Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0004099

Physical Location & Seq

Genomic Coordinates Forward (+)

24513802 .. 24515479

Gene Structure 1678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1191500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGAAGTGGAAAGCAAGGCCAAGCTATTAAACAAAAAGAAGAGCTTTTCTCACTCAACTGTTCTCATCGCCATTTGCCTTTTTTCACTCTTTCTGATTCTTATCCTATATCTTGCACAACCCTCTCCTTCCTTCTCTCCCGCCTTGAAACTCCAAAACTCGGTTACATTTCTTCCTCTCAAAGACACAAGGTTTGCCAACACTGCAATGAAGGGAAACACTTGGTTTATGAGCTCCTTGAACGACACATATGAAGAAAATGAATCTGAATACCTTTATTTCCCTTCGAAGGCGTCCGACGAAAAGCTATTGTGCATTAAAGGGAATGACATAAGCGACGGCACCAGAAACTCATATGCCTTGGCATATCCTGAAGGCCTACCAAACTCCACCACATTCTTGAAGGGTCTCGCGTTCATGTCCGACACATTCTATGACTACGGAAACTTGTGGCACGAGTTAACGGCCATGATGCCTTTTGTCGGTTGGTCTATCAAAAATCGATGCGCAAAGCAGGCAAGGCAAGTTCCGGTCGAAGAATTCGAGAAAGATGAAAGGCCTTATTGCTTCGAGAAGGCGATGGTGATGAGGCATAATGTTGGGAAAATGGGGAAGCAGAAGAAGCTTCAAGTGTCTGACTTGTTGAGATGTAAAGTAAGACAGTTTTGTGGCATAAACCCGAATGGCAGAGGCAGAGAGGTCACTTTGAGAGGGGAGCCAAGCATAACGTTGACATTGCTAATGAGGAATGGATTAAGATCGTTCAAGAATCCGACGGCTGTGATTAATGTGTTCTCAAGGGAGTGTGCGATGGTGGATGGGTGTACGTTAGAGGTGGTTCAGTCTGAAGATCTAAACTTCTGTGATCAGCTTGCAGGGGTAGGTCAGTATGCTCATCACTGGATGGCCGACCTGTCTGGTATGAAGCACCGGGGTGCTTGGTGGGATCCCTATGCCGAAAAAGAATGCCCGGACCCCAAAAAAGAACTGGAATGCTTTCTGTTTTACAAAGATGGGAAAGTCGGTCGCAATGAAACCTTCTTTGCAGACTGGGCAAGAAATGTCCTTGAACAAGTAAGAACAAGCAAGCTAAAACAAGACATTGAGAGTTTGCAGAGAAATTCAAATGTTTGCCAATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF563

Protein Analysis

381

Amino Acids

43.43

Weight (kDa)

8.46

Isoelectric Point (pI)

