Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004099

Physical Location & Seq

Genomic Coordinates Forward (+)

4247280 .. 4248600

Gene Structure 1321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00336450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGGCAGCAGCAAAGTAGCTCATCACCACAATCTCAAACATCATTCCCAACGCCCTAATTCTATTTCGTCTTTCTTCTCCCCAAAACTCTCCATCTACATCCTCGCTGCCTGCGTCACCCTCTTCGTCATCTTCCACATCCAGTCCCTTCAAACCCCACCTGAATCCACATCGTCGCTGCCTTCATGGTCTCTCAATCTCATGCGCCAGTGGCAGAGAGTCATCAACACCAATACTACTGCCGCCACCGCCACAGAGGAAGAAATTACATCCACGTCCTTCACCAACAACTACACCAACGAGCTCAACGCACTAAGAGACAAACTCCGGCAGTCACTCACGTTTCTCCCGCTCAAAGACTTACGTTACGCCCATGCGGCCCTCGTCGGGCACACGTGGTTCATGAGCTCCATGTACGACTCAAGTGATGAAGAAGGCGAGGTCCAGTACCAGCACTTCCCTTCACAGTTGTCGAGCAACAGACTCCTCTGCCTCAAAGGCCGCGACAACCATGACGGCTCCTGGAACTCATATGCCCTTGCGTGGCCAGACGCTCTTCCCCACAACGCAACCCTAATGACCGGCCTGTCCTTCATTTCCTACAACCACTACAGCTACGACAACATTTGGCACGGCCTGGCCGCCGTCATGCCCTTCGTGGCGTGGCACAAGAAGAACTCATGCGCCAAACCTGAGCGGTGGATTTTGTACCACTGGGGGGAGATTAGGTCCAGGATGGCAGTGTGGCTTAGTACTCTTATGGAGGCTACTTTTGGAGGTCCGCCGTTCGTGGAAGTATTTAATGGGGTTGAGGAAGGGAGGGCGGTTTGTTTCGAGGAGGCGGTGGTAATGAGGCACAACGAAGGTGGGATGTCTAGGGATCAGAGAATGGAGGTTTATGATCTAATGAGGTGTAAGGCCAGGGCTTACTGTAATGTGAGTTCGGAAGGGGAAGATCGTCGGAGGAAGATTGGAATGACGTTGTTCATGAGGACAGGGCCGAGATCGTTCAAGAACGAGAGTGCGGTCGTTGGGATCTTTGAGAAAGAGTGTGCCGAGGTTGACGGTTGCCGCTTGGTGGTGGCTCACTCCAACAACCTCACTTTCTGTGACCAGAGTCAGACTGTCAGAGTAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF563

Protein Analysis

379

Amino Acids

43.21

Weight (kDa)

7.27

Isoelectric Point (pI)

