Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0004099

Physical Location & Seq

Genomic Coordinates Forward (+)

7148427 .. 7200106

Gene Structure 51680 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG035000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2181 bp

ATGGTGAAAGCACCTCCAGAATTAGTAGAAAGATCCTCTATGGCCATGGACAGCAGCAGAGTAGCTCATCACCACAATCTCAAACATCATTCCCAACGCCCTAATTCTATTTCGTCTTTCTTCTCCCCAAAGCTCTCCATCTACATCCTCGCTTCCTGCGTCGCCCTCTTCGTCATCTTCCACATCCAGTCCCTTCAAACTCCACCTGAATCCACATCGTTGCTGCCTTCATGGTCTCTCAATCTCATGCGCCAGTGGCAGAGAGTCATCAACACCACTACCACTGCCGGCACCGCCACAGCGGAAGAAACTACATCCACGTCCTTCACCAACAACTACACCAGCGAGCTCAACGCACTAAGAGACAAACTCCGGCAGTCAGTCACGTTTCTCCCGCTAAAGGACTTACGTTACGCCCATGCGGCCCTCGTCGGGCACACGTGGTTCATGAGCTCCATGTACGACTCAAGTGACGAAGAAGGCGAGGTCCAGTACCAGCACTTCCCTTCACAGTTGTCGAGCAACAGACTCCTCTGCCTCAAAGGCCGCGACAACCATGACGGCTCCTGGAACTCATATGCCCTTGCGTGGCCAGACGTGCTTCCCCACAACGCAACCCTAATAACCGGTCTGTCCTTCATTTCCTACAACCACTACAGCTACGACAACATATGGCACGGCCTGGCCGCCGTCATGCCCTTTGTAGCGTGGCACAAGAAGAACTCATGCGCCAAACCTGATCGGTGGATTTTGTACCACTGGGGGGAGATTAGGTCCAGGATGGCAGTGTGGCTTAGTACTCTTATGGAGGCTACTTTTGGAGGTCCGCCGTTCGTGGAAGTGTTTAACGGGGTTGAGGAAGGGAGGGCGGTTTGTTTCGAGGAGGCGGTGGTGATGAGGCACAACGAAGGTGGGATGTCTAGGGATCAGAGAATGGAGGTTTATGATCTAATGCGGTGTAAGGCCAGGGCTTACTGTAATGTGAGTTCGGAAGGGGAAGATCGTCGGAGGAAGATTGGAATGACGTTGCTCATGAGGACAGGGCCGAGATCGTTCAAGAACGAGGGTGCGGTGGTTGGGGTCTTTGAGAAAGAGTGTGCCAAGGTTGACGGTTGCCGCTTGGTGGTGGCTCACTCCAACAACCTTACTTTCTGTGACCAGGTGAAGCTAATGAGCATGACCGATATTTTGATGTCACCACACGGCGCGCAGTTAACCAACATGTTCTTAATGGATAGAAACAGTAGTGTGATGGAGTTCTTCCCAAAAGGGTGGCTAAAACTAGCCGGTGTAGGACAATTCGTCTATCACTGGATTGCCAGTTGGTCGGGTATGAGACACCATGGTGCATGGCGAGACCCGAACGGAGAACTTTGCCAGTACAGTGAAGACGATCGCCGATGCATGTCCCTCTACAAGAATGGCAAAATTGGATACAATGAAACATATTTTTCTGAGTGGAGTAGAAATATACTCAATGAAGTTAAGAAAAGGAAGATGGAAGAAGTAGCAAATGAAAAGCTGAAAATTGAGCTTGGCAAAGTTAGAGATGAATTTAAAATGTCAGAGTCAAATTGTGGTTCTGCACGAGTTCAAGTGGCACAACTCACAACTAAGATCAAACATATGTCTTCAGTTTTACACAAAAAGGATAAGCATTCACTTAAGGGTCTTCAAGCAATGGTGCAGAGGAGAAAGAAGCTATTAAAGTATCTTCGAAGAACTGACTGGGACTCTTACTGCCTTGTTCTCTCCAAACTTGGTCTCCGGGACACGCCAGATGTCAAACAAGAATTGGACCATCAAATTGAAATAAGGTTATTGAGGATTCAATTGCGTTCTCATTTGGGTTGGCACCTATACTTGCCATTTGCTAGGCTTGAATCTCCTGGATCTTATGTGTCAACTTTGCAGGTAATGGAACTACAACTTCCTTCCTTTCTTGACAATTTTGATCCCTGGGCTGCTGCTGCTAATGTCCATCAAGTGTTCAAGCATATCTTAGCTGGACTTACATTTGCTTTAACGGCTTCTCTATGCAGTACACCAGTGCTAGCCACTGCTAGGATATGTACCAATGTCGAAGAAGCTGGTGGTGGCTCTATGGTTTCAAGAAGAGCCCTCGCTCATCTATCTTTTGTTCAAGTCATACCTATTATTTGGTTTAGGTGTAATGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF563