44.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33590 AT4G33600
fragaria_vesca	FvH4_2g11820 FvH4_5g35970
malus_domestica	MD05G1047000.v1.1 MD08G1191500.v1.1 MD15G1380300.v1.1
prunus_persica	Prupe.1G526500_v2.0.a1 Prupe.8G066800_v2.0.a1
pyrus_communis	pycom15g34060
rosa_chinensis	RchiOBHm_Chr4g0390351 RchiOBHm_Chr7g0237711
rosa_laevigata	RLG00000000975 RLG00000009924
rosa_multiflora	Rmu_co8254707.1_g000001 Rmu_co8428079.1_g000001 Rmu_sc0029360.1_g000001 Rmu_sc0029361.1_g000001 Rmu_ssc0000067.1_g000045
rosa_roxburghii	Rroxscaffold_3G00223850 Rroxscaffold_5G00336450
rosa_rugosa	Rorug03G0330300 Rorug07G0306500
rosa_samantha	Rh4AG031800 Rh4BG026000 Rh4CG035000 Rh4DG027600 Rh7AG463300 Rh7BG433300 Rh7CG480200 Rh7DG449200
rosa_wichuraiana	Rw4G002530 Rw7G038330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	508
AccB1I	GGYRCC	1 cut(s)	341
AccII	CGCG	1 cut(s)	413
AciI	CCGC	1 cut(s)	141
AclI	AACGTT	1 cut(s)	728
AclWI	GGATC	2 cut(s)	941, 954
AcoI	YGGCCR	2 cut(s)	465, 906
AcsI	RAATTY	2 cut(s)	539, 1120
AcuI	CTGAAG	2 cut(s)	393, 867
AcyI	GRCGYC	1 cut(s)	293
AfaI	GTAC	1 cut(s)	826
AfiI	CCNNNNNNNGG	3 cut(s)	160, 289, 482
AgsI	TTSAA	7 cut(s)	148, 241, 403, 629, 766, 1070, 1125
AleI	CACNNNNGTG	1 cut(s)	933
AluBI	AGCT	7 cut(s)	25, 45, 234, 307, 625, 871, 1090
AluI	AGCT	7 cut(s)	25, 45, 234, 307, 625, 871, 1090
Alw21I	GWGCWC	1 cut(s)	236
Alw26I	GTCTC	1 cut(s)	413
AlwI	GGATC	2 cut(s)	941, 954
AoxI	GGCC	5 cut(s)	18, 376, 465, 557, 906
ApoI	RAATTY	2 cut(s)	539, 1120
ArsI	GACNNNNNNTTYG	2 cut(s)	176, 208
AseI	ATTAAT	1 cut(s)	786
Asp700I	GAANNNNTTC	1 cut(s)	996
AspLEI	GCGC	1 cut(s)	509
AspS9I	GGNCC	1 cut(s)	973
AsuC2I	CCSGG	2 cut(s)	932, 971
AsuHPI	GGTGA	1 cut(s)	595
AsuII	TTCGAA	1 cut(s)	287
AvaII	GGWCC	1 cut(s)	973
BamHI	GGATCC	1 cut(s)	946
BanI	GGYRCC	1 cut(s)	341
BanII	GRGCYC	1 cut(s)	236
BauI	CACGAG	1 cut(s)	455
Bbv12I	GWGCWC	1 cut(s)	236
BccI	CCATC	5 cut(s)	574, 805, 812, 898, 1007
BceAI	ACGGC	3 cut(s)	355, 480, 792
BclI	TGATCA	1 cut(s)	865
BcnI	CCSGG	2 cut(s)	932, 971
BcoDI	GTCTC	1 cut(s)	413
BfaI	CTAG	1 cut(s)	1141
BglII	AGATCT	1 cut(s)	850
Bme1390I	CCNGG	2 cut(s)	932, 971
Bme18I	GGWCC	1 cut(s)	973
BmgT120I	GGNCC	1 cut(s)	973
BmiI	GGNNCC	4 cut(s)	343, 717, 948, 975
BmrFI	CCNGG	2 cut(s)	932, 971
BmrI	ACTGGG	1 cut(s)	1060
BmsI	GCATC	2 cut(s)	462, 494
BmuI	ACTGGG	1 cut(s)	1060
BplI	GAGNNNNNCTC	2 cut(s)	34, 66
Bpu14I	TTCGAA	1 cut(s)	287
BpuEI	CTTGAG	1 cut(s)	781
BpuMI	CCSGG	2 cut(s)	932, 971