57.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33590 AT4G33600
fragaria_vesca	FvH4_2g11820 FvH4_5g35970
malus_domestica	MD05G1047000.v1.1 MD08G1191500.v1.1 MD15G1380300.v1.1
prunus_persica	Prupe.1G526500_v2.0.a1 Prupe.8G066800_v2.0.a1
pyrus_communis	pycom15g34060
rosa_chinensis	RchiOBHm_Chr4g0390351 RchiOBHm_Chr7g0237711
rosa_laevigata	RLG00000000975 RLG00000009924
rosa_multiflora	Rmu_co8254707.1_g000001 Rmu_co8428079.1_g000001 Rmu_sc0029360.1_g000001 Rmu_sc0029361.1_g000001 Rmu_ssc0000067.1_g000045
rosa_roxburghii	Rroxscaffold_3G00223850 Rroxscaffold_5G00336450
rosa_rugosa	Rorug03G0330300 Rorug07G0306500
rosa_samantha	Rh4AG031800 Rh4BG026000 Rh4CG035000 Rh4DG027600 Rh7AG463300 Rh7BG433300 Rh7CG480200 Rh7DG449200
rosa_wichuraiana	Rw4G002530 Rw7G038330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	586
AccBSI	CCGCTC	2 cut(s)	352, 697
AccII	CGCG	1 cut(s)	504
AclWI	GGATC	2 cut(s)	888, 1043
AcoI	YGGCCR	2 cut(s)	545, 639
AcvI	CACGTG	1 cut(s)	396
AfaI	GTAC	4 cut(s)	416, 449, 710, 754
AfiI	CCNNNNNNNGG	4 cut(s)	387, 543, 718, 1078
AflIII	ACRYGT	1 cut(s)	393
AgsI	TTSAA	2 cut(s)	152, 1012
AjiI	CACGTC	1 cut(s)	276
AjnI	CCWGG	4 cut(s)	521, 636, 731, 920
AluBI	AGCT	4 cut(s)	20, 304, 408, 615
AluI	AGCT	4 cut(s)	20, 304, 408, 615
Alw21I	GWGCWC	2 cut(s)	306, 410
Alw26I	GTCTC	2 cut(s)	195, 312
AlwI	GGATC	2 cut(s)	888, 1043
AoxI	GGCC	8 cut(s)	378, 499, 545, 583, 634, 639, 918, 998
ApeKI	GCWGC	4 cut(s)	6, 9, 107, 178
AspLEI	GCGC	2 cut(s)	207, 686
AspS9I	GGNCC	5 cut(s)	379, 442, 729, 779, 998
AsuHPI	GGTGA	3 cut(s)	17, 109, 274
AvaII	GGWCC	3 cut(s)	442, 729, 779
BaeGI	GKGCMC	1 cut(s)	393
BalI	TGGCCA	1 cut(s)	547
BanII	GRGCYC	2 cut(s)	306, 410
BarI	GAAGNNNNNNTAC	2 cut(s)	440, 472
BbrPI	CACGTG	1 cut(s)	396
Bbv12I	GWGCWC	2 cut(s)	306, 410
BbvI	GCAGC	4 cut(s)	18, 21, 94, 165
BccI	CCATC	2 cut(s)	101, 730
BceAI	ACGGC	4 cut(s)	532, 629, 649, 769
BciT130I	CCWGG	4 cut(s)	523, 638, 733, 922
BcoDI	GTCTC	2 cut(s)	195, 312
BfaI	CTAG	1 cut(s)	876
BfmI	CTRYAG	1 cut(s)	610
BglI	GCCNNNNNGGC	2 cut(s)	377, 498
BisI	GCNGC	9 cut(s)	7, 10, 108, 179, 243, 378, 502, 642, 1072
BlsI	GCNGC	9 cut(s)	8, 11, 109, 180, 244, 379, 503, 643, 1073
