EcoT22I	ATGCAT	1 cut(s)	425
EcoT38I	GRGCYC	2 cut(s)	92, 344
ErhI	CCWWGG	1 cut(s)	468
FaeI	CATG	8 cut(s)	22, 43, 155, 189, 437, 477, 566, 604
FalI	AAGNNNNNCTT	2 cut(s)	904, 936
FaqI	GGGAC	1 cut(s)	566
FatI	CATG	8 cut(s)	18, 39, 151, 185, 433, 473, 562, 600
FauNDI	CATATG	1 cut(s)	463
FbaI	TGATCA	1 cut(s)	1051
FblI	GTMKAC	1 cut(s)	487
Fnu4HI	GCNGC	1 cut(s)	260
FokI	GGATG	2 cut(s)	128, 1016
FriOI	GRGCYC	2 cut(s)	92, 344
Fsp4HI	GCNGC	1 cut(s)	260
GluI	GCNGC	1 cut(s)	260
HaeIII	GGCC	5 cut(s)	27, 117, 478, 516, 745
HgaI	GACGC	2 cut(s)	390, 800
Hin1II	CATG	8 cut(s)	22, 43, 155, 189, 437, 477, 566, 604
HinfI	GANTC	4 cut(s)	15, 266, 371, 567
HphI	GGTGA	1 cut(s)	511
Hpy166II	GTNNAC	4 cut(s)	212, 303, 488, 553
Hpy188I	TCNGA	5 cut(s)	532, 684, 823, 1033, 1082
Hpy188III	TCNNGA	5 cut(s)	196, 239, 434, 508, 942
Hpy8I	GTNNAC	4 cut(s)	212, 303, 488, 553
HpyAV	CCTTC	6 cut(s)	290, 402, 505, 734, 754, 876
HpyCH4III	ACNGT	1 cut(s)	505
HpyCH4V	TGCA	5 cut(s)	314, 423, 575, 983, 995
HpyF10VI	GCNNNNNNNGC	2 cut(s)	19, 922
HpyF3I	CTNAG	3 cut(s)	296, 656, 703
Hsp92II	CATG	8 cut(s)	22, 43, 155, 189, 437, 477, 566, 604
Ksp22I	TGATCA	1 cut(s)	1051
Kzo9I	GATC	4 cut(s)	244, 944, 955, 1051
LguI	GCTCTTC	1 cut(s)	74
LmnI	GCTCC	1 cut(s)	901
LpnPI	CCDG	7 cut(s)	42, 73, 209, 308, 595, 855, 1040
Lsp1109I	GCAGC	1 cut(s)	246
LweI	GCATC	2 cut(s)	223, 432
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	4 cut(s)	246, 946, 957, 1053
MboI	GATC	4 cut(s)	244, 944, 955, 1051
MboII	GAAGA	9 cut(s)	91, 153, 168, 423, 616, 734, 817, 1046, 1058
MflI	RGATCY	1 cut(s)	955
MhlI	GDGCHC	2 cut(s)	92, 344
MluCI	AATT	1 cut(s)	906
MlyI	GAGTC	2 cut(s)	260, 561
MmeI	TCCRAC	1 cut(s)	983
Mph1103I	ATGCAT	1 cut(s)	425
MseI	TTAA	1 cut(s)	249
MslI	CAYNNNNRTG	2 cut(s)	44, 524
MwoI	GCNNNNNNNGC	2 cut(s)	19, 922
NdeI	CATATG	1 cut(s)	463
NdeII	GATC	4 cut(s)	244, 944, 955, 1051
NlaIII	CATG	8 cut(s)	22, 43, 155, 189, 437, 477, 566, 604
NlaIV	GGNNCC	5 cut(s)	220, 451, 582, 903, 957
NsiI	ATGCAT	1 cut(s)	425
OliI	CACNNNNGTG	1 cut(s)	524
PagI	TCATGA	1 cut(s)	433
PceI	AGGCCT	1 cut(s)	117
PciSI	GCTCTTC	1 cut(s)	74
PcsI	WCGNNNNNNNCGW	1 cut(s)	357
PfeI	GAWTC	2 cut(s)	15, 371
PkrI	GCNGC	1 cut(s)	261
PleI	GAGTC	2 cut(s)	260, 561
PpsI	GAGTC	2 cut(s)	260, 561
PsiI	TTATAA	1 cut(s)	911
Psp124BI	GAGCTC	1 cut(s)	344
PspN4I	GGNNCC	5 cut(s)	220, 451, 582, 903, 957
PspPI	GGNCC	5 cut(s)	26, 514, 580, 597, 743
PsuI	RGATCY	1 cut(s)	955
RseI	CAYNNNNRTG	2 cut(s)	44, 524
SacI	GAGCTC	1 cut(s)	344
SapI	GCTCTTC	1 cut(s)	74
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	1 cut(s)	260
Sau3AI	GATC	4 cut(s)	244, 944, 955, 1051
Sau96I	GGNCC	5 cut(s)	26, 514, 580, 597, 743
SchI	GAGTC	2 cut(s)	260, 561
SduI	GDGCHC	2 cut(s)	92, 344
SfaNI	GCATC	2 cut(s)	223, 432
SinI	GGWCC	2 cut(s)	580, 597
SmiMI	CAYNNNNRTG	2 cut(s)	44, 524
SmlI	CTYRAG	1 cut(s)	85
SmoI	CTYRAG	1 cut(s)	85
Sse9I	AATT	1 cut(s)	906
SseBI	AGGCCT	1 cut(s)	117
SstI	GAGCTC	1 cut(s)	344
StuI	AGGCCT	1 cut(s)	117
StyI	CCWWGG	1 cut(s)	468
TaaI	ACNGT	1 cut(s)	505
TaqI	TCGA	2 cut(s)	69, 254
TasI	AATT	1 cut(s)	906
TfiI	GAWTC	2 cut(s)	15, 371
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TscAI	CASTG	1 cut(s)	61
TseI	GCWGC	1 cut(s)	259
TspDTI	ATGAA	4 cut(s)	140, 174, 384, 617
TspRI	CASTG	1 cut(s)	61
VpaK11BI	GGWCC	2 cut(s)	580, 597
XmiI	GTMKAC	1 cut(s)	487
Zsp2I	ATGCAT	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.