Protein Analysis

726

Amino Acids

82.86

Weight (kDa)

9.03

Isoelectric Point (pI)

52.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_61	PF04577	273 - 418	3e-13	Glycosyltransferase 61
Ribosomal_S15	PF00312	515 - 590	4.2e-22	Ribosomal protein S15

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33590 AT4G33600
fragaria_vesca	FvH4_2g11820 FvH4_5g35970
malus_domestica	MD05G1047000.v1.1 MD08G1191500.v1.1 MD15G1380300.v1.1
prunus_persica	Prupe.1G526500_v2.0.a1 Prupe.8G066800_v2.0.a1
pyrus_communis	pycom15g34060
rosa_chinensis	RchiOBHm_Chr4g0390351 RchiOBHm_Chr7g0237711
rosa_laevigata	RLG00000000975 RLG00000009924
rosa_multiflora	Rmu_co8254707.1_g000001 Rmu_co8428079.1_g000001 Rmu_sc0029360.1_g000001 Rmu_sc0029361.1_g000001 Rmu_ssc0000067.1_g000045
rosa_roxburghii	Rroxscaffold_3G00223850 Rroxscaffold_5G00336450
rosa_rugosa	Rorug03G0330300 Rorug07G0306500
rosa_samantha	Rh4AG031800 Rh4BG026000 Rh4CG035000 Rh4DG027600 Rh7AG463300 Rh7BG433300 Rh7CG480200 Rh7DG449200
rosa_wichuraiana	Rw4G002530 Rw7G038330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1903
AccB1I	GGYRCC	2 cut(s)	290, 1854
AccII	CGCG	2 cut(s)	549, 1208
AclWI	GGATC	4 cut(s)	27, 933, 1900, 1949
AcoI	YGGCCR	3 cut(s)	42, 590, 684
AcsI	RAATTY	1 cut(s)	1553
AcuI	CTGAAG	1 cut(s)	1617
AcvI	CACGTG	1 cut(s)	441
AfaI	GTAC	7 cut(s)	461, 494, 755, 799, 1382, 2044, 2074
AfiI	CCNNNNNNNGG	6 cut(s)	400, 432, 588, 763, 1123, 2064
AflII	CTTAAG	1 cut(s)	1664
AflIII	ACRYGT	2 cut(s)	438, 1221
AgeI	ACCGGT	1 cut(s)	626
AhdI	GACNNNNNGTC	1 cut(s)	1301
AjiI	CACGTC	2 cut(s)	321, 598
AjnI	CCWGG	7 cut(s)	566, 681, 776, 965, 1158, 1888, 1958
AleI	CACNNNNGTG	1 cut(s)	1344
Alw21I	GWGCWC	2 cut(s)	351, 455
Alw26I	GTCTC	5 cut(s)	240, 357, 1330, 1350, 1769
AlwI	GGATC	4 cut(s)	27, 933, 1900, 1949
AoxI	GGCC	8 cut(s)	42, 423, 544, 590, 679, 684, 963, 1043
ApeKI	GCWGC	5 cut(s)	54, 223, 1964, 1967, 1970