Bsa29I	ATCGAT	1 cut(s)	502
BsaBI	GATNNNNATC	2 cut(s)	101, 757
BsaHI	GRCGYC	1 cut(s)	293
BsaI	GGTCTC	1 cut(s)	413
BsaJI	CCNNGG	2 cut(s)	360, 931
BsaWI	WCCGGW	1 cut(s)	529
Bsc4I	CCNNNNNNNGG	3 cut(s)	160, 289, 482
Bse1I	ACTGG	3 cut(s)	905, 993, 1055
Bse3DI	GCAATG	3 cut(s)	213, 734, 1036
Bse8I	GATNNNNATC	2 cut(s)	101, 757
BseCI	ATCGAT	1 cut(s)	502
BseDI	CCNNGG	2 cut(s)	360, 931
BseGI	GGATG	2 cut(s)	823, 909
BseJI	GATNNNNATC	2 cut(s)	101, 757
BseLI	CCNNNNNNNGG	3 cut(s)	160, 289, 482
BseMI	GCAATG	3 cut(s)	213, 734, 1036
BseNI	ACTGG	3 cut(s)	905, 993, 1055
Bsh1236I	CGCG	1 cut(s)	413
Bsh1285I	CGRYCG	2 cut(s)	534, 1027
BshFI	GGCC	5 cut(s)	20, 378, 467, 559, 908
BshNI	GGYRCC	1 cut(s)	341
BshVI	ATCGAT	1 cut(s)	502
BsiEI	CGRYCG	2 cut(s)	534, 1027
BsiHKAI	GWGCWC	1 cut(s)	236
BsiSI	CCGG	3 cut(s)	530, 931, 971
BslI	CCNNNNNNNGG	3 cut(s)	160, 289, 482
BsmAI	GTCTC	1 cut(s)	413
BsmI	GAATGC	2 cut(s)	971, 998
BsnI	GGCC	5 cut(s)	20, 378, 467, 559, 908
Bso31I	GGTCTC	1 cut(s)	413
Bsp119I	TTCGAA	1 cut(s)	287
Bsp1286I	GDGCHC	1 cut(s)	236
Bsp143I	GATC	4 cut(s)	758, 850, 865, 946
BspACI	CCGC	1 cut(s)	141
BspANI	GGCC	5 cut(s)	20, 378, 467, 559, 908
BspDI	ATCGAT	1 cut(s)	502
BspFNI	CGCG	1 cut(s)	413
BspLI	GGNNCC	4 cut(s)	343, 717, 948, 975
BspPI	GGATC	2 cut(s)	941, 954
BspQI	GCTCTTC	1 cut(s)	35
BspT104I	TTCGAA	1 cut(s)	287
BspT107I	GGYRCC	1 cut(s)	341
BspTNI	GGTCTC	1 cut(s)	413
BsrDI	GCAATG	3 cut(s)	213, 734, 1036
BsrI	ACTGG	3 cut(s)	905, 993, 1055
BssECI	CCNNGG	2 cut(s)	360, 931
BssMI	GATC	4 cut(s)	758, 850, 865, 946
BssNI	GRCGYC	1 cut(s)	293
BssSI	CACGAG	1 cut(s)	455
BssT1I	CCWWGG	1 cut(s)	360
Bst2BI	CACGAG	1 cut(s)	455
Bst4CI	ACNGT	2 cut(s)	61, 663
Bst6I	CTCTTC	1 cut(s)	35
BstACI	GRCGYC	1 cut(s)	293
BstBI	TTCGAA	1 cut(s)	287
BstC8I	GCNNGC	3 cut(s)	516, 873, 1088
BstF5I	GGATG	2 cut(s)	823, 909
BstFNI	CGCG	1 cut(s)	413
BstHHI	GCGC	1 cut(s)	509
BstKTI	GATC	4 cut(s)	761, 853, 868, 949
BstMAI	GTCTC	1 cut(s)	413
BstMBI	GATC	4 cut(s)	758, 850, 865, 946
BstMCI	CGRYCG	2 cut(s)	534, 1027
BstMWI	GCNNNNNNNGC	5 cut(s)	203, 515, 520, 622, 1052
BstSCI	CCNGG	2 cut(s)	930, 969
BstUI	CGCG	1 cut(s)	413
BstX2I	RGATCY	2 cut(s)	850, 946
BstYI	RGATCY	2 cut(s)	850, 946
Bsu15I	ATCGAT	1 cut(s)	502
BsuRI	GGCC	5 cut(s)	20, 378, 467, 559, 908
BsuTUI	ATCGAT	1 cut(s)	502
BtgZI	GCGATG	3 cut(s)	52, 593, 824
BtsCI	GGATG	2 cut(s)	823, 909
BtsI	GCAGTG	1 cut(s)	201
BtsIMutI	CAGTG	2 cut(s)	201, 898
Cac8I	GCNNGC	3 cut(s)	516, 873, 1088