BmcAI	AGTACT	1 cut(s)	754
Bme1390I	CCNGG	4 cut(s)	523, 638, 733, 922
Bme18I	GGWCC	3 cut(s)	442, 729, 779
BmgBI	CACGTC	1 cut(s)	276
BmgT120I	GGNCC	5 cut(s)	379, 442, 729, 779, 998
BmiI	GGNNCC	1 cut(s)	520
BmrFI	CCNGG	4 cut(s)	523, 638, 733, 922
BmrI	ACTGGG	1 cut(s)	724
BmuI	ACTGGG	1 cut(s)	724
BoxI	GACNNNNGTC	1 cut(s)	1116
BplI	GAGNNNNNCTC	2 cut(s)	309, 341
Bpu10I	CCTNAGC	1 cut(s)	693
BpuEI	CTTGAG	1 cut(s)	406
BsaAI	YACGTR	1 cut(s)	396
BsaI	GGTCTC	1 cut(s)	195
BsaJI	CCNNGG	2 cut(s)	921, 1056
BsaXI	ACNNNNNCTCC	2 cut(s)	713, 743
Bsc4I	CCNNNNNNNGG	4 cut(s)	387, 543, 718, 1078
Bse118I	RCCGGY	1 cut(s)	581
Bse1I	ACTGG	4 cut(s)	142, 208, 445, 719
BseBI	CCWGG	4 cut(s)	523, 638, 733, 922
BseDI	CCNNGG	2 cut(s)	921, 1056
BseGI	GGATG	5 cut(s)	99, 138, 269, 741, 876
BseLI	CCNNNNNNNGG	4 cut(s)	387, 543, 718, 1078
BseMII	CTCAG	1 cut(s)	684
BseNI	ACTGG	4 cut(s)	142, 208, 445, 719
BseRI	GAGGAG	2 cut(s)	476, 851
BseSI	GKGCMC	1 cut(s)	393
BseXI	GCAGC	4 cut(s)	18, 21, 94, 165
Bsh1236I	CGCG	1 cut(s)	504
Bsh1285I	CGRYCG	1 cut(s)	1029
BshFI	GGCC	8 cut(s)	380, 501, 547, 585, 636, 641, 920, 1000
BsiEI	CGRYCG	1 cut(s)	1029
BsiHKAI	GWGCWC	2 cut(s)	306, 410
BsiSI	CCGG	2 cut(s)	328, 582
BslFI	GGGAC	1 cut(s)	130
BslI	CCNNNNNNNGG	4 cut(s)	387, 543, 718, 1078
BsmAI	GTCTC	2 cut(s)	195, 312
BsmFI	GGGAC	1 cut(s)	130
BsnI	GGCC	8 cut(s)	380, 501, 547, 585, 636, 641, 920, 1000
Bso31I	GGTCTC	1 cut(s)	195
Bsp1286I	GDGCHC	3 cut(s)	306, 393, 410
Bsp143I	GATC	5 cut(s)	880, 901, 955, 1004, 1035
BspANI	GGCC	8 cut(s)	380, 501, 547, 585, 636, 641, 920, 1000
BspCNI	CTCAG	1 cut(s)	685
BspFNI	CGCG	1 cut(s)	504
BspHI	TCATGA	2 cut(s)	402, 987
BspLI	GGNNCC	1 cut(s)	520
BspPI	GGATC	2 cut(s)	888, 1043
BspQI	GCTCTTC	1 cut(s)	561
BspTNI	GGTCTC	1 cut(s)	195
BsrBI	CCGCTC	2 cut(s)	352, 697
BsrFI	RCCGGY	1 cut(s)	581
BsrI	ACTGG	4 cut(s)	142, 208, 445, 719
BssAI	RCCGGY	1 cut(s)	581
BssECI	CCNNGG	2 cut(s)	921, 1056
BssMI	GATC	5 cut(s)	880, 901, 955, 1004, 1035
Bst2UI	CCWGG	4 cut(s)	523, 638, 733, 922
Bst4CI	ACNGT	4 cut(s)	468, 932, 1067, 1126
Bst6I	CTCTTC	2 cut(s)	128, 561
BstBAI	YACGTR	1 cut(s)	396
BstC8I	GCNNGC	1 cut(s)	112
BstDEI	CTNAG	3 cut(s)	314, 693, 749