ApoI	RAATTY	1 cut(s)	1553
ArsI	GACNNNNNNTTYG	2 cut(s)	1171, 1203
AsiGI	ACCGGT	1 cut(s)	626
AspLEI	GCGC	4 cut(s)	252, 731, 1208, 1210
AspS9I	GGNCC	6 cut(s)	424, 487, 774, 824, 1043, 1798
AsuC2I	CCSGG	1 cut(s)	1769
AsuHPI	GGTGA	6 cut(s)	16, 62, 319, 904, 1174, 1188
AsuII	TTCGAA	1 cut(s)	1717
AsuNHI	GCTAGC	1 cut(s)	2053
AvaII	GGWCC	4 cut(s)	487, 774, 824, 1798
BaeGI	GKGCMC	1 cut(s)	438
BalI	TGGCCA	2 cut(s)	44, 592
BanI	GGYRCC	2 cut(s)	290, 1854
BanII	GRGCYC	3 cut(s)	351, 455, 2122
BarI	GAAGNNNNNNTAC	2 cut(s)	485, 517
BauI	CACGAG	1 cut(s)	1587
BbrPI	CACGTG	1 cut(s)	441
BbsI	GAAGAC	3 cut(s)	1395, 1623, 1664
Bbv12I	GWGCWC	2 cut(s)	351, 455
BbvI	GCAGC	5 cut(s)	66, 210, 1951, 1954, 1957
BccI	CCATC	6 cut(s)	146, 775, 1246, 1492, 1809, 1989
BceAI	ACGGC	6 cut(s)	577, 674, 694, 814, 1219, 2043
BciT130I	CCWGG	7 cut(s)	568, 683, 778, 967, 1160, 1890, 1960
BciVI	GTATCC	1 cut(s)	1427
BcnI	CCSGG	1 cut(s)	1769
BcoDI	GTCTC	5 cut(s)	240, 357, 1330, 1350, 1769
BfaI	CTAG	5 cut(s)	921, 1283, 1875, 2054, 2064
BfmI	CTRYAG	1 cut(s)	655
BfrI	CTTAAG	1 cut(s)	1664
BfuAI	ACCTGC	1 cut(s)	1903
BfuI	GTATCC	1 cut(s)	1427
BglI	GCCNNNNNGGC	2 cut(s)	422, 543
BisI	GCNGC	9 cut(s)	55, 224, 423, 547, 687, 1117, 1965, 1968, 1971
BlsI	GCNGC	9 cut(s)	56, 225, 424, 548, 688, 1118, 1966, 1969, 1972
BmcAI	AGTACT	1 cut(s)	799
Bme1390I	CCNGG	8 cut(s)	568, 683, 778, 967, 1160, 1769, 1890, 1960
Bme18I	GGWCC	4 cut(s)	487, 774, 824, 1798
BmeRI	GACNNNNNGTC	1 cut(s)	1301
BmgBI	CACGTC	2 cut(s)	321, 598
BmgT120I	GGNCC	6 cut(s)	424, 487, 774, 824, 1043, 1798
BmiI	GGNNCC	3 cut(s)	292, 565, 1856
BmrFI	CCNGG	8 cut(s)	568, 683, 778, 967, 1160, 1769, 1890, 1960
BmrI	ACTGGG	2 cut(s)	769, 1738
BmsI	GCATC	1 cut(s)	1391
BmtI	GCTAGC	1 cut(s)	2057
BmuI	ACTGGG	2 cut(s)	769, 1738
BpiI	GAAGAC	3 cut(s)	1395, 1623, 1664
BplI	GAGNNNNNCTC	2 cut(s)	354, 386
Bpu14I	TTCGAA	1 cut(s)	1717
BpuEI	CTTGAG	1 cut(s)	451
BpuMI	CCSGG	1 cut(s)	1769
BsaAI	YACGTR	1 cut(s)	441
BsaI	GGTCTC	3 cut(s)	240, 1350, 1769
BsaJI	CCNNGG	6 cut(s)	45, 966, 1101, 1342, 1958, 1959
BsaWI	WCCGGW	1 cut(s)	626
BsaXI	ACNNNNNCTCC	4 cut(s)	758, 788, 1749, 1779
Bsc4I	CCNNNNNNNGG	6 cut(s)	400, 432, 588, 763, 1123, 2064
Bse118I	RCCGGY	3 cut(s)	287, 626, 1286