CfoI	GCGC	1 cut(s)	509
Cfr13I	GGNCC	1 cut(s)	973
ClaI	ATCGAT	1 cut(s)	502
CseI	GACGC	1 cut(s)	282
Csp6I	GTAC	1 cut(s)	825
CviAII	CATG	2 cut(s)	418, 469
CviQI	GTAC	1 cut(s)	825
DpnI	GATC	4 cut(s)	760, 852, 867, 948
DpnII	GATC	4 cut(s)	758, 850, 865, 946
EaeI	YGGCCR	2 cut(s)	465, 906
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
Ecl136II	GAGCTC	1 cut(s)	234
Eco130I	CCWWGG	1 cut(s)	360
Eco147I	AGGCCT	2 cut(s)	378, 559
Eco24I	GRGCYC	1 cut(s)	236
Eco31I	GGTCTC	1 cut(s)	413
Eco47I	GGWCC	1 cut(s)	973
Eco53kI	GAGCTC	1 cut(s)	234
Eco57I	CTGAAG	2 cut(s)	393, 867
EcoICRI	GAGCTC	1 cut(s)	234
EcoRI	GAATTC	1 cut(s)	539
EcoT14I	CCWWGG	1 cut(s)	360
EcoT38I	GRGCYC	1 cut(s)	236
ErhI	CCWWGG	1 cut(s)	360
FaeI	CATG	2 cut(s)	421, 472
FalI	AAGNNNNNCTT	2 cut(s)	29, 61
FatI	CATG	2 cut(s)	417, 468
FauI	CCCGC	1 cut(s)	148
FauNDI	CATATG	2 cut(s)	250, 355
FbaI	TGATCA	1 cut(s)	865
FokI	GGATG	2 cut(s)	830, 916
FriOI	GRGCYC	1 cut(s)	236
FspBI	CTAG	1 cut(s)	1141
FspI	TGCGCA	1 cut(s)	508
GlaI	GCGC	1 cut(s)	508
HaeIII	GGCC	5 cut(s)	20, 378, 467, 559, 908
HapII	CCGG	3 cut(s)	530, 931, 971
HgaI	GACGC	1 cut(s)	282
HhaI	GCGC	1 cut(s)	509
Hin1I	GRCGYC	1 cut(s)	293
Hin1II	CATG	2 cut(s)	421, 472
Hin6I	GCGC	1 cut(s)	507
HinP1I	GCGC	1 cut(s)	507
HincII	GTYRAC	2 cut(s)	462, 732
HindII	GTYRAC	2 cut(s)	462, 732
HindIII	AAGCTT	1 cut(s)	623
HinfI	GANTC	3 cut(s)	97, 263, 769
HpaI	GTTAAC	1 cut(s)	462
HpaII	CCGG	3 cut(s)	530, 931, 971
HphI	GGTGA	1 cut(s)	595
Hpy166II	GTNNAC	3 cut(s)	462, 732, 825
Hpy188I	TCNGA	7 cut(s)	96, 268, 298, 424, 637, 774, 847
Hpy188III	TCNNGA	5 cut(s)	371, 400, 544, 571, 766
Hpy8I	GTNNAC	3 cut(s)	462, 732, 825
Hpy99I	CGWCG	3 cut(s)	302, 341, 778
HpyAV	CCTTC	9 cut(s)	138, 142, 205, 283, 294, 368, 397, 568, 1048
HpyCH4III	ACNGT	2 cut(s)	61, 663
HpyCH4IV	ACGT	2 cut(s)	728, 827
HpyCH4V	TGCA	6 cut(s)	116, 206, 315, 875, 1046, 1114
HpyF10VI	GCNNNNNNNGC	5 cut(s)	203, 515, 520, 622, 1052
HpySE526I	ACGT	2 cut(s)	728, 827
Hsp92I	GRCGYC	1 cut(s)	293
Hsp92II	CATG	2 cut(s)	421, 472
HspAI	GCGC	1 cut(s)	507
Ksp22I	TGATCA	1 cut(s)	865
KspAI	GTTAAC	1 cut(s)	462
Kzo9I	GATC	4 cut(s)	758, 850, 865, 946
LguI	GCTCTTC	1 cut(s)	35
LmnI	GCTCC	2 cut(s)	239, 715
LweI	GCATC	2 cut(s)	462, 494
MaeI	CTAG	1 cut(s)	1141
MaeII	ACGT	2 cut(s)	728, 827
MaeIII	GTNAC	2 cut(s)	163, 700
MalI	GATC	4 cut(s)	760, 852, 867, 948
MboI	GATC	4 cut(s)	758, 850, 865, 946
MboII	GAAGA	6 cut(s)	52, 164, 266, 548, 631, 860
MflI	RGATCY	2 cut(s)	850, 946