BstF5I	GGATG	5 cut(s)	99, 138, 269, 741, 876
BstFNI	CGCG	1 cut(s)	504
BstHHI	GCGC	2 cut(s)	207, 686
BstKTI	GATC	5 cut(s)	883, 904, 958, 1007, 1038
BstMAI	GTCTC	2 cut(s)	195, 312
BstMBI	GATC	5 cut(s)	880, 901, 955, 1004, 1035
BstMCI	CGRYCG	1 cut(s)	1029
BstMWI	GCNNNNNNNGC	4 cut(s)	211, 248, 377, 498
BstNI	CCWGG	4 cut(s)	523, 638, 733, 922
BstPAI	GACNNNNGTC	1 cut(s)	1116
BstSCI	CCNGG	4 cut(s)	521, 636, 731, 920
BstSFI	CTRYAG	1 cut(s)	610
BstSLI	GKGCMC	1 cut(s)	393
BstUI	CGCG	1 cut(s)	504
BstV1I	GCAGC	4 cut(s)	18, 21, 94, 165
BstX2I	RGATCY	1 cut(s)	1035
BstYI	RGATCY	1 cut(s)	1035
BsuRI	GGCC	8 cut(s)	380, 501, 547, 585, 636, 641, 920, 1000
BtrI	CACGTC	1 cut(s)	276
BtsCI	GGATG	5 cut(s)	99, 138, 269, 741, 876
BtsI	GCAGTG	1 cut(s)	747
BtsIMutI	CAGTG	3 cut(s)	215, 712, 747
Cac8I	GCNNGC	1 cut(s)	112
CciI	TCATGA	2 cut(s)	402, 987
CfoI	GCGC	2 cut(s)	207, 686
Cfr10I	RCCGGY	1 cut(s)	581
Cfr13I	GGNCC	5 cut(s)	379, 442, 729, 779, 998
CseI	GACGC	2 cut(s)	103, 560
Csp6I	GTAC	4 cut(s)	415, 448, 709, 753
CspCI	CAANNNNNGTGG	2 cut(s)	847, 882
CviAII	CATG	9 cut(s)	186, 202, 374, 403, 412, 512, 649, 681, 988
CviQI	GTAC	4 cut(s)	415, 448, 709, 753
DdeI	CTNAG	3 cut(s)	314, 693, 749
DpnI	GATC	5 cut(s)	882, 903, 957, 1006, 1037
DpnII	GATC	5 cut(s)	880, 901, 955, 1004, 1035
DrdI	GACNNNNNNGTC	1 cut(s)	586
DseDI	GACNNNNNNGTC	1 cut(s)	586
EaeI	YGGCCR	2 cut(s)	545, 639
Eam1104I	CTCTTC	2 cut(s)	128, 561
EarI	CTCTTC	2 cut(s)	128, 561
EciI	GGCGGA	1 cut(s)	771
Ecl136II	GAGCTC	2 cut(s)	304, 408
Eco24I	GRGCYC	2 cut(s)	306, 410
Eco31I	GGTCTC	1 cut(s)	195
Eco47I	GGWCC	3 cut(s)	442, 729, 779
Eco53kI	GAGCTC	2 cut(s)	304, 408
Eco72I	CACGTG	1 cut(s)	396
EcoICRI	GAGCTC	2 cut(s)	304, 408
EcoRII	CCWGG	4 cut(s)	521, 636, 731, 920
EcoT38I	GRGCYC	2 cut(s)	306, 410
FaeI	CATG	9 cut(s)	189, 205, 377, 406, 415, 515, 652, 684, 991
FaqI	GGGAC	1 cut(s)	130
FatI	CATG	9 cut(s)	185, 201, 373, 402, 411, 511, 648, 680, 987
FauI	CCCGC	1 cut(s)	357
FauNDI	CATATG	1 cut(s)	532
Fnu4HI	GCNGC	9 cut(s)	7, 10, 108, 179, 243, 378, 502, 642, 1072
FokI	GGATG	5 cut(s)	86, 125, 256, 748, 883
FriOI	GRGCYC	2 cut(s)	306, 410
Fsp4HI	GCNGC	9 cut(s)	7, 10, 108, 179, 243, 378, 502, 642, 1072