Bse1I	ACTGG	9 cut(s)	187, 253, 490, 764, 1316, 1320, 1378, 1733, 2048
Bse3DI	GCAATG	1 cut(s)	1686
BseBI	CCWGG	7 cut(s)	568, 683, 778, 967, 1160, 1890, 1960
BseDI	CCNNGG	6 cut(s)	45, 966, 1101, 1342, 1958, 1959
BseGI	GGATG	5 cut(s)	144, 183, 314, 786, 921
BseLI	CCNNNNNNNGG	6 cut(s)	400, 432, 588, 763, 1123, 2064
BseMI	GCAATG	1 cut(s)	1686
BseMII	CTCAG	1 cut(s)	1446
BseNI	ACTGG	9 cut(s)	187, 253, 490, 764, 1316, 1320, 1378, 1733, 2048
BsePI	GCGCGC	1 cut(s)	1206
BseRI	GAGGAG	3 cut(s)	521, 896, 1705
BseSI	GKGCMC	1 cut(s)	438
BseXI	GCAGC	5 cut(s)	66, 210, 1951, 1954, 1957
BsgI	GTGCAG	2 cut(s)	1569, 1706
Bsh1236I	CGCG	2 cut(s)	549, 1208
Bsh1285I	CGRYCG	1 cut(s)	1396
BshFI	GGCC	8 cut(s)	44, 425, 546, 592, 681, 686, 965, 1045
BshNI	GGYRCC	2 cut(s)	290, 1854
BshTI	ACCGGT	1 cut(s)	626
BsiEI	CGRYCG	1 cut(s)	1396
BsiHKAI	GWGCWC	2 cut(s)	351, 455
BsiSI	CCGG	5 cut(s)	288, 373, 627, 1287, 1768
BslFI	GGGAC	4 cut(s)	175, 1393, 1745, 1784
BslI	CCNNNNNNNGG	6 cut(s)	400, 432, 588, 763, 1123, 2064
BsmAI	GTCTC	5 cut(s)	240, 357, 1330, 1350, 1769
BsmFI	GGGAC	4 cut(s)	175, 1393, 1745, 1784
BsmI	GAATGC	1 cut(s)	1657
BsnI	GGCC	8 cut(s)	44, 425, 546, 592, 681, 686, 965, 1045
Bso31I	GGTCTC	3 cut(s)	240, 1350, 1769
Bsp119I	TTCGAA	1 cut(s)	1717
Bsp1286I	GDGCHC	4 cut(s)	351, 438, 455, 2122
Bsp19I	CCATGG	2 cut(s)	45, 1342
BspANI	GGCC	8 cut(s)	44, 425, 546, 592, 681, 686, 965, 1045
BspCNI	CTCAG	1 cut(s)	1447
BspFNI	CGCG	2 cut(s)	549, 1208
BspHI	TCATGA	2 cut(s)	447, 1032
BspLI	GGNNCC	3 cut(s)	292, 565, 1856
BspMI	ACCTGC	1 cut(s)	1903
BspOI	GCTAGC	1 cut(s)	2057
BspPI	GGATC	4 cut(s)	27, 933, 1900, 1949
BspQI	GCTCTTC	1 cut(s)	2110
BspT104I	TTCGAA	1 cut(s)	1717
BspT107I	GGYRCC	2 cut(s)	290, 1854
BspTI	CTTAAG	1 cut(s)	1664
BspTNI	GGTCTC	3 cut(s)	240, 1350, 1769
BsrDI	GCAATG	1 cut(s)	1686
BsrFI	RCCGGY	3 cut(s)	287, 626, 1286
BsrI	ACTGG	9 cut(s)	187, 253, 490, 764, 1316, 1320, 1378, 1733, 2048
BssAI	RCCGGY	3 cut(s)	287, 626, 1286
BssECI	CCNNGG	6 cut(s)	45, 966, 1101, 1342, 1958, 1959
BssHII	GCGCGC	1 cut(s)	1206
BssSI	CACGAG	1 cut(s)	1587
BssT1I	CCWWGG	3 cut(s)	45, 1101, 1342
Bst2BI	CACGAG	1 cut(s)	1587
Bst2UI	CCWGG	7 cut(s)	568, 683, 778, 967, 1160, 1890, 1960
Bst4CI	ACNGT	5 cut(s)	513, 977, 1112, 1244, 1385