MhlI	GDGCHC	1 cut(s)	236
MluCI	AATT	2 cut(s)	539, 1120
MmeI	TCCRAC	3 cut(s)	321, 447, 797
MnlI	CCTC	8 cut(s)	133, 186, 582, 683, 691, 704, 738, 826
MroXI	GAANNNNTTC	1 cut(s)	996
MseI	TTAA	5 cut(s)	29, 318, 461, 755, 786
MslI	CAYNNNNRTG	2 cut(s)	206, 933
MspI	CCGG	3 cut(s)	530, 931, 971
MspR9I	CCNGG	2 cut(s)	932, 971
Mva1269I	GAATGC	2 cut(s)	971, 998
MvnI	CGCG	1 cut(s)	413
MwoI	GCNNNNNNNGC	5 cut(s)	203, 515, 520, 622, 1052
NciI	CCSGG	2 cut(s)	932, 971
NdeI	CATATG	2 cut(s)	250, 355
NdeII	GATC	4 cut(s)	758, 850, 865, 946
NlaIII	CATG	2 cut(s)	421, 472
NlaIV	GGNNCC	4 cut(s)	343, 717, 948, 975
NmuCI	GTSAC	1 cut(s)	700
NsbI	TGCGCA	1 cut(s)	508
NspV	TTCGAA	1 cut(s)	287
OliI	CACNNNNGTG	1 cut(s)	933
PceI	AGGCCT	2 cut(s)	378, 559
PciSI	GCTCTTC	1 cut(s)	35
PcsI	WCGNNNNNNNCGW	1 cut(s)	540
PctI	GAATGC	2 cut(s)	971, 998
PdmI	GAANNNNTTC	1 cut(s)	996
PfeI	GAWTC	3 cut(s)	97, 263, 769
PshBI	ATTAAT	1 cut(s)	786
Psp124BI	GAGCTC	1 cut(s)	236
Psp1406I	AACGTT	1 cut(s)	728
PspN4I	GGNNCC	4 cut(s)	343, 717, 948, 975
PspPI	GGNCC	1 cut(s)	973
PsuI	RGATCY	2 cut(s)	850, 946
RsaI	GTAC	1 cut(s)	826
RsaNI	GTAC	1 cut(s)	825
RseI	CAYNNNNRTG	2 cut(s)	206, 933
SacI	GAGCTC	1 cut(s)	236
SapI	GCTCTTC	1 cut(s)	35
SaqAI	TTAA	5 cut(s)	29, 318, 461, 755, 786
Sau3AI	GATC	4 cut(s)	758, 850, 865, 946
Sau96I	GGNCC	1 cut(s)	973
ScrFI	CCNGG	2 cut(s)	932, 971
SduI	GDGCHC	1 cut(s)	236
SfaNI	GCATC	2 cut(s)	462, 494
SfuI	TTCGAA	1 cut(s)	287
SinI	GGWCC	1 cut(s)	973
SmiMI	CAYNNNNRTG	2 cut(s)	206, 933
SmlI	CTYRAG	1 cut(s)	796
SmoI	CTYRAG	1 cut(s)	796
Sse9I	AATT	2 cut(s)	539, 1120
SseBI	AGGCCT	2 cut(s)	378, 559
SsiI	CCGC	1 cut(s)	141
SspMI	CTAG	1 cut(s)	1141
SstI	GAGCTC	1 cut(s)	236
StuI	AGGCCT	2 cut(s)	378, 559
StyD4I	CCNGG	2 cut(s)	930, 969
StyI	CCWWGG	1 cut(s)	360
TaaI	ACNGT	2 cut(s)	61, 663
TaiI	ACGT	2 cut(s)	731, 830
TaqI	TCGA	5 cut(s)	287, 502, 534, 543, 570
TaqII	GACCGA	1 cut(s)	1013
TasI	AATT	2 cut(s)	539, 1120
TfiI	GAWTC	3 cut(s)	97, 263, 769
Tru1I	TTAA	5 cut(s)	29, 318, 461, 755, 786
Tru9I	TTAA	5 cut(s)	29, 318, 461, 755, 786
TscAI	CASTG	2 cut(s)	208, 905
TseFI	GTSAC	1 cut(s)	700
Tsp45I	GTSAC	1 cut(s)	700
TspDTI	ATGAA	7 cut(s)	224, 267, 276, 406, 567, 938, 1047
TspGWI	ACGGA	1 cut(s)	456
TspRI	CASTG	2 cut(s)	208, 905
VpaK11BI	GGWCC	1 cut(s)	973
VspI	ATTAAT	1 cut(s)	786
XapI	RAATTY	2 cut(s)	539, 1120
XcmI	CCANNNNNNNNNTGG	1 cut(s)	985
XmnI	GAANNNNTTC	1 cut(s)	996
XspI	CTAG	1 cut(s)	1141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.