FspBI	CTAG	1 cut(s)	876
GlaI	GCGC	2 cut(s)	206, 685
GluI	GCNGC	9 cut(s)	7, 10, 108, 179, 243, 378, 502, 642, 1072
HaeIII	GGCC	8 cut(s)	380, 501, 547, 585, 636, 641, 920, 1000
HapII	CCGG	2 cut(s)	328, 582
HgaI	GACGC	2 cut(s)	103, 560
HhaI	GCGC	2 cut(s)	207, 686
Hin1II	CATG	9 cut(s)	189, 205, 377, 406, 415, 515, 652, 684, 991
Hin6I	GCGC	2 cut(s)	205, 684
HinP1I	GCGC	2 cut(s)	205, 684
HincII	GTYRAC	1 cut(s)	1063
HindII	GTYRAC	1 cut(s)	1063
HinfI	GANTC	5 cut(s)	164, 219, 419, 483, 1117
HpaII	CCGG	2 cut(s)	328, 582
HphI	GGTGA	3 cut(s)	17, 109, 274
Hpy166II	GTNNAC	1 cut(s)	1063
Hpy188I	TCNGA	5 cut(s)	885, 946, 963, 1122, 1130
Hpy188III	TCNNGA	3 cut(s)	403, 988, 1012
Hpy8I	GTNNAC	1 cut(s)	1063
Hpy99I	CGWCG	3 cut(s)	178, 389, 963
HpyCH4III	ACNGT	4 cut(s)	468, 932, 1067, 1126
HpyCH4IV	ACGT	5 cut(s)	275, 341, 364, 395, 980
HpyF10VI	GCNNNNNNNGC	4 cut(s)	211, 248, 377, 498
HpyF3I	CTNAG	3 cut(s)	314, 693, 749
HpySE526I	ACGT	5 cut(s)	275, 341, 364, 395, 980
Hsp92II	CATG	9 cut(s)	189, 205, 377, 406, 415, 515, 652, 684, 991
HspAI	GCGC	2 cut(s)	205, 684
Kzo9I	GATC	5 cut(s)	880, 901, 955, 1004, 1035
LguI	GCTCTTC	1 cut(s)	561
LmnI	GCTCC	2 cut(s)	413, 524
Lsp1109I	GCAGC	4 cut(s)	18, 21, 94, 165
MaeI	CTAG	1 cut(s)	876
MaeII	ACGT	5 cut(s)	275, 341, 364, 395, 980
MaeIII	GTNAC	4 cut(s)	115, 333, 365, 1109
MalI	GATC	5 cut(s)	882, 903, 957, 1006, 1037
MbiI	CCGCTC	2 cut(s)	352, 697
MboI	GATC	5 cut(s)	880, 901, 955, 1004, 1035
MboII	GAAGA	9 cut(s)	67, 115, 124, 272, 443, 548, 685, 965, 979
MflI	RGATCY	1 cut(s)	1035
MhlI	GDGCHC	3 cut(s)	306, 393, 410
MlsI	TGGCCA	1 cut(s)	547
MluCI	AATT	3 cut(s)	58, 264, 1134
MluNI	TGGCCA	1 cut(s)	547
MlyI	GAGTC	4 cut(s)	228, 413, 477, 1126
MmeI	TCCRAC	2 cut(s)	941, 1116
Mox20I	TGGCCA	1 cut(s)	547
MscI	TGGCCA	1 cut(s)	547
MseI	TTAA	2 cut(s)	801, 1138
Msp20I	TGGCCA	1 cut(s)	547
MspI	CCGG	2 cut(s)	328, 582
MspR9I	CCNGG	4 cut(s)	523, 638, 733, 922
MvaI	CCWGG	4 cut(s)	523, 638, 733, 922
MvnI	CGCG	1 cut(s)	504
MwoI	GCNNNNNNNGC	4 cut(s)	211, 248, 377, 498
NdeI	CATATG	1 cut(s)	532
NdeII	GATC	5 cut(s)	880, 901, 955, 1004, 1035
NlaIII	CATG	9 cut(s)	189, 205, 377, 406, 415, 515, 652, 684, 991