Bst6I	CTCTTC	2 cut(s)	173, 2110
BstAFI	CTTAAG	1 cut(s)	1664
BstBAI	YACGTR	1 cut(s)	441
BstBI	TTCGAA	1 cut(s)	1717
BstC8I	GCNNGC	4 cut(s)	289, 347, 1208, 2055
BstDEI	CTNAG	5 cut(s)	359, 794, 1455, 1614, 2002
BstDSI	CCRYGG	2 cut(s)	45, 1342
BstF5I	GGATG	5 cut(s)	144, 183, 314, 786, 921
BstFNI	CGCG	2 cut(s)	549, 1208
BstHHI	GCGC	4 cut(s)	252, 731, 1208, 1210
BstMAI	GTCTC	5 cut(s)	240, 357, 1330, 1350, 1769
BstMCI	CGRYCG	1 cut(s)	1396
BstMWI	GCNNNNNNNGC	7 cut(s)	256, 293, 422, 543, 598, 1970, 2027
BstNI	CCWGG	7 cut(s)	568, 683, 778, 967, 1160, 1890, 1960
BstNSI	RCATGY	2 cut(s)	1225, 1408
BstSCI	CCNGG	8 cut(s)	566, 681, 776, 965, 1158, 1767, 1888, 1958
BstSFI	CTRYAG	1 cut(s)	655
BstSLI	GKGCMC	1 cut(s)	438
BstUI	CGCG	2 cut(s)	549, 1208
BstV1I	GCAGC	5 cut(s)	66, 210, 1951, 1954, 1957
BstV2I	GAAGAC	3 cut(s)	1395, 1623, 1664
BstX2I	RGATCY	2 cut(s)	32, 1892
BstXI	CCANNNNNNTGG	1 cut(s)	1272
BstYI	RGATCY	2 cut(s)	32, 1892
BsuI	GTATCC	1 cut(s)	1427
BsuRI	GGCC	8 cut(s)	44, 425, 546, 592, 681, 686, 965, 1045
BtgI	CCRYGG	2 cut(s)	45, 1342
BtrI	CACGTC	2 cut(s)	321, 598
BtsCI	GGATG	5 cut(s)	144, 183, 314, 786, 921
BtsI	GCAGTG	3 cut(s)	282, 792, 2058
BtsIMutI	CAGTG	8 cut(s)	260, 282, 757, 792, 1309, 1390, 2055, 2058
BveI	ACCTGC	1 cut(s)	1903
Cac8I	GCNNGC	4 cut(s)	289, 347, 1208, 2055
CciI	TCATGA	2 cut(s)	447, 1032
CfoI	GCGC	4 cut(s)	252, 731, 1208, 1210
Cfr10I	RCCGGY	3 cut(s)	287, 626, 1286
Cfr13I	GGNCC	6 cut(s)	424, 487, 774, 824, 1043, 1798
CseI	GACGC	1 cut(s)	148
CsiI	ACCWGGT	1 cut(s)	1158
Csp6I	GTAC	7 cut(s)	460, 493, 754, 798, 1381, 2043, 2073
CspAI	ACCGGT	1 cut(s)	626
CspCI	CAANNNNNGTGG	2 cut(s)	892, 927
CviQI	GTAC	7 cut(s)	460, 493, 754, 798, 1381, 2043, 2073
DdeI	CTNAG	5 cut(s)	359, 794, 1455, 1614, 2002
DraI	TTTAAA	1 cut(s)	1558
DriI	GACNNNNNGTC	1 cut(s)	1301
EaeI	YGGCCR	3 cut(s)	42, 590, 684
Eam1104I	CTCTTC	2 cut(s)	173, 2110
Eam1105I	GACNNNNNGTC	1 cut(s)	1301
EarI	CTCTTC	2 cut(s)	173, 2110
EciI	GGCGGA	1 cut(s)	816
Ecl136II	GAGCTC	2 cut(s)	349, 453
Eco130I	CCWWGG	3 cut(s)	45, 1101, 1342
Eco24I	GRGCYC	3 cut(s)	351, 455, 2122
Eco31I	GGTCTC	3 cut(s)	240, 1350, 1769
Eco47I	GGWCC	4 cut(s)	487, 774, 824, 1798
Eco53kI	GAGCTC	2 cut(s)	349, 453
Eco57I	CTGAAG	1 cut(s)	1617
Eco72I	CACGTG	1 cut(s)	441
EcoICRI	GAGCTC	2 cut(s)	349, 453
EcoRII	CCWGG	7 cut(s)	566, 681, 776, 965, 1158, 1888, 1958
EcoT14I	CCWWGG	3 cut(s)	45, 1101, 1342
EcoT22I	ATGCAT	1 cut(s)	1406
EcoT38I	GRGCYC	3 cut(s)	351, 455, 2122
ErhI	CCWWGG	3 cut(s)	45, 1101, 1342
FalI	AAGNNNNNCTT	2 cut(s)	1985, 2017
FaqI	GGGAC	4 cut(s)	175, 1393, 1745, 1784
FauI	CCCGC	1 cut(s)	402
FauNDI	CATATG	3 cut(s)	577, 671, 1626
Fnu4HI	GCNGC	9 cut(s)	55, 224, 423, 547, 687, 1117, 1965, 1968, 1971
FokI	GGATG	5 cut(s)	131, 170, 301, 793, 928
FriOI	GRGCYC	3 cut(s)	351, 455, 2122
Fsp4HI	GCNGC	9 cut(s)	55, 224, 423, 547, 687, 1117, 1965, 1968, 1971
FspBI	CTAG	5 cut(s)	921, 1283, 1875, 2054, 2064
GlaI	GCGC	4 cut(s)	251, 730, 1207, 1209
GluI	GCNGC	9 cut(s)	55, 224, 423, 547, 687, 1117, 1965, 1968, 1971
HaeIII	GGCC	8 cut(s)	44, 425, 546, 592, 681, 686, 965, 1045
HapII	CCGG	5 cut(s)	288, 373, 627, 1287, 1768
HgaI	GACGC	1 cut(s)	148
HhaI	GCGC	4 cut(s)	252, 731, 1208, 1210
Hin6I	GCGC	4 cut(s)	250, 729, 1206, 1208
HinP1I	GCGC	4 cut(s)	250, 729, 1206, 1208
HincII	GTYRAC	3 cut(s)	1108, 1215, 1905
HindII	GTYRAC	3 cut(s)	1108, 1215, 1905
HinfI	GANTC	8 cut(s)	209, 264, 464, 528, 1568, 1733, 1828, 1883
HpaI	GTTAAC	1 cut(s)	1215
HpaII	CCGG	5 cut(s)	288, 373, 627, 1287, 1768
HphI	GGTGA	6 cut(s)	16, 62, 319, 904, 1174, 1188
Hpy166II	GTNNAC	4 cut(s)	1108, 1215, 1905, 2045
Hpy188I	TCNGA	5 cut(s)	930, 991, 1008, 1456, 1567
Hpy188III	TCNNGA	6 cut(s)	17, 448, 1033, 1057, 1943, 2112
Hpy8I	GTNNAC	4 cut(s)	1108, 1215, 1905, 2045
Hpy99I	CGWCG	3 cut(s)	164, 434, 1008
HpyCH4III	ACNGT	5 cut(s)	513, 977, 1112, 1244, 1385
HpyCH4IV	ACGT	6 cut(s)	320, 386, 409, 440, 597, 1025
HpyCH4V	TGCA	6 cut(s)	1349, 1404, 1586, 1687, 1912, 2040
HpyF10VI	GCNNNNNNNGC	7 cut(s)	256, 293, 422, 543, 598, 1970, 2027
HpyF3I	CTNAG	5 cut(s)	359, 794, 1455, 1614, 2002
HpySE526I	ACGT	6 cut(s)	320, 386, 409, 440, 597, 1025
HspAI	GCGC	4 cut(s)	250, 729, 1206, 1208
KroI	GCCGGC	1 cut(s)	287
KroNI	GCCGGC	1 cut(s)	289
KspAI	GTTAAC	1 cut(s)	1215
LguI	GCTCTTC	1 cut(s)	2110
LmnI	GCTCC	2 cut(s)	458, 569
Lsp1109I	GCAGC	5 cut(s)	66, 210, 1951, 1954, 1957
LweI	GCATC	1 cut(s)	1391
MabI	ACCWGGT	1 cut(s)	1158
MaeI	CTAG	5 cut(s)	921, 1283, 1875, 2054, 2064