NlaIV	GGNNCC	1 cut(s)	520
NmeAIII	GCCGAG	2 cut(s)	1026, 1081
NmuCI	GTSAC	3 cut(s)	115, 333, 1109
PagI	TCATGA	2 cut(s)	402, 987
PciSI	GCTCTTC	1 cut(s)	561
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PfeI	GAWTC	1 cut(s)	164
PfoI	TCCNGGA	2 cut(s)	521, 731
PkrI	GCNGC	9 cut(s)	8, 11, 109, 180, 244, 379, 503, 643, 1073
PleI	GAGTC	4 cut(s)	227, 413, 477, 1125
PmaCI	CACGTG	1 cut(s)	396
PmlI	CACGTG	1 cut(s)	396
PpsI	GAGTC	4 cut(s)	227, 413, 477, 1125
Ppu21I	YACGTR	1 cut(s)	396
PshAI	GACNNNNGTC	1 cut(s)	1116
Psp124BI	GAGCTC	2 cut(s)	306, 410
Psp6I	CCWGG	4 cut(s)	521, 636, 731, 920
PspCI	CACGTG	1 cut(s)	396
PspGI	CCWGG	4 cut(s)	521, 636, 731, 920
PspN4I	GGNNCC	1 cut(s)	520
PspPI	GGNCC	5 cut(s)	379, 442, 729, 779, 998
PsrI	GAACNNNNNNTAC	2 cut(s)	925, 957
PsuI	RGATCY	1 cut(s)	1035
RsaI	GTAC	4 cut(s)	416, 449, 710, 754
RsaNI	GTAC	4 cut(s)	415, 448, 709, 753
SacI	GAGCTC	2 cut(s)	306, 410
SapI	GCTCTTC	1 cut(s)	561
SaqAI	TTAA	2 cut(s)	801, 1138
SatI	GCNGC	9 cut(s)	7, 10, 108, 179, 243, 378, 502, 642, 1072
Sau3AI	GATC	5 cut(s)	880, 901, 955, 1004, 1035
Sau96I	GGNCC	5 cut(s)	379, 442, 729, 779, 998
ScaI	AGTACT	1 cut(s)	754
SchI	GAGTC	4 cut(s)	228, 413, 477, 1126
ScrFI	CCNGG	4 cut(s)	523, 638, 733, 922
SduI	GDGCHC	3 cut(s)	306, 393, 410
SfcI	CTRYAG	1 cut(s)	610
SinI	GGWCC	3 cut(s)	442, 729, 779
SmlI	CTYRAG	1 cut(s)	421
SmoI	CTYRAG	1 cut(s)	421
Sse9I	AATT	3 cut(s)	58, 264, 1134
SspMI	CTAG	1 cut(s)	876
SstI	GAGCTC	2 cut(s)	306, 410
StyD4I	CCNGG	4 cut(s)	521, 636, 731, 920
TaaI	ACNGT	4 cut(s)	468, 932, 1067, 1126
TaiI	ACGT	5 cut(s)	278, 344, 367, 398, 983
TaqI	TCGA	2 cut(s)	473, 834
TasI	AATT	3 cut(s)	58, 264, 1134
TatI	WGTACW	1 cut(s)	752
TauI	GCSGC	5 cut(s)	245, 380, 504, 644, 1074
TfiI	GAWTC	1 cut(s)	164
Tru1I	TTAA	2 cut(s)	801, 1138
Tru9I	TTAA	2 cut(s)	801, 1138
TscAI	CASTG	3 cut(s)	215, 719, 747
TseFI	GTSAC	3 cut(s)	115, 333, 1109
TseI	GCWGC	4 cut(s)	6, 9, 107, 178
Tsp45I	GTSAC	3 cut(s)	115, 333, 1109
TspDTI	ATGAA	5 cut(s)	174, 391, 444, 583, 976
TspRI	CASTG	3 cut(s)	215, 719, 747
VpaK11BI	GGWCC	3 cut(s)	442, 729, 779
XspI	CTAG	1 cut(s)	876
ZrmI	AGTACT	1 cut(s)	754

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.