MaeII	ACGT	6 cut(s)	320, 386, 409, 440, 597, 1025
MaeIII	GTNAC	5 cut(s)	382, 410, 470, 1154, 1194
MfeI	CAATTG	1 cut(s)	1832
MflI	RGATCY	2 cut(s)	32, 1892
MhlI	GDGCHC	4 cut(s)	351, 438, 455, 2122
MlsI	TGGCCA	2 cut(s)	44, 592
MluNI	TGGCCA	2 cut(s)	44, 592
MlyI	GAGTC	5 cut(s)	273, 458, 522, 1577, 1727
MmeI	TCCRAC	2 cut(s)	986, 1161
Mox20I	TGGCCA	2 cut(s)	44, 592
Mph1103I	ATGCAT	1 cut(s)	1406
MroNI	GCCGGC	1 cut(s)	287
MscI	TGGCCA	2 cut(s)	44, 592
MseI	TTAA	8 cut(s)	846, 1214, 1229, 1485, 1557, 1665, 1706, 2024
MslI	CAYNNNNRTG	1 cut(s)	1344
Msp20I	TGGCCA	2 cut(s)	44, 592
MspA1I	CMGCKG	1 cut(s)	302
MspCI	CTTAAG	1 cut(s)	1664
MspI	CCGG	5 cut(s)	288, 373, 627, 1287, 1768
MspR9I	CCNGG	8 cut(s)	568, 683, 778, 967, 1160, 1769, 1890, 1960
MunI	CAATTG	1 cut(s)	1832
Mva1269I	GAATGC	1 cut(s)	1657
MvaI	CCWGG	7 cut(s)	568, 683, 778, 967, 1160, 1890, 1960
MvnI	CGCG	2 cut(s)	549, 1208
MwoI	GCNNNNNNNGC	7 cut(s)	256, 293, 422, 543, 598, 1970, 2027
NaeI	GCCGGC	1 cut(s)	289
NciI	CCSGG	1 cut(s)	1769
NcoI	CCATGG	2 cut(s)	45, 1342
NdeI	CATATG	3 cut(s)	577, 671, 1626
NgoMIV	GCCGGC	1 cut(s)	287
NheI	GCTAGC	1 cut(s)	2053
NlaIV	GGNNCC	3 cut(s)	292, 565, 1856
NmeAIII	GCCGAG	1 cut(s)	1071
NmuCI	GTSAC	4 cut(s)	382, 470, 1154, 1194
NsiI	ATGCAT	1 cut(s)	1406
NspI	RCATGY	2 cut(s)	1225, 1408
NspV	TTCGAA	1 cut(s)	1717
OliI	CACNNNNGTG	1 cut(s)	1344
PagI	TCATGA	2 cut(s)	447, 1032
PasI	CCCWGGG	1 cut(s)	1959
PauI	GCGCGC	1 cut(s)	1206
PciI	ACATGT	1 cut(s)	1221
PciSI	GCTCTTC	1 cut(s)	2110
PcsI	WCGNNNNNNNCGW	3 cut(s)	156, 168, 480
PctI	GAATGC	1 cut(s)	1657
PdiI	GCCGGC	1 cut(s)	289
PfeI	GAWTC	3 cut(s)	209, 1828, 1883
PfoI	TCCNGGA	4 cut(s)	566, 776, 1767, 1888
PinAI	ACCGGT	1 cut(s)	626
PkrI	GCNGC	9 cut(s)	56, 225, 424, 548, 688, 1118, 1966, 1969, 1972
Ple19I	CGATCG	1 cut(s)	1396
PleI	GAGTC	5 cut(s)	272, 458, 522, 1576, 1727
PmaCI	CACGTG	1 cut(s)	441
PmlI	CACGTG	1 cut(s)	441
PpsI	GAGTC	5 cut(s)	272, 458, 522, 1576, 1727
Ppu21I	YACGTR	1 cut(s)	441
PscI	ACATGT	1 cut(s)	1221
Psp124BI	GAGCTC	2 cut(s)	351, 455
Psp6I	CCWGG	7 cut(s)	566, 681, 776, 965, 1158, 1888, 1958
PspCI	CACGTG	1 cut(s)	441
PspGI	CCWGG	7 cut(s)	566, 681, 776, 965, 1158, 1888, 1958
PspN4I	GGNNCC	3 cut(s)	292, 565, 1856
PspPI	GGNCC	6 cut(s)	424, 487, 774, 824, 1043, 1798
PsrI	GAACNNNNNNTAC	2 cut(s)	970, 1002
PsuI	RGATCY	2 cut(s)	32, 1892
PteI	GCGCGC	1 cut(s)	1206
PvuI	CGATCG	1 cut(s)	1396
RsaI	GTAC	7 cut(s)	461, 494, 755, 799, 1382, 2044, 2074
RsaNI	GTAC	7 cut(s)	460, 493, 754, 798, 1381, 2043, 2073
RseI	CAYNNNNRTG	1 cut(s)	1344
SacI	GAGCTC	2 cut(s)	351, 455
SapI	GCTCTTC	1 cut(s)	2110
SaqAI	TTAA	8 cut(s)	846, 1214, 1229, 1485, 1557, 1665, 1706, 2024
SatI	GCNGC	9 cut(s)	55, 224, 423, 547, 687, 1117, 1965, 1968, 1971
Sau96I	GGNCC	6 cut(s)	424, 487, 774, 824, 1043, 1798
ScaI	AGTACT	1 cut(s)	799
SchI	GAGTC	5 cut(s)	273, 458, 522, 1577, 1727
ScrFI	CCNGG	8 cut(s)	568, 683, 778, 967, 1160, 1769, 1890, 1960
SduI	GDGCHC	4 cut(s)	351, 438, 455, 2122
SexAI	ACCWGGT	1 cut(s)	1158
SfaNI	GCATC	1 cut(s)	1391
SfcI	CTRYAG	1 cut(s)	655
SfuI	TTCGAA	1 cut(s)	1717
SinI	GGWCC	4 cut(s)	487, 774, 824, 1798
SmiMI	CAYNNNNRTG	1 cut(s)	1344
SmlI	CTYRAG	2 cut(s)	466, 1664
SmoI	CTYRAG	2 cut(s)	466, 1664
SspMI	CTAG	5 cut(s)	921, 1283, 1875, 2054, 2064
SstI	GAGCTC	2 cut(s)	351, 455
StyD4I	CCNGG	8 cut(s)	566, 681, 776, 965, 1158, 1767, 1888, 1958
StyI	CCWWGG	3 cut(s)	45, 1101, 1342
TaaI	ACNGT	5 cut(s)	513, 977, 1112, 1244, 1385
TaiI	ACGT	6 cut(s)	323, 389, 412, 443, 600, 1028
TaqI	TCGA	4 cut(s)	518, 879, 1717, 2082
TaqII	GACCGA	1 cut(s)	1196
TatI	WGTACW	3 cut(s)	797, 1380, 2042
TauI	GCSGC	4 cut(s)	425, 549, 689, 1119
TfiI	GAWTC	3 cut(s)	209, 1828, 1883
Tru1I	TTAA	8 cut(s)	846, 1214, 1229, 1485, 1557, 1665, 1706, 2024
Tru9I	TTAA	8 cut(s)	846, 1214, 1229, 1485, 1557, 1665, 1706, 2024
TscAI	CASTG	8 cut(s)	260, 289, 764, 792, 1316, 1390, 2055, 2065
TseFI	GTSAC	4 cut(s)	382, 470, 1154, 1194
TseI	GCWGC	5 cut(s)	54, 223, 1964, 1967, 1970
Tsp45I	GTSAC	4 cut(s)	382, 470, 1154, 1194
TspDTI	ATGAA	7 cut(s)	219, 436, 628, 1455, 1494, 1530, 1566
TspGWI	ACGGA	1 cut(s)	1380
TspRI	CASTG	8 cut(s)	260, 289, 764, 792, 1316, 1390, 2055, 2065
Vha464I	CTTAAG	1 cut(s)	1664
VpaK11BI	GGWCC	4 cut(s)	487, 774, 824, 1798
XapI	RAATTY	1 cut(s)	1553
XceI	RCATGY	2 cut(s)	1225, 1408
XspI	CTAG	5 cut(s)	921, 1283, 1875, 2054, 2064
ZrmI	AGTACT	1 cut(s)	799
Zsp2I	ATGCAT	1 cut(s)	1406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.